Mass spectrometric analysis of type 1 inositol 1,4,5-trisphosphate receptor ubiquitination

Journal of Biological Chemistry

Volumn 283, Issue 51, 2008, Pages 35319-35328

  Sliter, Danielle A ^a   Kubota, Kazuishi ^b   Kirkpatrick, Donald S ^b,c   Alzayady, Kamil J ^a,d   Gygi, Steven P ^b   Wojcikiewicz, Richard J H ^a,e  

^a SUNY UPSTATE MEDICAL UNIVERSITY   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c GENENTECH INC   (United States)

^d STONY BROOK UNIVERSITY   (United States)

^e State University of New York Upstate Medical University: College of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOLS; AMINO ACIDS; ANIMAL CELL CULTURE; CALCIUM; CHAINS; DEGRADATION; MAMMALS; PROTEINS; SUGARS;

CALCIUM MOBILIZATIONS; COMPLEX PROCESSES; ENDOGENOUS ENZYMES; ENDOGENOUS SIGNALING; ENDOPLASMIC RETICULUM MEMBRANES; EXTRACELLULAR STIMULUS; MAMMALIAN CELLS; MASS SPECTROMETRIC ANALYSIS; PROTEASOME; RECEPTOR UBIQUITINATION; REGULATORY DOMAINS; SURFACE REGIONS; TETRAMER; TETRAMERIC CHANNELS; TRIS PHOSPHATES; UBIQUITIN; UBIQUITINATION;

INTERNET PROTOCOLS;

INOSITOL 1,4,5 TRISPHOSPHATE RECEPTOR; LYSINE; RECEPTOR SUBUNIT; UBIQUITIN;

ANIMAL CELL; ARTICLE; CONTROLLED STUDY; FIBROBLAST; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; RAT; STOICHIOMETRY; UBIQUITINATION;

ANIMALS; CALCIUM; CELL LINE; ENDOPLASMIC RETICULUM; INOSITOL 1,4,5-TRISPHOSPHATE RECEPTORS; MASS SPECTROMETRY; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEIN STRUCTURE, TERTIARY; RATS; SIGNAL TRANSDUCTION; UBIQUITIN; UBIQUITINATION;

MAMMALIA;

EID: 58149093832     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M807288200     Document Type: Article

References (47)

1. Foskett, J. K., White, C., Cheung, K. H., and Mak, D. O. D. (2007) Physiol. Rev. 87, 593-658
2. Mikoshiba, K. (2007) J. Neurochem. 102, 1426-1446
3. Taylor, C., da Fonseca, P. A., and Morris, E. P. (2004) Trends Biochem. Sci. 29, 210-219
4. Bokkala, S., and Joseph, S. K. (1997) J. Biol. Chem. 272, 12454-12461
5. Oberdorf, J., Webster, J. M., Zhu, C. C., Luo, S. G., and Wojcikiewicz, R. J. H. (1999) Biochem. J. 339, 453-461
6. Wojcikiewicz, R. J. H. (2004) Trends Pharmacol. Sci. 25, 35-41
7. Wojcikiewicz, R. J. H., Xu, Q., Webster, J. M., Alzayady, K., and Gao, C. (2003) J. Biol. Chem. 278, 940-947
8. Wojcikiewicz, R. J. H. (1995) J. Biol. Chem. 270, 11678-11683
9. Wojcikiewicz, R. J. H., Ernst, S. A., and Yule, D. (1999) Gastroenterology 116, 1194-1201
10. Meusser, B., Hirsch, C., Jarosch, E., and Sommer, T. (2005) Nat. Cell Biol. 7, 766-772
11. Carvalho, P., Goder, V., and Rapoport, T. A. (2006) Cell 126, 361-373
12. Tiwari, S., and Weissman, A. M. (2001) J. Biol. Chem. 276, 16193-16200
13. Ye, Y., Meyer, H. H., and Rapoport, T. A. (2001) Nature 414, 652-656
14. Alzayady, K. J., Panning, M. M., Kelley, G. G., and Wojcikiewicz, R. J. H. (2005) J. Biol. Chem. 280, 34530-34537
15. Webster, J. M., Tiwari, S., Weissman, A. M., and Wojcikiewicz, R. J. H. (2003) J. Biol. Chem. 278, 38238-38246
16. Fang, S., and Weissman, A. M. (2004) Cell. Mol. Life Sci. 61, 1546-1561
17. Ikeda, F., and Dikic, I. (2008) EMBO Rep. 9, 536-542
18. Pickart, C. M., and Fushman, D. (2004) Curr. Opin. Chem. Biol. 8, 610-616
19. Love, K., Catic, A., Schlieker, C., and Ploegh, H. L. (2007) Nat. Chem. Biol. 3, 697-705
20. Ventii, K. H., and Wilkinson, K. D. (2008) Biochem. J. 414, 161-175
21. Catic, A., Collins, C., Church, G. M., and Ploegh, H. L. (2004) Bioinformatics 20, 3302-3307
22. Passmore, L. A., and Barford, D. (2004) Biochem. J. 379, 513-525
23. Peng, J., Schwartz, D., Elias, J. E., Thoreen, C. C., Cheng, D., Marsischky, G., Roelofs, J., Finley, D., and Gygi, S. P. (2003) Nat. Biotech. 21, 921-926
24. Kirkpatrick, D. S., Denison, C., and Gygi, S. P. (2005) Nat. Cell Biol. 7, 750-757
25. Kirkpatrick, D. S., Gerber, S. A., and Gygi, S. P. (2005) Methods 35, 265-273
26. Huang, F., Kirkpatrick, D., Jiang, X., Gygi, S., and Sorkin, A. (2006) Mol. Cell 21, 737-748
27. Kirkpatrick, D. S., Hathaway, N. A., Hanna, J., Elsasser, S., Rush, J., Finley, D., King, R. W., and Gygi, S. P. (2006) Nat. Cell Biol. 8, 700-710
28. Newton, K., Matsumoto, M. L., Wertz, I. E., Kirkpatrick, D. S., Lill, J. R., Tan, J., Dugger, D., Gordon, N., Sidhu, S. S., Fellouse, F. A., Komuves, L., French, D. M., Ferrando, R. E., Lam, C., Compaan, D., Yu, C., Bosanac, I., Hymowitz, S. G., Kelley, R. F., and Dixit, V. M. (2008) Cell 134, 668-678
29. Rappsilber, J., Mann, M., and Ishihama, Y. (2007) Nat. Protocols 2, 1896-1906
30. Maes, K., Missiaen, L., Parys, J. B., De Smet, P., Sienaert, I., Waelkens, E., Callewaert, G., and De Smedt, H. (2001) J. Biol. Chem. 276, 3492-3497
31. Yoshikawa, F., Iwasaki, H., Michikawa, T., Furuichi, T., and Mikoshiba, K. (1999) J. Biol. Chem. 274, 316-327
32. Thrower, J. S., Hoffman, L., Rechsteiner, M., and Pickart, C. M. (2000) EMBO J. 19, 94-102
33. Bosanac, I., Alattia, J. R., Mal, T. K., Chan, J., Talarico, S., Tong, F. K., Tong, K. I., Yoshikawa, F., Furuichi, T., Iwai, M., Michikawa, T., Mikoshiba, K., and Ikura, M. (2002) Nature 420, 696-700
34. Patel, S., Joseph, S. K., and Thomas, A. P. (1999) Cell Calcium 25, 247-264
35. Bhanumathy, C. D., Nakao, S. K., and Joseph, S. K. (2006) J. Biol. Chem. 281, 3722-3730
36. Nielsen, M. L., Vermeulen, M., Bonaldi, T., Cox, J., Moroder, L., and Mann, M. (2008) Nat. Methods 5, 459-460
37. Kirkpatrick, D. S., Haas, W., and Gygi, S. P. (2008) in Protocols for the Bioanalytical Discovery of Post-translational Modifications (Lill, J., Sandoval, W., and Pham, V., eds) pp. 103-137, Transworld Research Network, Kerala, India
38. Husnjak, K., Elsasser, S., Zhang, N., Chen, X., Randles, L., Shi, Y., Hofmann, K., Walters, K., Finley, D., and Dikic, I. (2008) Nature 453, 481-488
39. Schreiner, P., Chen, X., Husnjak, K., Randles, L., Zhang, N., Elsasser, S., Finley, D., Dikic, I., Walter, K., and Groll, M. (2008) Nature 453, 548-552
40. Hofmann, R. M., and Pickart, C. M. (2001) J. Biol. Chem. 276, 27936-27943
41. Kim, H. T., Kim, K. P., Lledias, F., Kisselev, A. F., Scaglione, K. M., Skowyra, D., Gygi, S. P., and Goldberg, A. L. (2007) J. Biol. Chem. 282, 17375-17386
42. Li, W., Tu, D., Brunger, A. T., and Ye, Y. (2007) Nature 446, 333-337
43. Ravid, T., and Hochstrasser, M. (2007) Nat. Cell Biol. 9, 422-427
44. Wertz, I. E., O'Rourke, K. M., Zhou, H., Eby, M., Aravind, L., Seshagiri, S., Wu, P., Wiesmann, C., Baker, R., Boone, D. L., Ma, A., Koonin, E. V., and Dixit, V. M. (2004) Nature 430, 694-699
45. Winborn, B. J., Travis, S. M., Todi, S. V., Scaglione, K. M., Xu, P., Williams, A. J., Cohen, R. E., Peng, J., and Paulson, H. L. (2008) J. Biol. Chem. 283, 26436-26443
46. Kobayashi, T., Tanaka, K., Inoue, K., and Kakizuka, A. (2002) J. Biol. Chem. 277, 47358-47365
47. Alzayady, K. J., and Wojcikiewicz, R. J. H. (2005) Biochem. J. 392, 601-606