-
1
-
-
0034923502
-
DNA topoisomerases: Structure, function, and mechanism
-
Champoux,J.J. (2001) DNA topoisomerases: Structure, function, and mechanism. Annu. Rev. Biochem., 70, 369-413.
-
(2001)
Annu. Rev. Biochem
, vol.70
, pp. 369-413
-
-
Champoux, J.J.1
-
2
-
-
0036085460
-
Cellular roles of DNA topoisomerases: A molecular perspective
-
Wang,J.C. (2002) Cellular roles of DNA topoisomerases: A molecular perspective, Nat. Rev. Mol. Cell Biol., 3, 430-440.
-
(2002)
Nat. Rev. Mol. Cell Biol
, vol.3
, pp. 430-440
-
-
Wang, J.C.1
-
3
-
-
34247496263
-
Origin and evolution of DNA topoisomerases
-
Forterre,P., Gribaldo,S., Gadelle,D. and Serre,M.C. (2007) Origin and evolution of DNA topoisomerases. Biochimie. 89, 427-446.
-
(2007)
Biochimie
, vol.89
, pp. 427-446
-
-
Forterre, P.1
Gribaldo, S.2
Gadelle, D.3
Serre, M.C.4
-
4
-
-
2442599792
-
Structure, molecular mechanisms and evolutionary relationships in DNA topoisomerases
-
Corbett,K.D. and Berger,J.M. (2004) Structure, molecular mechanisms and evolutionary relationships in DNA topoisomerases. Annu. Rev. Biophys. Biomol. Struct., 33, 95-118.
-
(2004)
Annu. Rev. Biophys. Biomol. Struct
, vol.33
, pp. 95-118
-
-
Corbett, K.D.1
Berger, J.M.2
-
5
-
-
0024316466
-
DNA topoisomerase poisons as antitumor drugs
-
Liu,L.F. (1989) DNA topoisomerase poisons as antitumor drugs. Annu. Rev. Biochem., 58, 351-375.
-
(1989)
Annu. Rev. Biochem
, vol.58
, pp. 351-375
-
-
Liu, L.F.1
-
6
-
-
33749034730
-
Topoisomerase I inhibitors: Camptothecins and beyond
-
Pommier,Y. (2006) Topoisomerase I inhibitors: Camptothecins and beyond. Nat. Rev. Cancer, 6, 789-802.
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 789-802
-
-
Pommier, Y.1
-
7
-
-
0036781733
-
DNA topoisomerases in cancer chemotherapy: Using enzymes to generate selective DNA damage
-
Nitiss,J.L. (2002) DNA topoisomerases in cancer chemotherapy: Using enzymes to generate selective DNA damage. Curr. Opin. Investig Drugs 3, 1512-1516.
-
(2002)
Curr. Opin. Investig Drugs
, vol.3
, pp. 1512-1516
-
-
Nitiss, J.L.1
-
8
-
-
0038121041
-
Fluoroquinolones: Action and resistance
-
Drlica,K. and Malik,M. (2003) Fluoroquinolones: Action and resistance. Curr. Top. Med. Chem., 3, 249-282.
-
(2003)
Curr. Top. Med. Chem
, vol.3
, pp. 249-282
-
-
Drlica, K.1
Malik, M.2
-
10
-
-
33847719510
-
From magic bullets back to the magic mountain: The rise of extensively drug-resistant tuberculosis
-
Dorman,S.E. and Chaisson,R.E. (2007) From magic bullets back to the magic mountain: The rise of extensively drug-resistant tuberculosis. Nat. Med., 13, 295-298.
-
(2007)
Nat. Med
, vol.13
, pp. 295-298
-
-
Dorman, S.E.1
Chaisson, R.E.2
-
11
-
-
31344459549
-
Antimicrobial-resistant bacteria in the community setting
-
Furuya,E.Y. and Lowy,F.D. (2006) Antimicrobial-resistant bacteria in the community setting. Nat. Rev. Microbiol., 4, 36-45.
-
(2006)
Nat. Rev. Microbiol
, vol.4
, pp. 36-45
-
-
Furuya, E.Y.1
Lowy, F.D.2
-
12
-
-
33947701471
-
Exploring DNA lopoisomerases as targets of novel therapeutic agents in the treatment of infectious diseases
-
Tse-Dinh,Y.C. (2007) Exploring DNA lopoisomerases as targets of novel therapeutic agents in the treatment of infectious diseases. Infect. Disord. Drug Targets, 7, 3-9.
-
(2007)
Infect. Disord. Drug Targets
, vol.7
, pp. 3-9
-
-
Tse-Dinh, Y.C.1
-
13
-
-
34250015066
-
Compounds with antibacterial activity that enhance DNA cleavage by bacterial DNA topoisomrnerase I
-
Cheng,B., Liu,I. and Tse-Dinh,Y.C. (2007) Compounds with antibacterial activity that enhance DNA cleavage by bacterial DNA topoisomrnerase I. J. Antimicrob. Chemother., 59, 640-645.
-
(2007)
J. Antimicrob. Chemother
, vol.59
, pp. 640-645
-
-
Cheng, B.1
Liu, I.2
Tse-Dinh, Y.C.3
-
14
-
-
0032530488
-
Toprim - a conserved catalytic domain in type IA and II topoisomerases, DnaG- type primases, OLD family nucleases and RecR proteins
-
Aravind,L., Leipe,D.D. and Koonin,E.V. (1998) Toprim - a conserved catalytic domain in type IA and II topoisomerases, DnaG- type primases, OLD family nucleases and RecR proteins. Nucleic Acids Res., 26 4205-4213.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4205-4213
-
-
Aravind, L.1
Leipe, D.D.2
Koonin, E.V.3
-
15
-
-
0022971385
-
Uncoupling of the DNA breaking and rejoining steps of escherichia coli type I DNA topoisomerase. Demonstration of an active covalent protein-DNA complex
-
Tse-Dinh,Y.C. (1986) Uncoupling of the DNA breaking and rejoining steps of escherichia coli type I DNA topoisomerase. Demonstration of an active covalent protein-DNA complex. J. Biol. Chem., 261, 10931-10935.
-
(1986)
J. Biol. Chem
, vol.261
, pp. 10931-10935
-
-
Tse-Dinh, Y.C.1
-
16
-
-
0017844753
-
Interaction between DNA and escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein
-
Depew,R.E., Liu,L.F. and Wang,J.C. (1978) Interaction between DNA and escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein. J. Biol. Chem., 253, 511-518.
-
(1978)
J. Biol. Chem
, vol.253
, pp. 511-518
-
-
Depew, R.E.1
Liu, L.F.2
Wang, J.C.3
-
17
-
-
33644681603
-
Bacterial cell killing mediated by topoisomerase I DNA cleavage activity
-
Cheng,B., Shukla,S., Vasunilashorn,S.. Mukhopadhyay,S. and Tse-Dinh,Y.C. (2005) Bacterial cell killing mediated by topoisomerase I DNA cleavage activity. J. Biol. Chem., 280, 39489-38495.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 39489-38495
-
-
Cheng, B.1
Shukla, S.2
Vasunilashorn, S.3
Mukhopadhyay, S.4
Tse-Dinh, Y.C.5
-
18
-
-
39449084697
-
Mutation adjacent to the active site tyrosine can enhance DNA cleavage and cell killing by the TOPRIM gly to ser mutant of bacterial topoisomerase I
-
Cheng,B., Sorokin,E.P. and Tse-Dinh,Y.C. (2008) Mutation adjacent to the active site tyrosine can enhance DNA cleavage and cell killing by the TOPRIM gly to ser mutant of bacterial topoisomerase I. Nucleic Acids Res., 36, 1017-1025.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 1017-1025
-
-
Cheng, B.1
Sorokin, E.P.2
Tse-Dinh, Y.C.3
-
19
-
-
0025830670
-
SOS induction as an in vivo assay of enzyme-DNA interactions
-
Heitman,J. and Model,P. (1991) SOS induction as an in vivo assay of enzyme-DNA interactions. Gene, 103, 1-9.
-
(1991)
Gene
, vol.103
, pp. 1-9
-
-
Heitman, J.1
Model, P.2
-
20
-
-
0026641630
-
Conditional growth of escherichia coli caused by expression of vaccinia virus DNA topoisomerase I
-
Fernandez-Beros,M.E. and Tse-Dinh,Y.C. (1992) Conditional growth of escherichia coli caused by expression of vaccinia virus DNA topoisomerase I. J. Bacteriol., 174, 7059-7062.
-
(1992)
J. Bacteriol
, vol.174
, pp. 7059-7062
-
-
Fernandez-Beros, M.E.1
Tse-Dinh, Y.C.2
-
21
-
-
33644800903
-
High-throughput cloning for proteomics research
-
Doyle,S.A. (2005) High-throughput cloning for proteomics research. Methods Mol. Biol., 310, 107-113.
-
(2005)
Methods Mol. Biol
, vol.310
, pp. 107-113
-
-
Doyle, S.A.1
-
22
-
-
27644594271
-
Crosstalk between primase subunits can act to regulate primer synthesis in trans
-
Corn,J.E., Pease,P.J., Hura,G.L. and Berger,J.M. (2005) Crosstalk between primase subunits can act to regulate primer synthesis in trans. Mol. Cell, 20, 391-401.
-
(2005)
Mol. Cell
, vol.20
, pp. 391-401
-
-
Corn, J.E.1
Pease, P.J.2
Hura, G.L.3
Berger, J.M.4
-
23
-
-
3342973624
-
Overexpression and purification of bacterial DNA topoisomerase I
-
Zhu,C.X. and Tse-Dinh,Y.C. (1999) Overexpression and purification of bacterial DNA topoisomerase I. Methods Mol. Biol., 94, 145-151.
-
(1999)
Methods Mol. Biol
, vol.94
, pp. 145-151
-
-
Zhu, C.X.1
Tse-Dinh, Y.C.2
-
24
-
-
33645826239
-
Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by escherichia coli DNA topoisomerase I
-
Strahs,D., Zhu,C.X., Cheng,B., Chen,J. and Tse-Dinh,Y.C. (2006) Experimental and computational investigations of Ser10 and Lys13 in the binding and cleavage of DNA substrates by escherichia coli DNA topoisomerase I. Nucleic Acids Res., 34, 1785-1797.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1785-1797
-
-
Strahs, D.1
Zhu, C.X.2
Cheng, B.3
Chen, J.4
Tse-Dinh, Y.C.5
-
25
-
-
4544384634
-
Site-directed mutagenesis of residues involved in G strand DNA binding by escherichia coli DNA topoisomerase I
-
Cheng,B., Feng,J., Mulay,V., Gadgil,S. and Tse-Dinh,Y.C. (2004) Site-directed mutagenesis of residues involved in G strand DNA binding by escherichia coli DNA topoisomerase I. J. Biol. Chem., 279 39207-39213.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 39207-39213
-
-
Cheng, B.1
Feng, J.2
Mulay, V.3
Gadgil, S.4
Tse-Dinh, Y.C.5
-
26
-
-
0031473847
-
SWISS-MODEL and the swiss-PdbViewer: An environment for comparative protein modeling
-
Guex,N. and Peitsch,M.C. (1997) SWISS-MODEL and the swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis, 18, 2714-2723.
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
27
-
-
0037066771
-
Biochemical characterization of an invariant histidine involved in escherichia coli DNA topoisomerase I catalysis
-
Perry,K. and Mondragon,A. (2002) Biochemical characterization of an invariant histidine involved in escherichia coli DNA topoisomerase I catalysis. J. Biol. Chem., 277, 13237-13245.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 13237-13245
-
-
Perry, K.1
Mondragon, A.2
-
28
-
-
0034008773
-
The acidic triad conserved in type IA DNA topoisomerases is required for binding of mg(II) and subsequent conformational change
-
Zhu,C.X. and Tse-Dinh,Y.C. (2000) The acidic triad conserved in type IA DNA topoisomerases is required for binding of mg(II) and subsequent conformational change. J. Biol. Chem., 275, 5318-5322.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 5318-5322
-
-
Zhu, C.X.1
Tse-Dinh, Y.C.2
-
29
-
-
0343052266
-
Compendium of DNA topoisomerase sequences
-
Caron,P.R. (1999) Compendium of DNA topoisomerase sequences. Methods Mol. Biol., 94, 279-316.
-
(1999)
Methods Mol. Biol
, vol.94
, pp. 279-316
-
-
Caron, P.R.1
-
30
-
-
42549102784
-
SOS induction by stabilized topoisomerase IA cleavage complex occurs via the RecBCD pathway
-
Sutherland,J.H., Cheng,B., Liu,I.F. and Tse-Dinh,Y.C. (2008) SOS induction by stabilized topoisomerase IA cleavage complex occurs via the RecBCD pathway. J. Bacteriol., 190, 3399-3403.
-
(2008)
J. Bacteriol
, vol.190
, pp. 3399-3403
-
-
Sutherland, J.H.1
Cheng, B.2
Liu, I.F.3
Tse-Dinh, Y.C.4
-
31
-
-
33645864066
-
Retroviral DNA integration - mechanism and consequences
-
Lewinski,M.K. and Bushman,F.D. (2005) Retroviral DNA integration - mechanism and consequences. Adv. Genet., 55, 147-181.
-
(2005)
Adv. Genet
, vol.55
, pp. 147-181
-
-
Lewinski, M.K.1
Bushman, F.D.2
-
32
-
-
14944374558
-
Integrase inbibitors to treat HIV/AIDS
-
Pommier,Y., Johnson,A.A. and Marchand,C. (2005) Integrase inbibitors to treat HIV/AIDS. Nature Rev. Drug Dis., 5, 236-248.
-
(2005)
Nature Rev. Drug Dis
, vol.5
, pp. 236-248
-
-
Pommier, Y.1
Johnson, A.A.2
Marchand, C.3
-
33
-
-
0032567350
-
Structural determinants of metal-induced conformational changes in HIV-1 integrase
-
Asante-Appiah,E., Seeholzer,S.H. and Skalka,A.M. (1998) Structural determinants of metal-induced conformational changes in HIV-1 integrase. J. Biol. Chem., 273, 35078-35087.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 35078-35087
-
-
Asante-Appiah, E.1
Seeholzer, S.H.2
Skalka, A.M.3
-
34
-
-
0031434606
-
Molecular mechanisms in retrovirus DNA integration
-
Asante-Appiah,E. and Skalka,A.M. (1997) Molecular mechanisms in retrovirus DNA integration. Antiviral Res., 36, 139-156.
-
(1997)
Antiviral Res
, vol.36
, pp. 139-156
-
-
Asante-Appiah, E.1
Skalka, A.M.2
-
35
-
-
33750532296
-
A platform for designing HIV integrase inhibitors. Part 2: A two-metal binding model as a potential mechanism of HIV integrase inhibitors
-
Kawasuji,T., Fuji,M., Yoshinaga,T., Sato,A., Fujiwara,T. and Kiyama,R. (2006) A platform for designing HIV integrase inhibitors. Part 2: A two-metal binding model as a potential mechanism of HIV integrase inhibitors. Bioorg. Med. Chem., 14, 8420-8429.
-
(2006)
Bioorg. Med. Chem
, vol.14
, pp. 8420-8429
-
-
Kawasuji, T.1
Fuji, M.2
Yoshinaga, T.3
Sato, A.4
Fujiwara, T.5
Kiyama, R.6
-
36
-
-
2342561153
-
Rational design and synthesis of novel dimeric diketoacid-containing inhibitors of HIV-1 integrase: Implication for binding to two metal ions on the active site of integrase
-
Long,Y.Q., Jiang,X.H., Dayam,R., Sanchez,T., Shoemaker,R., Sei,S. and Neamati,N. (2004) Rational design and synthesis of novel dimeric diketoacid-containing inhibitors of HIV-1 integrase: Implication for binding to two metal ions on the active site of integrase. J. Med. Chem., 47, 2561-2573.
-
(2004)
J. Med. Chem
, vol.47
, pp. 2561-2573
-
-
Long, Y.Q.1
Jiang, X.H.2
Dayam, R.3
Sanchez, T.4
Shoemaker, R.5
Sei, S.6
Neamati, N.7
-
37
-
-
33645104685
-
Preferential inhibition of the magnesium-dependent strand transfer reaction of HIV-1 integrase by alpha-hydroxytropolones
-
Semenova,E.A., Johnson,A.A., Marchand,C., Davis,D.A., Yarchoan,R. and Pommier,Y. (2006) Preferential inhibition of the magnesium-dependent strand transfer reaction of HIV-1 integrase by alpha-hydroxytropolones. Mol. Pharmacol., 69, 1454-1460.
-
(2006)
Mol. Pharmacol
, vol.69
, pp. 1454-1460
-
-
Semenova, E.A.1
Johnson, A.A.2
Marchand, C.3
Davis, D.A.4
Yarchoan, R.5
Pommier, Y.6
-
38
-
-
38549089484
-
Raltegravir (MK-0518): An integrase inhibitor for the treatment of HIV-1
-
Evering,T.H. and Markowitz,M. (2007) Raltegravir (MK-0518): An integrase inhibitor for the treatment of HIV-1. Drugs Today, 43, 865-877.
-
(2007)
Drugs Today
, vol.43
, pp. 865-877
-
-
Evering, T.H.1
Markowitz, M.2
|