Proteomic analysis of Acinetobacter lwoffii K24 by 2-D gel electrophoresis and electrospray ionization quadrupole-time of flight mass spectrometry

Journal of Microbiological Methods

Volumn 57, Issue 3, 2004, Pages 337-349

  Kim, Eun A ^a,b   Kim, Jin Young ^a   Kim, Soo Jung ^a   Park, Kyeong Ryang ^c   Chung, Hae Jin ^d   Leem, Sun Hee ^b   Kim, Seung Il ^a  

^a Korea Basic Science Institute (KBSI)   (South Korea)

^b Dong A University   (South Korea)

^c Hannam University   (South Korea)

^d Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

2 D gel electrophoresis; Acinetobacter lwoffii; Aniline induced proteome analysis; ESI Q TOF mass spectrometry; K24

Indexed keywords

BACTERIAL PROTEIN; PROTEOME; SUCCINIC ACID;

ACIDITY; ACINETOBACTER LWOFFII; ALKALINITY; AMINO ACID SEQUENCE; ARTICLE; BACTERIUM CULTURE; CONTROLLED STUDY; ELECTROSPRAY MASS SPECTROMETRY; GRAM NEGATIVE BACTERIUM; INTERMETHOD COMPARISON; NONHUMAN; NUCLEOTIDE SEQUENCE; PH MEASUREMENT; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN EXPRESSION; PROTEOMICS; TIME OF FLIGHT MASS SPECTROMETRY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ACINETOBACTER; AMINO ACID SEQUENCE; ANILINE COMPOUNDS; BACTERIAL PROTEINS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; MOLECULAR SEQUENCE DATA; PROTEOME; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SUCCINIC ACID;

ACINETOBACTER; ACINETOBACTER LWOFFII; BACTERIA (MICROORGANISMS);

EID: 2342666128     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2004.02.007     Document Type: Article

References (25)

1. Aoki K., Ohtsuka K., Shinke R., Nishira H. Isolation of aniline assimilation bacteria and physiological characterization of aniline biodegradation in Rhodococcus erythropolis AN13. Agric. Biol. Chem. 47:1983;2569-2575
2. Biemann K. Sequencing of peptide by tandem mass spectrometry and high energy collision-induced dissociation. Methods Enzymol. 193:1990;455-479
3. Bradford M.M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:1976;248-254
4. Cash P. Characterization of bacterial proteome by two-dimensional electrophoresis. Anal. Chim. Acta. 372:1998;121-145
5. Gooley A.A., Ou K., Russell J., Wilkins M.R., Sanchez J.C., Hochstrasser D.F., Williams K.L. A role for Edman degradation in proteome studies. Electrophoresis. 18:1997;1068-1072
6. Görg A., Obermaier C., Boguth G., Harder A., Scheibe B., Wildgruber R., Weiss W. The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis. 21:2000;1037-1053
7. Graves P.R., Haystead T.A.J. Molecular biologist's guide to proteomics. Microbiol. Mol. Biol. Rev. 66:2002;39-63
8. Heukeshoven J., Dernick R. Simplified method for silver staining of proteins in polyacrylamide gels and the mechanism of silver staining. Electrophoresis. 6:1985;103-112
9. Hinteregger C., Loidl M., Streichsbier F. Characterization of isofunctional ring-cleaving enzymes in aniline and 3-chloroaniline degradation by Pseudomonas acidovorans CA28. FEMS Microbiol. Lett. 97:1992;261-266
10. Kahng H.Y., Cho C., Kim S.J., Song S.Y., Leem S.H., Kim S.I. Enhanced detection and characterization of protocatechuate 3, 4-dioxygenase in Acinetobacter lwoffii K24 by proteomics using a column separation. Biochem. Biophys. Res. Commun. 295:2002;903-909
11. 2 gene cluster in Acinetobacter lwoffii K24. J. Biosci. Bioeng. 88:1999;250-257
12. 1 in Acinetobacter lwoffii K24 capable of aniline degradation. Biochem. Biophys. Res. Commun. 288:2001;645-649
13. Kim J.Y., Kim K.W., Kwon H.J., Lee D.W., Yoo J.S. Probing lysine acetylation with a modification-specific marker ion using high-performance liquid chromatography/Electrospray-mass spectrometry with collision-induced dissociation. Anal. Chem. 74:2002;5443-5449
14. Kim S.I., Kim S.J., Nam M.H., Kim S., Ha K.S., Oh K.H., Yoo J.S., Park Y.M. Proteome analysis of aniline-induced proteins in Acinetobacter lwoffii K24. Curr. Microbiol. 44:2002;61-66
15. Lambert L.A., Abshire K., Blankenhorn D., Slonczewski J.L. Proteins induced in Escherichia coli by benzoic acid. J. Bacteriol. 179:1997;7595-7599
16. Liu Z., Yang H., Huang Z., Zhou P., Liu S.J. Degradation of aniline by newly isolated, extremely aniline-tolerant Delftia sp. AN3. Appl. Microbiol. Biotechnol. 58:2002;679-682
17. Lupi C.G., Colangelo T., Mason C.A. Two-dimensional gel electrophoresis analysis of the response of Pseudomoans putida KT2442 to 2-chlorophenol. Appl. Environ. Microbiol. 61:1995;2863-2872
18. Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis. 19:1998;837-844
19. Murakumi S., Takashima A., Takemoto J., Takenaka S., Shinke R., Aoki K. Cloning and sequence analysis of two catechol-degrading gene clusters from the aniline-assimilating bacterium Frateuria species ANA-18. Gene. 226:1999;189-198
20. Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H., Martins V.A., Fouts D.E., Gill S.R., Pop M., Holmes M., Brinkac L., Beanan M., DeBoy R.T., Daugherty S., Kolonay J., Madupu R., Nelson W., White O., Peterson J., Khouri H., Hance I., Lee P.C., Holtzapple E., Scanlan D., Tran K., Moazzez A., Utterback T., Rizzo M., Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D., Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N., Dusterhoft A., Tummler B., Fraser C.M. Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. Environ. Microbiol. 4:2002;799-808
21. Pessione E., Giuffrida M.G., Prunotto L., Barello C., Mazzoli R., Fortunato D., Conti A., Giunta C. Membrane proteome of Acinetobacter radioresistens S13 during aromatic exposure. Proteomics. 3:2003;1070-1076
22. Shevchenko A., Sunyaev S., Loboda A., Shevchenko A., Bork P., Ens W., Standing K.G. Charting the proteomes of organisms with unsequenced genomes by MALDI-quadrupole time-of-flight mass spectrometry and BLAST homology searching. Anal. Chem. 73:2001;1917-1926
23. Simon W.J., Hall J.J., Suzuki I., Murata N., Slabas A.R. Proteomic study of the soluble proteins from the unicellular cyanobacterium Synechocystis sp. PCC6803 using automated matrix assisted laser desorption/ionization-time of flight peptide mass fingerprinting. Proteomics. 2:2002;1735-1742
24. Wloters D.A., Washburn M.P., Yates J.R. III An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem. 73:2001;5683-5690
25. Wu S.L., Amato H., Biringer R., Choudhary G., Shieh P., Hancock W.S. Targeted proteomics of low-level proteins in human plasma by LC/MSn: using human growth hormone as a model system. J. Proteome Res. 1:2002;459-465