-
1
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi A-L, Albert R (1999) Emergence of scaling in random networks. Science 286:509-512.
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.-L.1
Albert, R.2
-
2
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts DJ, Strogatz SH (1998) Collective dynamics of 'small-world' networks. Nature 393:440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
3
-
-
0037174670
-
Network motifs: Simple building blocks of complex networks
-
Milo R, et al. (2002) Network motifs: Simple building blocks of complex networks. Science 298:824-827.
-
(2002)
Science
, vol.298
, pp. 824-827
-
-
Milo, R.1
-
4
-
-
0036578795
-
Network motifs in the transcriptional regulation network of Escherichia coli
-
Shen-Orr SS, Milo R, Mangan S, Alon U (2002) Network motifs in the transcriptional regulation network of Escherichia coli. Nat Genet 31:64-68.
-
(2002)
Nat Genet
, vol.31
, pp. 64-68
-
-
Shen-Orr, S.S.1
Milo, R.2
Mangan, S.3
Alon, U.4
-
5
-
-
4444268694
-
Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs
-
Kashtan N, Itzkovitz S, Milo R, Alon U (2004) Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs. Bioinformatics 20:1746-1758.
-
(2004)
Bioinformatics
, vol.20
, pp. 1746-1758
-
-
Kashtan, N.1
Itzkovitz, S.2
Milo, R.3
Alon, U.4
-
6
-
-
33646191268
-
A faster algorithm for detecting network motifs
-
Wernicke S (2005) A faster algorithm for detecting network motifs. Lecture Notes in Bioinformatics 3692:165-177.
-
(2005)
Lecture Notes in Bioinformatics
, vol.3692
, pp. 165-177
-
-
Wernicke, S.1
-
8
-
-
0000445027
-
Finding and counting given length cycles
-
Alon N, Yuster R, Zwick U (1997) Finding and counting given length cycles. Algorithmica 17:209-223.
-
(1997)
Algorithmica
, vol.17
, pp. 209-223
-
-
Alon, N.1
Yuster, R.2
Zwick, U.3
-
9
-
-
0242430943
-
Efficient parallel algorithms for computing all pair shortest paths in directed graphs
-
Han Y (1997) Efficient parallel algorithms for computing all pair shortest paths in directed graphs. Algorithmica 17:399-415.
-
(1997)
Algorithmica
, vol.17
, pp. 399-415
-
-
Han, Y.1
-
10
-
-
23644437498
-
Formation of regulatory patterns during signal propagation in a mammalian cellular network
-
Ma'ayan A, et al. (2005) Formation of regulatory patterns during signal propagation in a mammalian cellular network. Science 309:1078-1083.
-
(2005)
Science
, vol.309
, pp. 1078-1083
-
-
Ma'ayan, A.1
-
11
-
-
27144445049
-
Early Experience with Scientific Applications on the Blue Gene/L Supercomputer
-
Springer, Berlin
-
Almasi G, et al. (2005) Early Experience with Scientific Applications on the Blue Gene/L Supercomputer, Lecture Notes in Computer Science (Springer, Berlin), Vol 3648, pp 560-570.
-
(2005)
Lecture Notes in Computer Science
, vol.3648
, pp. 560-570
-
-
Almasi, G.1
-
12
-
-
33745242506
-
Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks
-
Balaji S, Iyer LM, Aravind L, Babu MM (2006) Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks. J Mol Biol 360:204-212.
-
(2006)
J Mol Biol
, vol.360
, pp. 204-212
-
-
Balaji, S.1
Iyer, L.M.2
Aravind, L.3
Babu, M.M.4
-
13
-
-
33644873438
-
-
Salgado H, et al, 2006) RegulonDB version 5.0, Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res 34:D394-397
-
Salgado H, et al. (2006) RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. Nucleic Acids Res 34:D394-397.
-
-
-
-
15
-
-
0026043845
-
The posterior nervous system of the nematode Caenorhabditis elegans: Serial reconstruction of identified neurons and complete pattern of synaptic interactions
-
Hall D, Russell R (1991) The posterior nervous system of the nematode Caenorhabditis elegans: Serial reconstruction of identified neurons and complete pattern of synaptic interactions. J Neurosci 11:1-22.
-
(1991)
J Neurosci
, vol.11
, pp. 1-22
-
-
Hall, D.1
Russell, R.2
-
16
-
-
0026277992
-
Artifacts or attributes? Effects of resolution on the Little Rock Lake food web
-
Martinez ND (1991) Artifacts or attributes? Effects of resolution on the Little Rock Lake food web. Ecol Monogr 61:367-392.
-
(1991)
Ecol Monogr
, vol.61
, pp. 367-392
-
-
Martinez, N.D.1
-
17
-
-
18144406182
-
Scale-free brain functional networks
-
Eguiluz VM, Chialvo DR, Cecchi GA, Baliki M, Apkarian AV (2005) Scale-free brain functional networks. Phys Rev Lett 94:018102.
-
(2005)
Phys Rev Lett
, vol.94
, pp. 018102
-
-
Eguiluz, V.M.1
Chialvo, D.R.2
Cecchi, G.A.3
Baliki, M.4
Apkarian, A.V.5
-
18
-
-
34548855994
-
Identifying directed links in large scale functional networks: Application to brain fMRI
-
Cecchi GA, Centeno MV, Baliki M, Apkarian AV, Chialvo DR (2007) Identifying directed links in large scale functional networks: Application to brain fMRI. BMC Cell Biology 8:S5.
-
(2007)
BMC Cell Biology
, vol.8
-
-
Cecchi, G.A.1
Centeno, M.V.2
Baliki, M.3
Apkarian, A.V.4
Chialvo, D.R.5
-
19
-
-
33745302228
-
Topology of resultant networks shaped by evolutionary pressure
-
Ma'ayan A, Lipshtat A, Iyengar R (2006) Topology of resultant networks shaped by evolutionary pressure. Phys Rev E 73:061912.
-
(2006)
Phys Rev E
, vol.73
, pp. 061912
-
-
Ma'ayan, A.1
Lipshtat, A.2
Iyengar, R.3
-
20
-
-
0024913805
-
Combinational profiles of sequential benchmark circuits
-
Brglez F, Bryan D, Kozminski K (1989) Combinational profiles of sequential benchmark circuits. Circuits Systems 3:1929-1934.
-
(1989)
Circuits Systems
, vol.3
, pp. 1929-1934
-
-
Brglez, F.1
Bryan, D.2
Kozminski, K.3
-
21
-
-
41849134194
-
On the possibility of first-order phase transitions in Ising systems of triplet ions with zero-field splitting
-
Capel HW (1966) On the possibility of first-order phase transitions in Ising systems of triplet ions with zero-field splitting. Physica 32:966-988.
-
(1966)
Physica
, vol.32
, pp. 966-988
-
-
Capel, H.W.1
-
22
-
-
0037012880
-
Specificity and stability in topology of protein networks
-
Maslov S, Sneppen K (2002) Specificity and stability in topology of protein networks. Science 296:910-913.
-
(2002)
Science
, vol.296
, pp. 910-913
-
-
Maslov, S.1
Sneppen, K.2
-
23
-
-
33646153295
-
FANMOD: A tool for fast network motif detection
-
Wernicke S, Rasche F (2006) FANMOD: A tool for fast network motif detection. Bioinformatics 22:1152-1153.
-
(2006)
Bioinformatics
, vol.22
, pp. 1152-1153
-
-
Wernicke, S.1
Rasche, F.2
-
24
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla US, Iyengar R (1999) Emergent properties of networks of biological signaling pathways. Science 283:381-387.
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
25
-
-
27144517984
-
Interlinked fast and slow positive feedback loops drive reliable cell decisions
-
Brandman O, Ferrell JE, Jr, Li R, Meyer T (2005) Interlinked fast and slow positive feedback loops drive reliable cell decisions. Science 310:496-498.
-
(2005)
Science
, vol.310
, pp. 496-498
-
-
Brandman, O.1
Ferrell Jr, J.E.2
Li, R.3
Meyer, T.4
-
26
-
-
27244451471
-
p53-Mdm2 loop controlled by a balance of its feedback strength and effective dampening using ATM and delayed feedback
-
Wagner J, et al. (2005) p53-Mdm2 loop controlled by a balance of its feedback strength and effective dampening using ATM and delayed feedback. Syst Biol (Stevenage) 152:109-118.
-
(2005)
Syst Biol (Stevenage)
, vol.152
, pp. 109-118
-
-
Wagner, J.1
-
27
-
-
0842285841
-
Summing up the noise in gene networks
-
Paulsson J (2004) Summing up the noise in gene networks. Nature 427:415-418.
-
(2004)
Nature
, vol.427
, pp. 415-418
-
-
Paulsson, J.1
-
28
-
-
84966228827
-
Gershgorin theory for the generalized eigenvalue problem Ax = s Bx
-
Stewart GW (1975) Gershgorin theory for the generalized eigenvalue problem Ax = s Bx. Math Comput 29:600-606.
-
(1975)
Math Comput
, vol.29
, pp. 600-606
-
-
Stewart, G.W.1
-
29
-
-
0032518530
-
Constraints on cortical and thalamic projections:Theno-strong-loops hypothesis
-
Crick F, Koch C (1998) Constraints on cortical and thalamic projections:Theno-strong-loops hypothesis. Nature 391:245-250.
-
(1998)
Nature
, vol.391
, pp. 245-250
-
-
Crick, F.1
Koch, C.2
-
30
-
-
0035848872
-
Moving rhythms
-
Marder E (2001) Moving rhythms. Nature 410:755.
-
(2001)
Nature
, vol.410
, pp. 755
-
-
Marder, E.1
-
31
-
-
4644326931
-
Genomic analysis of regulatory network dynamics reveals large topological changes
-
Luscombe NM, et al. (2004) Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 431:308-312.
-
(2004)
Nature
, vol.431
, pp. 308-312
-
-
Luscombe, N.M.1
-
32
-
-
47949113974
-
Stability and time-delay modeling of negative feedback loops
-
Wagner J, Stolovitzky G (2008) Stability and time-delay modeling of negative feedback loops. Proc IEEE 96:1398-1410.
-
(2008)
Proc IEEE
, vol.96
, pp. 1398-1410
-
-
Wagner, J.1
Stolovitzky, G.2
|