Direct in vitro selection of hemin-binding DNA aptamer with peroxidase activity

Bulletin of the Chemical Society of Japan

Volumn 82, Issue 1, 2009, Pages 99-104

  Liu, Mingzhe ^a   Kagahara, Takuma ^a   Abe, Hiroshi ^a   Ito, Yoshihiro ^a  

^a RIKEN   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AFFINITY COLUMNS; APTAMER; APTAMER SEQUENCES; APTAMERS; BINDING AFFINITIES; CHEMICALLY SYNTHESIZED; DNA APTAMERS; DNA POOLS; IN VITRO SELECTIONS; PEROXIDASE ACTIVITIES; RANDOM SEQUENCES; RANDOMIZED SEQUENCES; SELECTION PROCESSES;

BINDING ENERGY; COENZYMES; DNA; GENES; NUCLEIC ACIDS; OLIGONUCLEOTIDES; ORGANIC ACIDS; SYNTHESIS (CHEMICAL); WINDOWS OPERATING SYSTEM;

DNA SEQUENCES;

EID: 58349084879     PISSN: 00092673     EISSN: 13480634     Source Type: Journal    
DOI: 10.1246/bcsj.82.99     Document Type: Article

References (46)

1. S. Hou, M. F. Reynolds, F. T. Horrigan, S. H. Heinemann, T. Hoshi, Acc. Chem. Res. 2006, 39, 918.
2. K. Ogawa, K. Igarashi, C. Nishitani, S. Shibahara, H. Fujita, J. Health Sci. 2002, 48, 1.
3. J. H. Dawson, Science 1988, 240, 433.
4. M. Sono, M. P. Roach, E. D. Coulter, J. H. Dawson, Chem. Rev. 1996, 96, 2841.
5. L. Dai, A. M. Klibanov, Biotechnol. Bioeng. 2000, 70, 353.
6. A. C. Grabski, H. J. Grimek, R. R. Burgess, Biotechnol. Bioeng. 1998, 60, 204.
7. T.-Y. Lin, C.-H. Wu, J. D. Brennan, Biosens. Bioelectron. 2007, 22, 1861.
8. S. V. Rao, K. W. Anderson, L. G. Bachas, Biotechnol. Bioeng. 1999, 65, 389.
9. K. Takahashi, A. Matsushima, Y. Saito, Y. Inada, Biochem. Biophys. Res. Commun. 1986, 138, 283.
10. N. Kamiya, M. Goto, S. Furusaki, Biotechnol. Bioeng. 1999, 64, 502.
11. A. G. Cochran, P. G. Schultz, J. Am. Chem. Soc. 1990, 112, 9414.
12. A. G. Cochran, P. G. Schultz, Science 1990, 249, 781.
13. M. Takagi, K. Kohda, T. Hamuro, A. Harada, H. Yamaguchi, M. Kamachi, T. Imanaka, FEBS Lett. 1995, 375, 273.
14. R. Quilez, S. de Lauzon, B. Desfosses, D. Mansuy, J.-P. Mahy, FEBS Lett. 1996, 395, 73.
15. Y. Kawamura-Konishi, A. Asano, M. Yamazaki, H. Tashiro, H. Suzuki, J. Mol. Catal. B: Enzym. 1998, 4, 181.
16. A. D. Ellington, J. W. Szostak, Nature 1990, 346, 818.
17. C. Tuerk, L. Gold, Science 1990, 249, 505.
18. Y. Ito, H. Abe, A. Wada, M. Liu, ACS Symp. Ser. 2008, 999, 194.
19. M. Famulok, J. S. Hartig, G. Mayer, Chem. Rev. 2007, 107, 3715.
20. N. K. Navani, Y. Li, Curr. Opin. Chem. Biol. 2006, 10, 272.
21. Y. Lu, J. Liu, Curr. Opin. Biotechnol. 2006, 17, 580.
22. J. Lee, G. M. Stovall, A. D. Ellington, Curr. Opin. Chem. Biol. 2006, 10, 282.
23. R. R. Breaker, Nature 2004, 432, 838.
24. Y. F. Li, C. R. Geyer, D. Sen, Biochemistry 1996, 35, 6911.
25. N. Teramoto, H. Ichinari, N. Kawazoe, Y. Imanishi, Y. Ito, Biotechnol. Bioeng. 2001, 75, 463.
26. J. C. Niles, M. A. Marietta, ACS Chem. Biol. 2006, 1, 515.
27. P. Travascio, P. K. Witting, A. G. Mauk, D. Sen, J. Am. Chem. Soc. 2001, 123, 1337.
28. P. Travascio, Y. Li, D. Sen, Chem. Biol. 1998, 5, 505.
29. K. Tsutsui, Methods Enzymol. 1986, 123, 331.
30. N. Kawazoe, N. Teramoto, H. Ichinari, Y. Imanishi, Y. Ito, Biomacromolecules 2001, 2, 681.
31. Y. Wang, K. Hamasaki, R. R. Rando, Biochemistry 1997, 36, 768.
32. R. E. Childs, W. G. Bardsley, Biochem. J. 1975, 145, 93.
33. Y. Xiao, V. Pavlov, R. Gill, T. Bourenko, I. Willner, ChemBioChem 2004, 5, 374.
34. N. Sugimoto, T. Toda, T. Ohmichi, Chem. Commun. 1998, 1533.
35. T. Mikuma, T. Ohyama, N. Terui, Y. Yamamoto, H. Hon, Chem. Commun. 2003, 1708.
36. T. Hayashi, Y. Hitomi, T. Ando, T. Mizutani, Y. Hisaeda, S. Kitagawa, H. Ogoshi, J. Am. Chem. Soc. 1999, 121, 1141.
37. A. Slama-Schwok, J.-M. Lehn, Biochemistry 1990, 29, 7895.
38. M. Zuker, Nucleic Acids Res. 2003, 31, 3406.
39. P. Balagurumoorthy, S. K. Brahmachari, D. Mohanty, M. Bansal, V. Sasisekharan, Nucleic Acids Res. 1992, 20, 4061.
40. A. Okazawa, H. Maeda, E. Fukusaki, Y. Katakura, A. Kobayashi, Bioorg. Med. Chem. Lett. 2000, 10, 2653.
41. G. Scatchard, Ann. N.Y. Acad. Sci. 1949, 51, 660.
42. D. Li, B. Shlyahovsky, J. Elbaz, I. Willner, J. Am. Chem. Soc. 2007, 129, 5804.
43. T. Li, S. Dong, E. Wang, Chem. Commun. 2007, 4209.
44. J. Elbaz, B. Shlyahovsky, D. Li, I. Willner, ChemBioChem 2008, 9, 232.
45. J. Elbaz, B. Shlyahovsky, I. Willner, Chem. Commun. 2008, 1569.
46. D. M. Kolpashchikov, J. Am. Chem. Soc. 2008, 130, 2934.