Culture-independent assessment of rhizobiales-related alphaproteobacteria and the diversity of Methylobacterium in the rhizosphere and rhizoplane of transgenic eucalyptus

Microbial Ecology

Volumn 57, Issue 1, 2009, Pages 82-93

  Andreote, Fernando Dini ^a   Carneiro, Raphael Tozelli ^a   Salles, Joana Falcão ^b   Marcon, Joelma ^a   Labate, Carlos Alberto ^a   Azevedo, João Lúcio ^a   Araújo, Welington Luiz ^a,c  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIVERSITÉ LYON 1   (France)

^c UNIVERSIDADE DE MOGI DAS CRUZES   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); EUCALYPTUS; METHYLOBACTERIUM; METHYLOBACTERIUM FUJISAWAENSE; METHYLOBACTERIUM ISBILIENSE; METHYLOBACTERIUM NODULANS; METHYLOBACTERIUM RADIOTOLERANS; RHIZOBIALES;

EID: 58149087101     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-008-9405-8     Document Type: Article

References (36)

1. FD Andreote MJM Gullo AOD Lima W Maccheroni JL Azevedo WL Araujo 2004 Impact of genetically modified Enterobacter cloacae on indigenous endophytic community of Citrus sinensis seedlings J Microbiol 42 169 173
2. FD Andreote PT Lacava CS Gai WL Araujo W Maccheroni LS van Overbeek JD van Elsas JL Azevedo 2006 Model plants for studying the interaction between Methylobacterium mesophilicum and Xylella fastidiosa Can J Microbiol 52 419 426
3. FD Andreote R Mendes F Dini-Andreote PB Rossetto CA Labate AA Pizzirani-Kleiner JD van Elsas JL Azevedo WL Araujo 2008 Transgenic tobacco revealing altered bacterial diversity in the rhizosphere during early plant development Antonie Leeuwenhoek 93 415 424
4. WL Araujo W Maccheroni CI Aguilar-Vildoso PAV Barroso HO Saridakis JL Azevedo 2001 Variability and interactions between endophytic bacteria and fungi isolated from leaf tissues of citrus rootstocks Can J Microbiol 47 229 236
5. WL Araujo J Marcon W Maccheroni JD van Elsas JWL van Vuurde JL Azevedo 2002 Diversity of endophytic bacterial populations and their interaction with Xylella fastidiosa in citrus plants Appl Environ Microb 68 4906 4914
6. TJ Battin WT Sloan S Kjelleberg H Daims IM Head TP Curtis L Eberl 2007 Microbial landscapes: new paths to biofilm research Nat Rev Microbiol 5 76 81
7. J Cervantes-Martinez S Lopez-Diaz B Rodriguez-Garay 2004 Detection of the effects of Methylobacterium in Agave tequilana Weber var. azul by laser-induced fluorescence Plant Sci 166 889 892
8. S Chanprame JJ Todd JM Widholm 1996 Prevention of pink-pigmented methylotrophic bacteria (Methylobacterium mesophilicum) contamination of plant tissue cultures Plant Cell Rep 16 222 225
9. KE Dunfield JJ Germida 2004 Impact of genetically modified crops on soil- and plant-associated microbial communities J Environ Qual 33 806 815
10. A Elbeltagy K Nishioka H Suzuki T Sato YI Sato H Morisaki H Mitsui K Minamisawa 2000 Isolation and characterization of endophytic bacteria from wild and traditionally cultivated rice varieties Soil Sci Plant Nutr 46 617 629
11. C Esser N Ahmadinejad C Wiegand C Rotte F Sebastiani G Gelius-Dietrich K Henze E Kretschmann E Richly D Leister D Bryant MA Steel PJ Lockhart D Penny W Martin 2004 A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes Mol Biol Evol 21 1643 1660
12. B Ewing L Hillier MC Wendl P Green 1998 Base-calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res 8 175 185
13. DA Fitzpatrick CJ Creevey JO McInerney 2006 Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales Mol Biol Evol 23 74 85
14. N Garg Geetanjali 2007 Symbiotic nitrogen fixation in legume nodules: process and signaling. A review Agron Sustain Dev 27 59 68
15. ER Gonzalez A de Andrade AL Bertolo GC Lacerda RT Carneiro VAP Defavari MTV Labate CA Labate 2002 Production of transgenic Eucalyptus grandis × E. urophylla using the sonication-assisted Agrobacterium transformation (SAAT) system Funct Plant Biol 29 97 102
16. S Gyamfi U Pfeifer M Stierschneider A Sessitsch 2002 Effects of transgenic glufosinate-tolerant oilseed rape (Brassica napus) and the associated herbicide application on eubacterial and Pseudomonas communities in the rhizosphere FEMS Microbiol Ecol 41 181 190
17. H Heuer K Smalla 1997 Evaluation of community-level catabolic profiling using BIOLOG GN microplates to study microbial community changes in potato phyllosphere J Microbiol Meth 30 49 61
18. H Heuer K Smalla 1999 Bacterial phyllosphere communities of Solanum tuberosum L. and T4-lysozyme-producing transgenic variants FEMS Microbiol Ecol 28 357 371
19. H Heuer M Krsek P Baker K Smalla EMH Wellington 1997 Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients Appl Environ Microb 63 3233 3241
20. MTV Labate K Ko ZW Ko L Pinto M Real MR Romano PR Barja A Granell G Friso KJ van Wijk E Brugnoli CA Labate 2004 Constitutive expression of pea Lhcb1-2 in tobacco affects plant development, morphology and photosynthetic capacity Plant Mol Biol 55 701 714
21. DJ Lane B Pace GJ Olsen DA Stahl ML Sogin NR Pace 1985 Rapid-determination of 16S ribosomal RNA sequences for phylogenetic analyses Proc Natl Acad Sci U S A 82 6955 6959
22. J Lottmann H Heuer K Smalla G Berg 1999 Influence of transgenic T4-lysozyme-producing potato plants on potentially beneficial plant-associated bacteria FEMS Microbiol Ecol 29 365 377
23. M Madhaiyan S Poonguzhali M Senthilkumar S Seshadri HY Chung JC Yang S Sundaram TM Sa 2004 Growth promotion and induction of systemic resistance in rice cultivar Co-47 (Oryza sativa L.) by Methylobacterium spp Bot Bull Acad Sinica 45 315 324
24. M Madhaiyan BVS Reddy R Anandham M Senthilkumar S Poonguzhali SP Sundaram TM Sa 2006 Plant growth-promoting Methylobacterium induces defense responses in groundnut (Arachis hypogaea L.) compared with rot pathogens Curr Microbiol 53 270 276
25. IJ Misaghi CR Donndelinger 1990 Endophytic bacteria in symptom-free cotton plants Phytopathology 80 808 811
26. G Muyzer EC Dewaal AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S ribosomal RNA Appl Environ Microb 59 695 700
27. T Nishio T Yoshikura H Itoh 1997 Detection of Methylobacterium species by 16S rRNA gene-targeted PCR Appl Environ Microb 63 1594 1597
28. ZS Omer R Tombolini B Gerhardson 2004 Plant colonization by pink-pigmented facultative methylotrophic bacteria (PPFMs) FEMS Microbiol Ecol 47 319 326
29. AM Pirttila H Laukkanen H Pospiech R Myllyla A Hohtola 2000 Detection of intracellular bacteria in the buds of Scotch fine (Pinus sylvestris L.) by in situ hybridization Appl Environ Microb 66 3073 3077
30. F Rasche V Hodl C Poll E Kandeler MH Gerzabek JD van Elsas A Sessitsch 2006 Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure FEMS Microbiol Ecol 56 219 235
31. SD Siciliano JJ Germida 1999 Taxonomic diversity of bacteria associated with the roots of field-grown transgenic Brassica napus cv. Quest, compared to the non-transgenic B. napus cv. Excel and B. rapa cv. Parkland FEMS Microbiol Ecol 29 263 272
32. A Sy E Giraud P Jourand N Garcia A Willems P de Lajudie Y Prin M Neyra M Gillis C Boivin-Masson B Dreyfus 2001 Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes J Bacteriol 183 214 220
33. A Sy E Giraud R Samba P de Lajudie M Gillis B Dreyfus 2001 Certain legumes of the genus Crotalaria are specifically nodulated by a new species of Methylobacterium Can J Microbiol 47 503 508
34. K Tamura J Dudley M Nei S Kumar 2007 MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
35. KP Williams BW Sobral AW Dickerman 2007 A robust species tree for the Alphaproteobacteria J Bacteriol 189 4578 4586
36. M Wu LV Sun J Vamathevan M Riegler R Deboy JC Brownlie EA McGraw W Martin C Esser N Ahmadinejad C Wiegand R Madupu MJ Beanan LM Brinkac SC Daugherty AS Durkin JF Kolonay WC Nelson Y Mohamoud P Lee K Berry MB Young T Utterback J Weidman WC Nierman IT Paulsen KE Nelson H Tettelin SL O'Neill JA Eisen 2004 Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements PLOS Biol 2 327 341