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Volumn 20, Issue 1, 2009, Pages 55-66

Proteomic and molecular investigation on the physiological adaptation of Comamonas sp. strain CNB-1 growing on 4-chloronitrobenzene

Author keywords

4 Chloronitrobenzene degradation; Comamonas sp. strain CNB 1; Pathway; Proteome

Indexed keywords

4-CHLORONITROBENZENE DEGRADATION; COMAMONAS SP. STRAIN CNB-1; DEGRADATIVE PATHWAYS; E. COLI; GENE PRODUCTS; MOLECULAR INVESTIGATIONS; MOLECULAR TOOLS; NITROGEN SOURCES; PATHWAY; PHYSIOLOGICAL ADAPTATIONS; PHYSIOLOGICAL RESPONSES; PROTEOME; PROTEOMES; SOLE CARBONS; SYNTHESIS OF; TRICARBOXYLIC ACID CYCLES; VALERIC ACIDS;

EID: 58149177511     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-008-9199-x     Document Type: Article
Times cited : (21)

References (28)
  • 1
    • 0033910753 scopus 로고    scopus 로고
    • Arrangement and regulation of the genes for meta-pathway enzymes required for degradation of phenol in Comamonas testosteroni TA441
    • H Arai T Ohishi MY Chang T Kudo 2000 Arrangement and regulation of the genes for meta-pathway enzymes required for degradation of phenol in Comamonas testosteroni TA441 Microbiology 146 1707 1715
    • (2000) Microbiology , vol.146 , pp. 1707-1715
    • Arai, H.1    Ohishi, T.2    Chang, M.Y.3    Kudo, T.4
  • 2
    • 0037296905 scopus 로고    scopus 로고
    • Multiple polypeptide forms observed in two-dimensional gels of Methylococcus capsulatus (Bath) polypeptides are generated during the separation procedure
    • 10.1002/elps.200390091
    • FS Berven OA Karlsen JC Murrell HB Jensen 2003 Multiple polypeptide forms observed in two-dimensional gels of Methylococcus capsulatus (Bath) polypeptides are generated during the separation procedure Electrophoresis 24 757 761 10.1002/elps.200390091
    • (2003) Electrophoresis , vol.24 , pp. 757-761
    • Berven, F.S.1    Karlsen, O.A.2    Murrell, J.C.3    Jensen, H.B.4
  • 3
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • 10.1016/0003-2697(76)90527-3
    • MM Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254 10.1016/0003-2697(76)90527-3
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 4
    • 0016156623 scopus 로고
    • Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
    • 10.1007/BF00696222
    • E Dorn M Hellwig W Reineke HJ Knackmuss 1974 Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad Arch Microbiol 99 61 70 10.1007/BF00696222
    • (1974) Arch Microbiol , vol.99 , pp. 61-70
    • Dorn, E.1    Hellwig, M.2    Reineke, W.3    Knackmuss, H.J.4
  • 5
    • 70449622561 scopus 로고    scopus 로고
    • Media containing aromatic compounds induce peculiar proteins in Acinetobacter radioresistens, as revealed by proteome analysis
    • 10.1002/1522-2683(200105)22:9≤1705::AID-ELPS1705≥3.0.CO;2-0
    • MG Giuffrida E Pessione R Mazzoli G Dellavalle C Barello A Conti 2001 Media containing aromatic compounds induce peculiar proteins in Acinetobacter radioresistens, as revealed by proteome analysis Electrophoresis 22 1705 1711 10.1002/1522-2683(200105)22:9≤1705::AID-ELPS1705≥3.0.CO;2-0
    • (2001) Electrophoresis , vol.22 , pp. 1705-1711
    • Giuffrida, M.G.1    Pessione, E.2    Mazzoli, R.3    Dellavalle, G.4    Barello, C.5    Conti, A.6
  • 6
    • 0036374159 scopus 로고    scopus 로고
    • Enhanced detection and characterization of protocatechuate 3,4-dioxygenase in Acinetobacter lwoffii K24 by proteomics using a column separation
    • 10.1016/S0006-291X(02)00778-7
    • HY Kahng K Cho SY Song SJ Kim SH Leem SI Kim 2002 Enhanced detection and characterization of protocatechuate 3,4-dioxygenase in Acinetobacter lwoffii K24 by proteomics using a column separation Biochem Biophys Res Commun 295 903 909 10.1016/S0006-291X(02)00778-7
    • (2002) Biochem Biophys Res Commun , vol.295 , pp. 903-909
    • Kahng, H.Y.1    Cho, K.2    Song, S.Y.3    Kim, S.J.4    Leem, S.H.5    Kim, S.I.6
  • 7
    • 0032914115 scopus 로고    scopus 로고
    • Initial reactions in the biodegradation of 1-chloro-4-nitrobenzene by a newly isolated bacterium, strain LW1
    • E Katsivela V Wray DH Pieper RM Wittich 1999 Initial reactions in the biodegradation of 1-chloro-4-nitrobenzene by a newly isolated bacterium, strain LW1 Appl Environ Microbiol 65 1405 1412
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1405-1412
    • Katsivela, E.1    Wray, V.2    Pieper, D.H.3    Wittich, R.M.4
  • 8
    • 0036134196 scopus 로고    scopus 로고
    • Proteome analysis of aniline-induced proteins in Acinetobacter lwoffii K24
    • 10.1007/s00284-001-0075-8
    • SI Kim SJ Kim MH Nam S Kim KS Ha KH Oh 2002 Proteome analysis of aniline-induced proteins in Acinetobacter lwoffii K24 Curr Microbiol 44 61 66 10.1007/s00284-001-0075-8
    • (2002) Curr Microbiol , vol.44 , pp. 61-66
    • Kim, S.I.1    Kim, S.J.2    Nam, M.H.3    Kim, S.4    Ha, K.S.5    Oh, K.H.6
  • 9
    • 2342666128 scopus 로고    scopus 로고
    • Proteomic analysis of Acinetobacter lwoffii K24 by 2-D gel electrophoresis and electrospray ionization quadrupole-time of flight mass spectrometry
    • 10.1016/j.mimet.2004.02.007
    • EA Kim JY Kim SJ Kim KR Park HJ Chung SH Leem 2004 Proteomic analysis of Acinetobacter lwoffii K24 by 2-D gel electrophoresis and electrospray ionization quadrupole-time of flight mass spectrometry J Microbiol Methods 57 337 349 10.1016/j.mimet.2004.02.007
    • (2004) J Microbiol Methods , vol.57 , pp. 337-349
    • Kim, E.A.1    Kim, J.Y.2    Kim, S.J.3    Park, K.R.4    Chung, H.J.5    Leem, S.H.6
  • 10
    • 8744256465 scopus 로고    scopus 로고
    • Proteome analysis of Pseudomonas sp. K82 biodegradation pathways
    • 10.1002/pmic.200400977
    • SI Kim JY Kim SH Yun JH Kim SH Leem C Lee 2004 Proteome analysis of Pseudomonas sp. K82 biodegradation pathways Proteomics 4 3610 3621 10.1002/pmic.200400977
    • (2004) Proteomics , vol.4 , pp. 3610-3621
    • Kim, S.I.1    Kim, J.Y.2    Yun, S.H.3    Kim, J.H.4    Leem, S.H.5    Lee, C.6
  • 11
    • 33644540488 scopus 로고    scopus 로고
    • Analysis of aromatic catabolic pathways in Pseudomonas putida KT2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis
    • 10.1002/pmic.200500329
    • YH Kim K Cho SH Yun JY Kim KH Kwon JS Yoo 2006 Analysis of aromatic catabolic pathways in Pseudomonas putida KT2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis Proteomics 6 1301 1318 10.1002/pmic.200500329
    • (2006) Proteomics , vol.6 , pp. 1301-1318
    • Kim, Y.H.1    Cho, K.2    Yun, S.H.3    Kim, J.Y.4    Kwon, K.H.5    Yoo, J.S.6
  • 12
    • 33644943635 scopus 로고    scopus 로고
    • Analysis of the proteome of Pseudomonas putida KT2440 grown on different sources of carbon and energy
    • 10.1111/j.1462-2920.2005.00913.x
    • L Kurbatov D Albrecht H Herrmann L Petruschka 2006 Analysis of the proteome of Pseudomonas putida KT2440 grown on different sources of carbon and energy Environ Microbiol 8 466 478 10.1111/j.1462-2920.2005.00913.x
    • (2006) Environ Microbiol , vol.8 , pp. 466-478
    • Kurbatov, L.1    Albrecht, D.2    Herrmann, H.3    Petruschka, L.4
  • 13
    • 34147158722 scopus 로고    scopus 로고
    • A novel deaminase involved in chloronitrobenzene and nitrobenzene degradation with Comamonas sp. strain CNB-1
    • 10.1128/JB.01762-06
    • L Liu JF Wu YF Ma SY Wang GP Zhao SJ Liu 2007 A novel deaminase involved in chloronitrobenzene and nitrobenzene degradation with Comamonas sp. strain CNB-1 J Bacteriol 189 2677 2682 10.1128/JB.01762-06
    • (2007) J Bacteriol , vol.189 , pp. 2677-2682
    • Liu, L.1    Wu, J.F.2    Ma, Y.F.3    Wang, S.Y.4    Zhao, G.P.5    Liu, S.J.6
  • 14
    • 0034855145 scopus 로고    scopus 로고
    • Investigation of charge variants of rViscumin by two-dimensional gel electrophoresis and mass spectrometry
    • 10.1002/1522-2683(200108)22:14≤2888::AID-ELPS2888≥3.0.CO;2-C
    • P Lutter HE Meyer M Langer K Witthohn W Dormeyer A Sickmann 2001 Investigation of charge variants of rViscumin by two-dimensional gel electrophoresis and mass spectrometry Electrophoresis 22 2888 2897 10.1002/1522-2683(200108)22:14≤2888::AID-ELPS2888≥3.0.CO;2-C
    • (2001) Electrophoresis , vol.22 , pp. 2888-2897
    • Lutter, P.1    Meyer, H.E.2    Langer, M.3    Witthohn, K.4    Dormeyer, W.5    Sickmann, A.6
  • 15
    • 34547188121 scopus 로고    scopus 로고
    • Nucleotide sequence of plasmid pCNB1 from Comamonas strain CNB-1 reveals novel genetic organization and evolution for 4-chloronitrobenzene degradation
    • 10.1128/AEM.00616-07
    • YF Ma JF Wu SY Wang CY Jiang Y Zhang SW Qi 2007 Nucleotide sequence of plasmid pCNB1 from Comamonas strain CNB-1 reveals novel genetic organization and evolution for 4-chloronitrobenzene degradation Appl Environ Microbiol 73 4477 4483 10.1128/AEM.00616-07
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4477-4483
    • Ma, Y.F.1    Wu, J.F.2    Wang, S.Y.3    Jiang, C.Y.4    Zhang, Y.5    Qi, S.W.6
  • 16
    • 0035997276 scopus 로고    scopus 로고
    • Profiling the alkaline membrane proteome of Caulobacter crescentus with two-dimensional electrophoresis and mass spectrometry
    • 10.1002/1615-9861(200207)2:7≤899::AID-PROT899≥3.0.CO;2-Y
    • MP Molloy ND Phadke H Chen R Tyldesley DE Garfin JR Maddock 2002 Profiling the alkaline membrane proteome of Caulobacter crescentus with two-dimensional electrophoresis and mass spectrometry Proteomics 2 899 910 10.1002/1615-9861(200207)2:7≤899::AID-PROT899≥3.0.CO;2-Y
    • (2002) Proteomics , vol.2 , pp. 899-910
    • Molloy, M.P.1    Phadke, N.D.2    Chen, H.3    Tyldesley, R.4    Garfin, D.E.5    Maddock, J.R.6
  • 17
    • 0032987151 scopus 로고    scopus 로고
    • Degradation of chloronitrobenzenes by a coculture of Pseudomonas putida and a Rhodococcus sp.
    • HS Park SJ Lim YK Chang AG Livingston HS Kim 1999 Degradation of chloronitrobenzenes by a coculture of Pseudomonas putida and a Rhodococcus sp. Appl Environ Microbiol 65 1083 1091
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1083-1091
    • Park, H.S.1    Lim, S.J.2    Chang, Y.K.3    Livingston, A.G.4    Kim, H.S.5
  • 18
    • 35649025273 scopus 로고    scopus 로고
    • Comparative proteomes of Corynebacterium glutamicum grown on aromatic compounds revealed novel proteins involved in aromatic degradation and a clear link between aromatic catabolism and gluconeogenesis via fructose-1, 6-bisphosphatase
    • 10.1002/pmic.200700481
    • SW Qi MT Chaudhry Y Zhang B Meng Y Huang KX Zhao 2007 Comparative proteomes of Corynebacterium glutamicum grown on aromatic compounds revealed novel proteins involved in aromatic degradation and a clear link between aromatic catabolism and gluconeogenesis via fructose-1, 6-bisphosphatase Proteomics 7 3775 3787 10.1002/pmic.200700481
    • (2007) Proteomics , vol.7 , pp. 3775-3787
    • Qi, S.W.1    Chaudhry, M.T.2    Zhang, Y.3    Meng, B.4    Huang, Y.5    Zhao, K.X.6
  • 19
    • 24344489015 scopus 로고    scopus 로고
    • Proteomic analysis reveals the participation of energy- and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene
    • 10.1128/JB.187.17.5937-5945.2005
    • A Segura P Godoy P van Dillewijn A Hurtado N Arroyo S Santacruz 2005 Proteomic analysis reveals the participation of energy- and stress-related proteins in the response of Pseudomonas putida DOT-T1E to toluene J Bacteriol 187 5937 5945 10.1128/JB.187.17.5937-5945.2005
    • (2005) J Bacteriol , vol.187 , pp. 5937-5945
    • Segura, A.1    Godoy, P.2    Van Dillewijn, P.3    Hurtado, A.4    Arroyo, N.5    Santacruz, S.6
  • 20
    • 33751348735 scopus 로고    scopus 로고
    • Bacterial pathways for degradation of nitroaromatics
    • 10.1039/b502796a
    • ZC Symons NC Bruce 2006 Bacterial pathways for degradation of nitroaromatics Nat Prod Rep 23 845 850 10.1039/b502796a
    • (2006) Nat Prod Rep , vol.23 , pp. 845-850
    • Symons, Z.C.1    Bruce, N.C.2
  • 21
    • 33750591905 scopus 로고    scopus 로고
    • Proteomic and transcriptional characterization of aromatic degradation pathways in Rhodoccocus sp. strain TFB
    • 10.1002/pmic.200500422
    • L Tomas-Gallardo I Canosa E Santero E Camafeita E Calvo JA Lopez 2006 Proteomic and transcriptional characterization of aromatic degradation pathways in Rhodoccocus sp. strain TFB Proteomics 6 S119 S132 10.1002/pmic.200500422
    • (2006) Proteomics , vol.6
    • Tomas-Gallardo, L.1    Canosa, I.2    Santero, E.3    Camafeita, E.4    Calvo, E.5    Lopez, J.A.6
  • 22
    • 0028077615 scopus 로고
    • Genetic adaptation of bacteria to chlorinated aromatic compounds
    • 10.1111/j.1574-6976.1994.tb00137.x
    • JR van der Meer 1994 Genetic adaptation of bacteria to chlorinated aromatic compounds FEMS Microbiol Rev 15 239 249 10.1111/j.1574-6976.1994. tb00137.x
    • (1994) FEMS Microbiol Rev , vol.15 , pp. 239-249
    • Van Der Meer, J.R.1
  • 23
    • 12444261679 scopus 로고    scopus 로고
    • A novel 2-aminophenol 1, 6-dioxygenase involved in the degradation of p-chloronitrobenzene by Comamonas strain CNB-1: Purification, properties, genetic cloning and expression in Escherichia coli
    • 10.1007/s00203-004-0738-5
    • JF Wu CW Sun CY Jiang ZP Liu SJ Liu 2005 A novel 2-aminophenol 1, 6-dioxygenase involved in the degradation of p-chloronitrobenzene by Comamonas strain CNB-1: purification, properties, genetic cloning and expression in Escherichia coli Arch Microbiol 183 1 8 10.1007/s00203-004-0738-5
    • (2005) Arch Microbiol , vol.183 , pp. 1-8
    • Wu, J.F.1    Sun, C.W.2    Jiang, C.Y.3    Liu, Z.P.4    Liu, S.J.5
  • 24
    • 33644951182 scopus 로고    scopus 로고
    • Novel partial reductive pathway for 4-chloronitrobenzene and nitrobenzene degradation in Comamonas sp. strain CNB-1
    • 10.1128/AEM.72.3.1759-1765.2006
    • JF Wu CY Jiang BJ Wang YF Ma ZP Liu SJ Liu 2006 Novel partial reductive pathway for 4-chloronitrobenzene and nitrobenzene degradation in Comamonas sp. strain CNB-1 Appl Environ Microbiol 72 1759 1765 10.1128/AEM.72.3.1759-1765.2006
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1759-1765
    • Wu, J.F.1    Jiang, C.Y.2    Wang, B.J.3    Ma, Y.F.4    Liu, Z.P.5    Liu, S.J.6
  • 25
    • 36448973449 scopus 로고    scopus 로고
    • Response to arsenate stress by Comamonas sp. strain CNB-1 at genetic and proteomic levels
    • 10.1099/mic.0.2007/011403-0
    • Y Zhang YF Ma SW Qi B Meng MT Chaudhry SQ Liu 2007 Response to arsenate stress by Comamonas sp. strain CNB-1 at genetic and proteomic levels Microbiology 153 3713 3721 10.1099/mic.0.2007/011403-0
    • (2007) Microbiology , vol.153 , pp. 3713-3721
    • Zhang, Y.1    Ma, Y.F.2    Qi, S.W.3    Meng, B.4    Chaudhry, M.T.5    Liu, S.Q.6
  • 26
    • 3042772559 scopus 로고    scopus 로고
    • Proteome analysis of gentisate-induced response in Pseudomonas alcaligenes NCIB 9867
    • 10.1002/pmic.200300730
    • B Zhao CC Yeo CC Lee A Geng FT Chew CL Poh 2004 Proteome analysis of gentisate-induced response in Pseudomonas alcaligenes NCIB 9867 Proteomics 4 2028 2036 10.1002/pmic.200300730
    • (2004) Proteomics , vol.4 , pp. 2028-2036
    • Zhao, B.1    Yeo, C.C.2    Lee, C.C.3    Geng, A.4    Chew, F.T.5    Poh, C.L.6
  • 27
    • 18844410520 scopus 로고    scopus 로고
    • Proteome investigation of the global regulatory role of sigma 54 in response to gentisate induction in Pseudomonas alcaligenes NCIMB 9867
    • 10.1002/pmic.200401081
    • B Zhao CC Yeo CL Poh 2005 Proteome investigation of the global regulatory role of sigma 54 in response to gentisate induction in Pseudomonas alcaligenes NCIMB 9867 Proteomics 5 1868 1876 10.1002/pmic.200401081
    • (2005) Proteomics , vol.5 , pp. 1868-1876
    • Zhao, B.1    Yeo, C.C.2    Poh, C.L.3
  • 28
    • 33749030448 scopus 로고    scopus 로고
    • Plasmid-mediated degradation of 4-chloronitrobenzene by newly isolated Pseudomonas putida strain ZWL73
    • 10.1007/s00253-006-0345-2
    • D Zhen H Liu SJ Wang JJ Zhang F Zhao NY Zhou 2006 Plasmid-mediated degradation of 4-chloronitrobenzene by newly isolated Pseudomonas putida strain ZWL73 Appl Microbiol Biotechnol 72 797 803 10.1007/s00253-006-0345-2
    • (2006) Appl Microbiol Biotechnol , vol.72 , pp. 797-803
    • Zhen, D.1    Liu, H.2    Wang, S.J.3    Zhang, J.J.4    Zhao, F.5    Zhou, N.Y.6


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