메뉴 건너뛰기




Volumn 2, Issue 4, 2008, Pages 405-422

Computational prediction models for cancer classification using mass spectrometry data

Author keywords

Bioinformatics; Cancer classification; Data mining; Information fusion; Mass spectrometry; Prediction models

Indexed keywords


EID: 58149343802     PISSN: 17485673     EISSN: 17485681     Source Type: Journal    
DOI: 10.1504/IJDMB.2008.022160     Document Type: Article
Times cited : (12)

References (39)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold, R. and Mann, M. (2003) 'Mass spectrometry-based proteomics', Nature, Vol. 422, pp.198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 0035491167 scopus 로고    scopus 로고
    • Proteomic approaches to biomarker discovery in prostate and bladder cancers
    • Adam, B.L., Vlahou, A., Semmes, O.J. and Wright Jr., G.L. (2001) 'Proteomic approaches to biomarker discovery in prostate and bladder cancers', Proteomics, Vol. 1, pp.1264-1270.
    • (2001) Proteomics , vol.1 , pp. 1264-1270
    • Adam, B.L.1    Vlahou, A.2    Semmes, O.J.3    Wright Jr., G.L.4
  • 3
    • 11144254100 scopus 로고    scopus 로고
    • Quantifying reproducibility for differential proteomics: Noise analysis for protein liquid chromatography-mass spectrometry of human serum
    • Anderle, M., Roy, S., Lin, H., Becker, C. and Joho, K. (2004) 'Quantifying reproducibility for differential proteomics: Noise analysis for protein liquid chromatography-mass spectrometry of human serum', Bioinformatics, Vol. 20, pp.3575-3582.
    • (2004) Bioinformatics , vol.20 , pp. 3575-3582
    • Anderle, M.1    Roy, S.2    Lin, H.3    Becker, C.4    Joho, K.5
  • 4
    • 18344396961 scopus 로고    scopus 로고
    • An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers
    • Ball, G., Mian, S., Holding, F., Allibone, R.O., Lowe, J., Ali, S., Li, G., McCardle, S., Ellis, I.O., Creaser, C. and Rees, R.C. (2002) 'An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers', Bioinformatics, Vol. 18, pp.395-404.
    • (2002) Bioinformatics , vol.18 , pp. 395-404
    • Ball, G.1    Mian, S.2    Holding, F.3    Allibone, R.O.4    Lowe, J.5    Ali, S.6    Li, G.7    McCardle, S.8    Ellis, I.O.9    Creaser, C.10    Rees, R.C.11
  • 8
    • 0021412027 scopus 로고
    • Vector quantization
    • Gray, R.M. (1984) 'Vector quantization', IEEE ASSP Mag., Vol. 1, pp.4-29.
    • (1984) IEEE ASSP Mag , vol.1 , pp. 4-29
    • Gray, R.M.1
  • 9
    • 0035712849 scopus 로고    scopus 로고
    • Advances in proteomic analysis by mass spectrometry
    • Griffin, T., Goodlett, D. and Aebersold, R. (2001) 'Advances in proteomic analysis by mass spectrometry', Curr. Opin. Biotechnol., Vol. 12, pp.607-612.
    • (2001) Curr. Opin. Biotechnol , vol.12 , pp. 607-612
    • Griffin, T.1    Goodlett, D.2    Aebersold, R.3
  • 13
    • 25444463295 scopus 로고    scopus 로고
    • Feature selection and nearest centroid classification for protein mass spectrometry
    • Levner, I. (2005) 'Feature selection and nearest centroid classification for protein mass spectrometry', BMC Bioinformatics, Vol. 6, p.68, http://www.biomedcentral.com/1471-2105/6/68
    • (2005) BMC Bioinformatics , vol.6 , pp. 68
    • Levner, I.1
  • 14
    • 0742269626 scopus 로고    scopus 로고
    • Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum
    • Lilien, R.H., Farid, H. and Donald, B.R. (2003) 'Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum', J. Computational Biology, Vol. 10, pp.925-946.
    • (2003) J. Computational Biology , vol.10 , pp. 925-946
    • Lilien, R.H.1    Farid, H.2    Donald, B.R.3
  • 16
    • 0016495091 scopus 로고
    • Linear prediction: A tutorial review
    • Makhoul, J. (1975) 'Linear prediction: A tutorial review', Proceedings of the IEEE, Vol. 63, pp.561-580.
    • (1975) Proceedings of the IEEE , vol.63 , pp. 561-580
    • Makhoul, J.1
  • 18
    • 18744384734 scopus 로고    scopus 로고
    • Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum
    • Morris, J.S., Coombes, K.R., Koomen, J., Baggerly, K.A. and Kobayashi, R. (2005) 'Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum', Bioinformatics Vol. 21, pp.1764-1775.
    • (2005) Bioinformatics , vol.21 , pp. 1764-1775
    • Morris, J.S.1    Coombes, K.R.2    Koomen, J.3    Baggerly, K.A.4    Kobayashi, R.5
  • 19
    • 0034063779 scopus 로고    scopus 로고
    • Paweletz, C.P., Gillespie, J.W., Ornstein, D.K., Simone, N.L., Brown, M.R., Cole, K.A., Wang, Q-H., Huang, J., Hu, N., Yip, T-T., Rich, W.E., Kohn, E.C., Linehan 3, W.M., Weber, T., Taylor, P., Emmert-Buck, M.R., Liotta, L.A. and Petricoin III, E.F. (2000) 'Rapid protein display profiling of cancer progression directly from human tissue using a protein biochip', Drug Development Research, 49, pp.34-42.
    • Paweletz, C.P., Gillespie, J.W., Ornstein, D.K., Simone, N.L., Brown, M.R., Cole, K.A., Wang, Q-H., Huang, J., Hu, N., Yip, T-T., Rich, W.E., Kohn, E.C., Linehan 3, W.M., Weber, T., Taylor, P., Emmert-Buck, M.R., Liotta, L.A. and Petricoin III, E.F. (2000) 'Rapid protein display profiling of cancer progression directly from human tissue using a protein biochip', Drug Development Research, Vol. 49, pp.34-42.
  • 20
    • 0037381236 scopus 로고    scopus 로고
    • Mass spectrometry-based diagnostics: The upcoming revolution in disease detection
    • Petricoin, E.F. and Liotta, L.A. (2003) 'Mass spectrometry-based diagnostics: The upcoming revolution in disease detection', Clinical Chemistry, Vol. 49, pp.533-534.
    • (2003) Clinical Chemistry , vol.49 , pp. 533-534
    • Petricoin, E.F.1    Liotta, L.A.2
  • 22
    • 0032318171 scopus 로고    scopus 로고
    • A geostatistical model for linear prediction analysis of speech
    • Pham, T.D. and Wagner, M. (1998) 'A geostatistical model for linear prediction analysis of speech', Pattern Recognition, Vol. 31, pp. 1981-1991.
    • (1998) Pattern Recognition , vol.31 , pp. 1981-1991
    • Pham, T.D.1    Wagner, M.2
  • 23
    • 33746611643 scopus 로고    scopus 로고
    • LPC cepstral distortion measure for protein sequence comparison
    • Pham, T.D. (2006) 'LPC cepstral distortion measure for protein sequence comparison', IEEE Trans. NanoBioscience, Vol. 5, pp.83-88.
    • (2006) IEEE Trans. NanoBioscience , vol.5 , pp. 83-88
    • Pham, T.D.1
  • 25
    • 0017626208 scopus 로고
    • Application of an LPC distance measure to the voiced-unvoiced-silence detection problem
    • Rabiner, L.R. and Sambur, M.R. (1977) 'Application of an LPC distance measure to the voiced-unvoiced-silence detection problem', IEEE Trans. Acoustics, Speech, and Signal Processing, Vol. 25, pp.338-343.
    • (1977) IEEE Trans. Acoustics, Speech, and Signal Processing , vol.25 , pp. 338-343
    • Rabiner, L.R.1    Sambur, M.R.2
  • 26
    • 0021157402 scopus 로고    scopus 로고
    • Rabiner, L.R., Sondhi, M.M. and Levinson, S.E. (1984) 'A vector quantizer incorporating both LPC shape and energy', Proc. 1984 Int. Conf. Acoustics, Speech, and Signal Processing, pp. 17.1.1-17.1.4.
    • Rabiner, L.R., Sondhi, M.M. and Levinson, S.E. (1984) 'A vector quantizer incorporating both LPC shape and energy', Proc. 1984 Int. Conf. Acoustics, Speech, and Signal Processing, pp. 17.1.1-17.1.4.
  • 28
    • 27244447833 scopus 로고    scopus 로고
    • Kriging filters for multidimensional signal processing
    • Ruiz-Alzola, J., Alberola-Lopez, C. and Westin, C.F. (2005) 'Kriging filters for multidimensional signal processing', Signal Processing Vol. 85, pp.413-439.
    • (2005) Signal Processing , vol.85 , pp. 413-439
    • Ruiz-Alzola, J.1    Alberola-Lopez, C.2    Westin, C.F.3
  • 30
    • 0037029709 scopus 로고    scopus 로고
    • Proteomic analysis of nipple aspirate fluid to detect biologic markers of breast cancer
    • Sauter, E., Zhu, W., Fan, X., Wassell, R., Chervoneva, I. and Du Bois, G. (2002) 'Proteomic analysis of nipple aspirate fluid to detect biologic markers of breast cancer', Br. J. Cancer, Vol. 86, pp.1440-1443.
    • (2002) Br. J. Cancer , vol.86 , pp. 1440-1443
    • Sauter, E.1    Zhu, W.2    Fan, X.3    Wassell, R.4    Chervoneva, I.5    Du Bois, G.6
  • 31
    • 0347181849 scopus 로고    scopus 로고
    • A data review and re-assessment of ovarian cencer serum proteomic profiling
    • Sorace, J.M. and Zhan, M. (2003) 'A data review and re-assessment of ovarian cencer serum proteomic profiling', BMC Bioinformatics, Vol. 4, p.24, http://www.biomedcentral.com/1471-2105/4/24
    • (2003) BMC Bioinformatics , vol.4 , pp. 24
    • Sorace, J.M.1    Zhan, M.2
  • 32
    • 10244279272 scopus 로고    scopus 로고
    • Sample classification from protein mass spectrometry, by peak probability contrasts
    • Tibshirani, R., Hastie, T., Narasimhan, B., Soltys, S., Shi, G., Koong, A. and Le, Q-T. (2004) 'Sample classification from protein mass spectrometry, by peak probability contrasts', Bioinformatics, Vol. 20, pp.3034-3044.
    • (2004) Bioinformatics , vol.20 , pp. 3034-3044
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Soltys, S.4    Shi, G.5    Koong, A.6    Le, Q.-T.7
  • 33
    • 11444250228 scopus 로고    scopus 로고
    • Genomics and proteomics: A signal processor's tour
    • Fourth Quarter, pp
    • Vaidyanathan, P.P. (2004) 'Genomics and proteomics: A signal processor's tour', IEEE Circuits and Systems Magazine, Fourth Quarter, pp.6-29.
    • (2004) IEEE Circuits and Systems Magazine , pp. 6-29
    • Vaidyanathan, P.P.1
  • 34
    • 8144230438 scopus 로고    scopus 로고
    • Gene expression microarrays
    • Whitchurch, A.K. (2002) 'Gene expression microarrays', IEEE Potentials, Vol. 21, pp.30-34.
    • (2002) IEEE Potentials , vol.21 , pp. 30-34
    • Whitchurch, A.K.1
  • 35
    • 0141738784 scopus 로고    scopus 로고
    • Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data
    • Wu, B., Abbott, T., Fishman, D., McMurray, W., Mor, G., Stone, K., Ward, D., Williams, K. and Zhao, H. (2003) 'Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data', Bioinformatics, Vol. 19, pp. 1636-1643.
    • (2003) Bioinformatics , vol.19 , pp. 1636-1643
    • Wu, B.1    Abbott, T.2    Fishman, D.3    McMurray, W.4    Mor, G.5    Stone, K.6    Ward, D.7    Williams, K.8    Zhao, H.9
  • 36
    • 0038662530 scopus 로고    scopus 로고
    • Proteomic applications for the early detection of cancer
    • Wulfkuhle, J.D., Liotta, L.A. and Petricoin, E.F. (2003). 'Proteomic applications for the early detection of cancer', Nature, Vol. 3, pp.267-275.
    • (2003) Nature , vol.3 , pp. 267-275
    • Wulfkuhle, J.D.1    Liotta, L.A.2    Petricoin, E.F.3
  • 37
    • 84924149446 scopus 로고    scopus 로고
    • Cambridge University Press, New York
    • Xiong, J. (2006). Essential Bioinformatics, Cambridge University Press, New York.
    • (2006) Essential Bioinformatics
    • Xiong, J.1
  • 38
    • 19544394460 scopus 로고    scopus 로고
    • Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data
    • Yu, J.S., Ongarello, S., Fiedler, R., Chen, X.W., Toffolo, G., Cobelli, C. and Trajanoski, Z. (2005) 'Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data', Bioinformatics, Vol. 21, pp.2200-2209.
    • (2005) Bioinformatics , vol.21 , pp. 2200-2209
    • Yu, J.S.1    Ongarello, S.2    Fiedler, R.3    Chen, X.W.4    Toffolo, G.5    Cobelli, C.6    Trajanoski, Z.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.