-
1
-
-
0033954256
-
The Protein Data Bank
-
Berman,H.M., Westbrook,J.D., Feng,Z., Gilliland,G.L., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.D.2
Feng, Z.3
Gilliland, G.L.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
2
-
-
0028232955
-
Searching protein structure databases has come of age
-
Holm,L. and Sander,C. (1994) Searching protein structure databases has come of age. Proteins, 19, 165-173.
-
(1994)
Proteins
, vol.19
, pp. 165-173
-
-
Holm, L.1
Sander, C.2
-
3
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov,I.N. and Bourne,P.E. (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng., 11, 739-747.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
4
-
-
25144432432
-
Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm
-
Gáspári,Z., Vlahovicek,K. and Pongor,S. (2005) Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm. Bioinformatics, 21, 3322-3323.
-
(2005)
Bioinformatics
, vol.21
, pp. 3322-3323
-
-
Gáspári, Z.1
Vlahovicek, K.2
Pongor, S.3
-
5
-
-
0029936121
-
Surprising similarities in structure comparison
-
Gibrat,J.-F., Madej,T. and Bryant,S.H. (1996) Surprising similarities in structure comparison. Curr. Opin. Struct. Biol., 6, 377-385.
-
(1996)
Curr. Opin. Struct. Biol.
, vol.6
, pp. 377-385
-
-
Gibrat, J.-F.1
Madej, T.2
Bryant, S.H.3
-
6
-
-
0033613813
-
Recognition of spatial motifs in protein structures
-
Kleywegt,G.J. (1999) Recognition of spatial motifs in protein structures. J. Mol. Biol., 285, 1887-1897.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1887-1897
-
-
Kleywegt, G.J.1
-
7
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel,E. and Henrick,K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr., D60, 2256-2268.
-
(2004)
Acta Crystallogr.
, vol.D60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
8
-
-
0032906118
-
Motif-based searching in TOPS protein topology databases
-
Gilbert,D.R., Westhead,D.R., Nagano,N. and Thornton,J.M. (1999) Motif-based searching in TOPS protein topology databases. Bioinformatics, 15, 317-326.
-
(1999)
Bioinformatics
, vol.15
, pp. 317-326
-
-
Gilbert, D.R.1
Westhead, D.R.2
Nagano, N.3
Thornton, J.M.4
-
9
-
-
24344476038
-
YAKUSA: A fast structural database scanning method
-
Carpentier,M., Brouillet,S. and Pothier,J. (2005) YAKUSA: a fast structural database scanning method. Proteins, 61, 137-151.
-
(2005)
Proteins
, vol.61
, pp. 137-151
-
-
Carpentier, M.1
Brouillet, S.2
Pothier, J.3
-
10
-
-
33749562079
-
A fast method for motif detection and searching in a protein structure database
-
Technical Report TUM-I0314 Inst. f. Informatik, TU München
-
Buchner,A. and Täubig,H. (2003) A fast method for motif detection and searching in a protein structure database. Technical Report TUM-I0314, Inst. f. Informatik, TU München.
-
(2003)
-
-
Buchner, A.1
Täubig, H.2
-
11
-
-
0001704377
-
On-line construction of suffix trees
-
Ukkonen,E. (1995) On-line construction of suffix trees. Algorithmica, 14, 249-260.
-
(1995)
Algorithmica
, vol.14
, pp. 249-260
-
-
Ukkonen, E.1
-
12
-
-
0028964865
-
Generalized suffix trees for biological sequence data: Applications and implementation
-
In (Biotechnology Computing) IEEE
-
Bieganski,P., Riedl,J., Carlis,J.V. and Retzel,E.F. (1994) Generalized suffix trees for biological sequence data: applications and implementation. In Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS'94), Vol. V (Biotechnology Computing), pp. 35-44. IEEE.
-
(1994)
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS'94)
, vol.5
, pp. 35-44
-
-
Bieganski, P.1
Riedl, J.2
Carlis, J.V.3
Retzel, E.F.4
-
13
-
-
85134561091
-
A method for fast approximate searching of polypeptide structures in the PDB
-
In of Lecture Notes in Informatics, Köllen Verlag
-
Täubig,H., Buchner,A. and Griebsch,J. (2004) A method for fast approximate searching of polypeptide structures in the PDB. In Proceedings of the German Conference on Bioinformatics (GCB'04), Vol. P-53 of Lecture Notes in Informatics, Köllen Verlag, pp. 65-74.
-
(2004)
Proceedings of the German Conference on Bioinformatics (GCB'04)
, vol.P-53
, pp. 65-74
-
-
Täubig, H.1
Buchner, A.2
Griebsch, J.3
|