-
1
-
-
0037586531
-
Genomic transcriptional profiling of the developmental cycle of Chlamydia trachomatis
-
Belland, R. J., G. Zhong, D. D. Crane, D. Hogan, D. Sturdevant, J. Sharma, W. L. Beatty, and H. D. Caldwell. 2003. Genomic transcriptional profiling of the developmental cycle of Chlamydia trachomatis. Proc. Natl. Acad. Sci. USA 100:8478-8483.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8478-8483
-
-
Belland, R.J.1
Zhong, G.2
Crane, D.D.3
Hogan, D.4
Sturdevant, D.5
Sharma, J.6
Beatty, W.L.7
Caldwell, H.D.8
-
2
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F. R., G. Plunkett III, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett III, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
3
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on bias and variance
-
Bolstad, B. M., R. A. Irizarry, M. Astrand, and T. P. Speed. 2003. A comparison of normalization methods for high density oligonucleotide array data based on bias and variance. Bioinformatics 19:185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
4
-
-
0021943393
-
Bacillus subtilis sigma 28 and Escherichia coli sigma 32 (htpR) are minor sigma factors that display an overlapping promoter specificity
-
Briat, J. F., M. Z. Gilman, and M. J. Chamberlin. 1985. Bacillus subtilis sigma 28 and Escherichia coli sigma 32 (htpR) are minor sigma factors that display an overlapping promoter specificity. J. Biol. Chem. 260:2038-2041.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 2038-2041
-
-
Briat, J.F.1
Gilman, M.Z.2
Chamberlin, M.J.3
-
5
-
-
0027197403
-
Molecular cloning and expression of hctB encoding a strain-variant chlamydial histone-like protein with DNA-binding activity
-
Brickman, T. J., C. E. Barry III, and T. Hackstadt. 1993. Molecular cloning and expression of hctB encoding a strain-variant chlamydial histone-like protein with DNA-binding activity. J. Bacteriol. 175:4274-4281.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4274-4281
-
-
Brickman, T.J.1
Barry III, C.E.2
Hackstadt, T.3
-
6
-
-
0037398368
-
LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
-
Brudno, M., C. B. Do, G. M. Cooper, M. F. Kim, E. Davydov, E. D. Green, A. Sidow, and S. Batzoglou. 2003. LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA. Genome Res. 13:721-731.
-
(2003)
Genome Res.
, vol.13
, pp. 721-731
-
-
Brudno, M.1
Do, C.B.2
Cooper, G.M.3
Kim, M.F.4
Davydov, E.5
Green, E.D.6
Sidow, A.7
Batzoglou, S.8
-
7
-
-
0034444676
-
Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar Typhimurium and Escherichia coli
-
Chilcott, G. S., and K. T. Hughes. 2000. Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar Typhimurium and Escherichia coli. Microbiol. Mol. Biol. Rev. 64:694-708.
-
(2000)
Microbiol. Mol. Biol. Rev.
, vol.64
, pp. 694-708
-
-
Chilcott, G.S.1
Hughes, K.T.2
-
8
-
-
0029831067
-
The sigma suhiinit of Escherichia coli RNA polymerase senses promoter spacing
-
Dombroski, A. J., B. D. Johnson, M. Lonetto, and C. A. Gross. 1996. The sigma suhiinit of Escherichia coli RNA polymerase senses promoter spacing. Proc. Natl. Acad. Sci. USA 93:8858-8862.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8858-8862
-
-
Dombroski, A.J.1
Johnson, B.D.2
Lonetto, M.3
Gross, C.A.4
-
9
-
-
0029819429
-
Mutagenesis of the P2 promoter of the major outer membrane protein gene of Chlamydia trachomatis
-
Douglas, A. L., and T. P. Hatch. 1996. Mutagenesis of the P2 promoter of the major outer membrane protein gene of Chlamydia trachomatis. J. Bacteriol. 178:5573-5578.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5573-5578
-
-
Douglas, A.L.1
Hatch, T.P.2
-
10
-
-
0038354921
-
Region 4 of sigma as a target for transcription regulation
-
Dove, S. L., S. A. Darst, and A. Hochschild. 2003. Region 4 of sigma as a target for transcription regulation. Mol. Microbiol. 48:863-874.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 863-874
-
-
Dove, S.L.1
Darst, S.A.2
Hochschild, A.3
-
11
-
-
0032544080
-
Identification of an UP element consensus sequence for bacterial promoters
-
Estrem, S. T., T. Gaal, W. Ross, and R. L. Gourse. 1998. Identification of an UP element consensus sequence for bacterial promoters. Proc. Natl. Acad. Sci. USA 95:9761-9766.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9761-9766
-
-
Estrem, S.T.1
Gaal, T.2
Ross, W.3
Gourse, R.L.4
-
12
-
-
0029081859
-
Characterization of late gene promoters of Chlamydia trachomatis
-
Fahr, M. J., A. L. Douglas, W. Xia, and T. P. Hatch. 1995. Characterization of late gene promoters of Chlamydia trachomatis. J. Bacteriol. 177:4252-4260.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 4252-4260
-
-
Fahr, M.J.1
Douglas, A.L.2
Xia, W.3
Hatch, T.P.4
-
13
-
-
0028904426
-
Promoter architecture in the flagellar regulon of Bacillus subtilis: High-level expression of flagellin by the sigma D RNA polymerase requires an upstream promoter element
-
Fredrick, K., T. Caramori, Y. F. Chen, A. Galizzi, and J. D. Helmann. 1995. Promoter architecture in the flagellar regulon of Bacillus subtilis: high-level expression of flagellin by the sigma D RNA polymerase requires an upstream promoter element. Proc. Natl. Acad. Sci. USA 92:2582-2586.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2582-2586
-
-
Fredrick, K.1
Caramori, T.2
Chen, Y.F.3
Galizzi, A.4
Helmann, J.D.5
-
14
-
-
33644861941
-
Identification of new flagellar genes of Salmonella enterica serovar Typhimurium
-
Frye, J., J. E. Karlinsey, H. R. Felise, B. Marzolf, N. Dowidar, M. McClelland, and K. T. Hughes. 2006. Identification of new flagellar genes of Salmonella enterica serovar Typhimurium. J. Bacteriol. 188:2233-2243.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 2233-2243
-
-
Frye, J.1
Karlinsey, J.E.2
Felise, H.R.3
Marzolf, B.4
Dowidar, N.5
McClelland, M.6
Hughes, K.T.7
-
15
-
-
0032459427
-
The functional and regulatory roles of sigma factors in transcription
-
Gross, C. A., C. Chan, A. Dombroski, T. Gruber, M. Sharp, J. Tupy, and B. Young. 1998. The functional and regulatory roles of sigma factors in transcription. Cold Spring Harbor Symp. Quant. Biol. 63:141-155.
-
(1998)
Cold Spring Harbor Symp. Quant. Biol.
, vol.63
, pp. 141-155
-
-
Gross, C.A.1
Chan, C.2
Dombroski, A.3
Gruber, T.4
Sharp, M.5
Tupy, J.6
Young, B.7
-
16
-
-
0002229143
-
Developmental biology
-
R. S. Stephens (ed.). American Society for Microbiology, Washington, D.C.
-
Hatch, T. P. 1999. Developmental biology, p 29-67. In R. S. Stephens (ed.), Chlamydia. Intracellular biology, pathogenesis, and immunity. American Society for Microbiology, Washington, D.C.
-
(1999)
Chlamydia. Intracellular Biology, Pathogenesis, and Immunity
, pp. 29-67
-
-
Hatch, T.P.1
-
17
-
-
0029041524
-
Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: Evidence for extended contact between RNA polymerasc and upstream promoter DNA
-
Helmann, J. D. 1995. Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: evidence for extended contact between RNA polymerasc and upstream promoter DNA. Nucleic Acids Res. 23:2351-2360.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2351-2360
-
-
Helmann, J.D.1
-
18
-
-
0033149857
-
Reevaluation of the promoter structure of the class 3 flagellar operons of Escherichia coli and Salmonella
-
Ide, N., T. Ikebe, and K. Kutsukake. 1999. Reevaluation of the promoter structure of the class 3 flagellar operons of Escherichia coli and Salmonella. Genes Genet. Syst. 74:113-116.
-
(1999)
Genes Genet. Syst.
, vol.74
, pp. 113-116
-
-
Ide, N.1
Ikebe, T.2
Kutsukake, K.3
-
19
-
-
0033178270
-
Promoter analysis of the class 2 flagellar operons of Salmonella
-
Ikebe, T., S. Iyoda, and K. Kutsukake. 1999. Promoter analysis of the class 2 flagellar operons of Salmonella. Genes Genet. Syst. 74:179-183.
-
(1999)
Genes Genet. Syst.
, vol.74
, pp. 179-183
-
-
Ikebe, T.1
Iyoda, S.2
Kutsukake, K.3
-
20
-
-
0033765113
-
Functional modulation of Escherichia coli RNA polymerase
-
Ishihama, A. 2000. Functional modulation of Escherichia coli RNA polymerase. Annu. Rev. Microbiol. 54:499-518.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 499-518
-
-
Ishihama, A.1
-
21
-
-
0036169909
-
Functional characterization of the antagonistic flagellar late regulators FliA and FlgM of Helicobacter pylori and their effects on the H. pylori transcriptome
-
Josenhans, C., E. Niehus, S. Amersbach, A. Horster, C. Betz, B. Drescher, K. T. Hughes, and S. Suerbaum. 2002. Functional characterization of the antagonistic flagellar late regulators FliA and FlgM of Helicobacter pylori and their effects on the H. pylori transcriptome. Mol. Microbiol. 43:307-322.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 307-322
-
-
Josenhans, C.1
Niehus, E.2
Amersbach, S.3
Horster, A.4
Betz, C.5
Drescher, B.6
Hughes, K.T.7
Suerbaum, S.8
-
22
-
-
0032953228
-
Comparative genomes of Chlamydia pneumoniae and C. trachomatis
-
Kalman, S., W. Mitchell, R. Marathe, C. Lammet, J. Fan, R. W. Hyman, L. Olinger, J. Grimwood, R. W. Davis, and R. S. Stephens. 1999. Comparative genomes of Chlamydia pneumoniae and C. trachomatis. Nat. Genet. 21:385-389.
-
(1999)
Nat. Genet.
, vol.21
, pp. 385-389
-
-
Kalman, S.1
Mitchell, W.2
Marathe, R.3
Lammet, C.4
Fan, J.5
Hyman, R.W.6
Olinger, L.7
Grimwood, J.8
Davis, R.W.9
Stephens, R.S.10
-
23
-
-
33644885318
-
Genetic transplantation: Salmonella enterica serovar Typhimurium as a host to study sigma factor and anti-sigma factor interactions in genetically intractable systems
-
Karlinsey, J. E., and K. T. Hughes. 2006. Genetic transplantation: Salmonella enterica serovar Typhimurium as a host to study sigma factor and anti-sigma factor interactions in genetically intractable systems. J. Bacteriol. 188:103-114.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 103-114
-
-
Karlinsey, J.E.1
Hughes, K.T.2
-
24
-
-
13444262374
-
EcoCyc: A comprehensive database resource for Escherichia coli
-
Keseler, I. M., J. Collado-Vides, S. Gama-Castro, J. Ingraham, S. Paley, I. T. Paulsen, M. Peralta-Gil, and P. D. Karp. 2005. EcoCyc: a comprehensive database resource for Escherichia coli. Nucleic Acids Res. 33:D334-D337.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Keseler, I.M.1
Collado-Vides, J.2
Gama-Castro, S.3
Ingraham, J.4
Paley, S.5
Paulsen, I.T.6
Peralta-Gil, M.7
Karp, P.D.8
-
25
-
-
0034721950
-
Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli
-
Ko, M., and C. Park. 2000. Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli. J. Mol. Biol. 303:371-382.
-
(2000)
J. Mol. Biol.
, vol.303
, pp. 371-382
-
-
Ko, M.1
Park, C.2
-
26
-
-
0025338009
-
Chlamydia trachomatis RNA polymerase major sigma subunit. Sequence and structural comparison of conserved and unique regions with Escherichia coli sigma 70 and Bacillus subtilis sigma 43
-
Koehler, J. E., R. R. Burgess, N. E. Thompson, and R. S. Stephens. 1990. Chlamydia trachomatis RNA polymerase major sigma subunit. Sequence and structural comparison of conserved and unique regions with Escherichia coli sigma 70 and Bacillus subtilis sigma 43. J. Biol. Chem. 265:13206-13214.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 13206-13214
-
-
Koehler, J.E.1
Burgess, R.R.2
Thompson, N.E.3
Stephens, R.S.4
-
27
-
-
0018981498
-
Definition of additional flagellar genes in Escherichia coli K12
-
Komeda, Y., K. Kutsukake, and T. Iino. 1980. Definition of additional flagellar genes in Escherichia coli K12. Genetics 94:277-290.
-
(1980)
Genetics
, vol.94
, pp. 277-290
-
-
Komeda, Y.1
Kutsukake, K.2
Iino, T.3
-
28
-
-
0030842026
-
Promoter selectivity of Escherichia coli RNA polymerase sigmaF holoenzyme involved in transcription of flagellar and chemotaxis genes
-
Kundu, T. K., S. Kusano, and A. Ishihama. 1997. Promoter selectivity of Escherichia coli RNA polymerase sigmaF holoenzyme involved in transcription of flagellar and chemotaxis genes. J. Bacteriol. 179:4264-4269.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4264-4269
-
-
Kundu, T.K.1
Kusano, S.2
Ishihama, A.3
-
29
-
-
0036469062
-
A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition
-
Kuznedelov, K., L. Minakhin, A. Niedziela-Majka, S. L. Dove, D. Rogulja, B. E. Nickels, A. Hochschild, T. Heyduk, and K. Severinov. 2002. A role for interaction of the RNA polymerase flap domain with the sigma subunit in promoter recognition. Science 295:855-857.
-
(2002)
Science
, vol.295
, pp. 855-857
-
-
Kuznedelov, K.1
Minakhin, L.2
Niedziela-Majka, A.3
Dove, S.L.4
Rogulja, D.5
Nickels, B.E.6
Hochschild, A.7
Heyduk, T.8
Severinov, K.9
-
30
-
-
0035228215
-
BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
-
Liu, X., D. L. Brutlag, and J. S. Liu. 2001. BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac. Symp. Biocomput. 6:127-138.
-
(2001)
Pac. Symp. Biocomput.
, vol.6
, pp. 127-138
-
-
Liu, X.1
Brutlag, D.L.2
Liu, J.S.3
-
31
-
-
0029788013
-
Differential regulation of multiple overlapping promoters in flagellar class II operons in Escherichia coli
-
Liu, X., and P. Matsumura. 1996. Differential regulation of multiple overlapping promoters in flagellar class II operons in Escherichia coli. Mol. Microbiol. 21:613-620.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 613-620
-
-
Liu, X.1
Matsumura, P.2
-
32
-
-
0026612797
-
The sigma 70 family: Sequence conservation and evolutionary relationships
-
Lonetto, M., M. Gribskov, and C. A. Gross. 1992. The sigma 70 family: sequence conservation and evolutionary relationships. J. Bacteriol. 174:3843-3849.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 3843-3849
-
-
Lonetto, M.1
Gribskov, M.2
Gross, C.A.3
-
33
-
-
0028246626
-
The RNA polymerase of Chlamydia trachomatis has a flexible sequence requirement at the -10 and -35 boxes of its promoters
-
Mathews, S. A., and K. S. Sriprakash. 1994. The RNA polymerase of Chlamydia trachomatis has a flexible sequence requirement at the -10 and -35 boxes of its promoters. J. Bacteriol. 176:3785-3789.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 3785-3789
-
-
Mathews, S.A.1
Sriprakash, K.S.2
-
34
-
-
0032774446
-
DNA structure and novel amino and carboxyl termini of the Chlamydia sigma 70 analogue modulate promoter recognition
-
Mathews, S. A., and R. S. Stephens. 1999. DNA structure and novel amino and carboxyl termini of the Chlamydia sigma 70 analogue modulate promoter recognition. Microbiology 145:1671-8181.
-
(1999)
Microbiology
, vol.145
, pp. 1671-8181
-
-
Mathews, S.A.1
Stephens, R.S.2
-
35
-
-
0033759269
-
Identification and mapping of sigma-54 promoters in Chlamydia trachomatis
-
Mathews, S. A., and P. Timms. 2000. Identification and mapping of sigma-54 promoters in Chlamydia trachomatis. J. Bacteriol. 182:6239-6242.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6239-6242
-
-
Mathews, S.A.1
Timms, P.2
-
36
-
-
0030996777
-
An improved GFP cloning cassette designed for prokaryotic transcriptional fusions
-
Miller, W. G., and S. E. Lindow. 1997. An improved GFP cloning cassette designed for prokaryotic transcriptional fusions. Gene 191:149-153.
-
(1997)
Gene
, vol.191
, pp. 149-153
-
-
Miller, W.G.1
Lindow, S.E.2
-
37
-
-
0025979037
-
Interaction of chlamydiae and host cells in vitro
-
Moulder, J. W. 1991. Interaction of chlamydiae and host cells in vitro. Microbiol. Rev. 55:143-190.
-
(1991)
Microbiol. Rev.
, vol.55
, pp. 143-190
-
-
Moulder, J.W.1
-
39
-
-
0038561166
-
Global stage-specific gene regulation during the developmental cycle of Chlamydia trachomatis
-
Nicholson, T. L., L. Olinger, K. Chong, G. Schoolnik, and R. S. Stephens. 2003. Global stage-specific gene regulation during the developmental cycle of Chlamydia trachomatis. J. Bacteriol. 185:3179-3189.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3179-3189
-
-
Nicholson, T.L.1
Olinger, L.2
Chong, K.3
Schoolnik, G.4
Stephens, R.S.5
-
40
-
-
0035928603
-
Novel sigmaF-dependent genes of Escherichia coli found using a specified promoter consensus
-
Park, K., S. Choi, M. Ko, and C. Park. 2001. Novel sigmaF-dependent genes of Escherichia coli found using a specified promoter consensus. FEMS Microbiol. Lett. 202:243-250.
-
(2001)
FEMS Microbiol. Lett.
, vol.202
, pp. 243-250
-
-
Park, K.1
Choi, S.2
Ko, M.3
Park, C.4
-
41
-
-
0034744733
-
The novel sigma54- and sigma28-dependent flagellar gene transcription hierarchy of Vibrio cholerae
-
Prouty, M. G., N. E. Correa, and K. E. Klose. 2001. The novel sigma54- and sigma28-dependent flagellar gene transcription hierarchy of Vibrio cholerae. Mol. Microbiol. 39:1595-1609.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1595-1609
-
-
Prouty, M.G.1
Correa, N.E.2
Klose, K.E.3
-
42
-
-
0034654345
-
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
-
Reads, T. D., R. C. Brunham, C. Shen, S. R. Gill, J. F. Heidelberg, O. White, E. K. Hickey, J. Peterson, T. Utterback, K. Berry, S. Bass, K. Linher, J. Weidman, H. Khouri, B. Craven, C. Bowman, R. Dodson, M. Gwinn, W. Nelson, R. DeBoy, J. Kolonay, G. McClarty, S. L. Salzberg, J. Eisen, and C. M. Fraser. 2000. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res. 28:1397-1406.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1397-1406
-
-
Reads, T.D.1
Brunham, R.C.2
Shen, C.3
Gill, S.R.4
Heidelberg, J.F.5
White, O.6
Hickey, E.K.7
Peterson, J.8
Utterback, T.9
Berry, K.10
Bass, S.11
Linher, K.12
Weidman, J.13
Khouri, H.14
Craven, B.15
Bowman, C.16
Dodson, R.17
Gwinn, M.18
Nelson, W.19
Deboy, R.20
Kolonay, J.21
McClarty, G.22
Salzberg, S.L.23
Eisen, J.24
Fraser, C.M.25
more..
-
43
-
-
0027761839
-
A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase
-
Ross, W., K. K. Gosink, J. Salomon, K. Igarashi, C. Zou, A. Ishihama, K. Severinov, and R. L. Gourse. 1993. A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase. Science 262:1407-1413.
-
(1993)
Science
, vol.262
, pp. 1407-1413
-
-
Ross, W.1
Gosink, K.K.2
Salomon, J.3
Igarashi, K.4
Zou, C.5
Ishihama, A.6
Severinov, K.7
Gourse, R.L.8
-
44
-
-
12244264445
-
Sequence-independent upstream DNA-alphaCTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association
-
Ross, W., and R. L. Gourse. 2005. Sequence-independent upstream DNA-alphaCTD interactions strongly stimulate Escherichia coli RNA polymerase-lacUV5 promoter association. Proc. Natl. Acad. Sci. USA 102:291-296.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 291-296
-
-
Ross, W.1
Gourse, R.L.2
-
45
-
-
0038522852
-
An intersubunit contact stimulating transcription initiation by E. coli RNA polymerase: Interaction of the alpha C-terminal domain and sigma region 4
-
Ross, W., D. A. Schneider, B. J. Paul, A. Mertens, and R. L. Gourse. 2003. An intersubunit contact stimulating transcription initiation by E. coli RNA polymerase: interaction of the alpha C-terminal domain and sigma region 4. Genes Dev. 17:1293-1307.
-
(2003)
Genes Dev.
, vol.17
, pp. 1293-1307
-
-
Ross, W.1
Schneider, D.A.2
Paul, B.J.3
Mertens, A.4
Gourse, R.L.5
-
46
-
-
9144270496
-
RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
-
Salgado, H., S. Gama-Castro, A. Martinez-Antonio, E. Diaz-Peredo, F. Sanchez-Solano, M. Peralta-Gil, D. Garcia-Alonso, V. Jimenez-Jacinto, A. Santos-Zavaleta, C. Bonavides-Martinez, and J. Collado-Vides. 2004. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12. Nucleic Acids Res. 32:D303-D306.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Salgado, H.1
Gama-Castro, S.2
Martinez-Antonio, A.3
Diaz-Peredo, E.4
Sanchez-Solano, F.5
Peralta-Gil, M.6
Garcia-Alonso, D.7
Jimenez-Jacinto, V.8
Santos-Zavaleta, A.9
Bonavides-Martinez, C.10
Collado-Vides, J.11
-
47
-
-
0001252269
-
Infection and diseases epidemiology
-
R. S. Stephens (ed.). American Society for Microbiology, Washington, D.C.
-
Schachter, J. 1999. Infection and diseases epidemiology, p. 139-169. In R. S. Stephens (ed.), Chlamydia. Intracellular biology, pathogenesis, and immunity. American Society for Microbiology, Washington, D.C.
-
(1999)
Chlamydia. Intracellular Biology, Pathogenesis, and Immunity
, pp. 139-169
-
-
Schachter, J.1
-
48
-
-
0033605752
-
Transcription initiation at the flagellin promoter by RNA polymerase carrying sigma28 from Salmonella typhimurium
-
Schauhach, O. L., and A. J. Dombroski. 1999. Transcription initiation at the flagellin promoter by RNA polymerase carrying sigma28 from Salmonella typhimurium. J. Biol. Chem. 274:8757-8763.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 8757-8763
-
-
Schauhach, O.L.1
Dombroski, A.J.2
-
49
-
-
1642432873
-
Chlamydia trachomatis sigma28 recognizes the fliC promoter of Escherichia coli and responds to heat shock in chlamydiae
-
Shen, L., M. Li, and Y. X. Zhang. 2004. Chlamydia trachomatis sigma28 recognizes the fliC promoter of Escherichia coli and responds to heat shock in chlamydiae. Microbiology 150:205-215.
-
(2004)
Microbiology
, vol.150
, pp. 205-215
-
-
Shen, L.1
Li, M.2
Zhang, Y.X.3
-
50
-
-
0034235888
-
Identification and characterization of promoters regulating tuf expression in Chlamydia trachomatis serovar F
-
Shen, L., Y. Shi, A. L. Douglas, T. P. Hatch, C. M. O'Connell, J. M. Chen, and Y. X. Zhang. 2000. Identification and characterization of promoters regulating tuf expression in Chlamydia trachomatis serovar F. Arch. Biochem. Biophys. 379:46-56.
-
(2000)
Arch. Biochem. Biophys.
, vol.379
, pp. 46-56
-
-
Shen, L.1
Shi, Y.2
Douglas, A.L.3
Hatch, T.P.4
O'Connell, C.M.5
Chen, J.M.6
Zhang, Y.X.7
-
51
-
-
1842766125
-
Crystal structure of the flagellar sigma/anti-sigma complex sigma(28)/FlgM reveals an intact sigma factor in an inactive conformation
-
Sorenson, M. K., S. S. Ray, and S. A. Darst. 2004. Crystal structure of the flagellar sigma/anti-sigma complex sigma(28)/FlgM reveals an intact sigma factor in an inactive conformation. Mol. Cell 14:127-138.
-
(2004)
Mol. Cell
, vol.14
, pp. 127-138
-
-
Sorenson, M.K.1
Ray, S.S.2
Darst, S.A.3
-
52
-
-
0032561496
-
Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis
-
Stephens, R. S., S. Kalman, C. Lammel, J. Fan, R. Marathe, L. Aravind, W. Mitchell, L. Olinger, R. L. Tatusov, Q. Zhao, E. V. Koonin, and R. W. Davis. 1998. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science 282:754-759.
-
(1998)
Science
, vol.282
, pp. 754-759
-
-
Stephens, R.S.1
Kalman, S.2
Lammel, C.3
Fan, J.4
Marathe, R.5
Aravind, L.6
Mitchell, W.7
Olinger, L.8
Tatusov, R.L.9
Zhao, Q.10
Koonin, E.V.11
Davis, R.W.12
-
53
-
-
0029847651
-
Identification of sequences necessary for transcription in vitro from the Chlamydia trachomatis rRNA P1 promoter
-
Tan, M., and J. N. Engel. 1996. Identification of sequences necessary for transcription in vitro from the Chlamydia trachomatis rRNA P1 promoter. J. Bacteriol. 178:6975-6982.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6975-6982
-
-
Tan, M.1
Engel, J.N.2
-
54
-
-
0031956095
-
Mutational analysis of the Chlamydia trachomatis rRNA P1 promoter defines four regions important for transcription in vitro
-
Tan, M., T. Gaal, R. L. Gourse, and J. N. Engel. 1998. Mutational analysis of the Chlamydia trachomatis rRNA P1 promoter defines four regions important for transcription in vitro. J. Bacteriol. 180:2359-2366.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2359-2366
-
-
Tan, M.1
Gaal, T.2
Gourse, R.L.3
Engel, J.N.4
-
55
-
-
0029830433
-
Transcriptional organization and regulation of the dnaK and groE operons of Chlamydia trachomatis
-
Tan, M., B. Wong, and J. N. Engel. 1996. Transcriptional organization and regulation of the dnaK and groE operons of Chlamydia trachomatis. J. Bacteriol. 178:6983-6990.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6983-6990
-
-
Tan, M.1
Wong, B.2
Engel, J.N.3
-
56
-
-
12344252276
-
Differential ability of sigma(s) and sigma70 of Escherichia coli to utilize promoters containing half or full UP-element sites
-
Typas, A., and R. Hengge. 2005. Differential ability of sigma(s) and sigma70 of Escherichia coli to utilize promoters containing half or full UP-element sites. Mol. Microbiol. 55:250-260.
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 250-260
-
-
Typas, A.1
Hengge, R.2
-
57
-
-
0039820099
-
Eubacterial sigma-factors
-
Wösten, M. M. 1998. Eubacterial sigma-factors. FEMS Microbiol. Rev. 22:127-150.
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, pp. 127-150
-
-
Wösten, M.M.1
-
58
-
-
0142030043
-
Sigma28 RNA polymerase regulates hctB, a late developmental gene in Chlamydia
-
Yu, H. H., and M. Tan. 2003. Sigma28 RNA polymerase regulates hctB, a late developmental gene in Chlamydia. Mol. Microbiol. 50:577-584.
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 577-584
-
-
Yu, H.H.1
Tan, M.2
|