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Volumn 448, Issue , 2008, Pages 267-284

Chapter 14 Methods to Determine mRNA Half-Life in Saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL RNA; GALACTOSE; MESSENGER RNA; RIBONUCLEASE H; RNA POLYMERASE II; THIOLUTIN; 2 PYRROLIDONE DERIVATIVE;

EID: 57749207970     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(08)02614-1     Document Type: Review
Times cited : (27)

References (28)
  • 1
    • 0000577868 scopus 로고    scopus 로고
    • The 3′ to 5′-degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′-exonucleases of the exosome complex
    • Anderson J.S., and Parker R.P. The 3′ to 5′-degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3′ to 5′-exonucleases of the exosome complex. EMBO J. 17 (1998) 1497-1506
    • (1998) EMBO J. , vol.17 , pp. 1497-1506
    • Anderson, J.S.1    Parker, R.P.2
  • 2
    • 2342456308 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay: Terminating erroneous gene expression
    • Baker K.E., and Parker R. Nonsense-mediated mRNA decay: Terminating erroneous gene expression. Curr. Opin. Cell Biol. 16 (2004) 293-299
    • (2004) Curr. Opin. Cell Biol. , vol.16 , pp. 293-299
    • Baker, K.E.1    Parker, R.2
  • 4
    • 0034839596 scopus 로고    scopus 로고
    • Computational modeling of eukaryotic mRNA turnover
    • Cao D., and Parker R. Computational modeling of eukaryotic mRNA turnover. RNA 7 (2001) 1192-1212
    • (2001) RNA , vol.7 , pp. 1192-1212
    • Cao, D.1    Parker, R.2
  • 5
    • 0020078214 scopus 로고
    • Two differentially regulated mRNAs with different 5′-ends encode secreted with intracellular forms of yeast invertase
    • Carlson M., and Botstein D. Two differentially regulated mRNAs with different 5′-ends encode secreted with intracellular forms of yeast invertase. Cell 28 (1982) 145-154
    • (1982) Cell , vol.28 , pp. 145-154
    • Carlson, M.1    Botstein, D.2
  • 6
  • 7
    • 25144482816 scopus 로고    scopus 로고
    • General translational repression by activators of mRNA decapping
    • Coller J., and Parker R. General translational repression by activators of mRNA decapping. Cell 122 (2005) 875-886
    • (2005) Cell , vol.122 , pp. 875-886
    • Coller, J.1    Parker, R.2
  • 8
    • 0027320701 scopus 로고
    • A turnover pathway for both stable and unstable mRNAs in yeast: Evidence for a requirement for deadenylation
    • Decker C.J., and Parker R. A turnover pathway for both stable and unstable mRNAs in yeast: Evidence for a requirement for deadenylation. Genes Dev. 7 (1993) 1632-1643
    • (1993) Genes Dev. , vol.7 , pp. 1632-1643
    • Decker, C.J.1    Parker, R.2
  • 9
    • 0030798070 scopus 로고    scopus 로고
    • A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae
    • Gari E., Piedrafita L., Aldea M., and Herrero E. A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae. Yeast 13 (1997) 837-848
    • (1997) Yeast , vol.13 , pp. 837-848
    • Gari, E.1    Piedrafita, L.2    Aldea, M.3    Herrero, E.4
  • 10
    • 0028948708 scopus 로고
    • Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen
    • He F., and Jacobson A. Identification of a novel component of the nonsense-mediated mRNA decay pathway by use of an interacting protein screen. Genes Dev. 9 (1995) 437-454
    • (1995) Genes Dev. , vol.9 , pp. 437-454
    • He, F.1    Jacobson, A.2
  • 11
    • 0025267840 scopus 로고
    • Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae
    • Herrick D., Parker R., and Jacobson A. Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae. Mol. Cell. Biol. 10 (1990) 2269-2284
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 2269-2284
    • Herrick, D.1    Parker, R.2    Jacobson, A.3
  • 12
    • 0028465462 scopus 로고
    • Oat phytochrome A mRNA degradation appears to occur via two distinct pathways
    • Higgs D.C., and Colbert J.T. Oat phytochrome A mRNA degradation appears to occur via two distinct pathways. Plant Cell 6 (1994) 1007-1019
    • (1994) Plant Cell , vol.6 , pp. 1007-1019
    • Higgs, D.C.1    Colbert, J.T.2
  • 13
    • 33749244908 scopus 로고    scopus 로고
    • Translation-independent inhibition of mRNA deadenylation during stress in Saccharomyces cerevisiae
    • Hilgers V., Teixeira D., and Parker R. Translation-independent inhibition of mRNA deadenylation during stress in Saccharomyces cerevisiae. RNA 12 (2006) 1835-1845
    • (2006) RNA , vol.12 , pp. 1835-1845
    • Hilgers, V.1    Teixeira, D.2    Parker, R.3
  • 14
    • 0346786528 scopus 로고    scopus 로고
    • Cytoplasmic degradation of splice-defective pre-mRNAs and intermediates
    • Hilleren P.J., and Parker R. Cytoplasmic degradation of splice-defective pre-mRNAs and intermediates. Mol. Cell 12 (2003) 1453-1465
    • (2003) Mol. Cell , vol.12 , pp. 1453-1465
    • Hilleren, P.J.1    Parker, R.2
  • 15
    • 0027214097 scopus 로고
    • Yeast cells lacking 5′→3′-exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′-cap structure
    • Hsu C.L., and Stevens A. Yeast cells lacking 5′→3′-exoribonuclease 1 contain mRNA species that are poly(A) deficient and partially lack the 5′-cap structure. Mol. Cell Biol. 13 (1993) 4826-4835
    • (1993) Mol. Cell Biol. , vol.13 , pp. 4826-4835
    • Hsu, C.L.1    Stevens, A.2
  • 16
    • 2042528599 scopus 로고
    • Isolation of the yeast regulatory gene GAL4 and analysis of its dosage effects on the galactose/melibiose regulon
    • Johnston S.A., and Hopper J.E. Isolation of the yeast regulatory gene GAL4 and analysis of its dosage effects on the galactose/melibiose regulon. Proc. Natl. Acad. Sci. USA 79 (1982) 6971-6975
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 6971-6975
    • Johnston, S.A.1    Hopper, J.E.2
  • 17
    • 0029058555 scopus 로고
    • Transcriptional regulation in the yeast GAL gene family: A complex genetic network
    • Lohr D., Venkov P., and Zlatanova J. Transcriptional regulation in the yeast GAL gene family: A complex genetic network. FASEB J. 9 (1995) 777-787
    • (1995) FASEB J. , vol.9 , pp. 777-787
    • Lohr, D.1    Venkov, P.2    Zlatanova, J.3
  • 18
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine M.S., McKenzie III A., Demarini D.J., Shah N.G., Wach A., Brachat A., Philippsen P., and Pringle J.R. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14 (1998) 953-961
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie III, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachat, A.6    Philippsen, P.7    Pringle, J.R.8
  • 19
    • 0028202495 scopus 로고
    • Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript
    • Muhlrad D., Decker C.J., and Parker R. Deadenylation of the unstable mRNA encoded by the yeast MFA2 gene leads to decapping followed by 5′→3′ digestion of the transcript. Genes Dev. 8 (1994) 855-866
    • (1994) Genes Dev. , vol.8 , pp. 855-866
    • Muhlrad, D.1    Decker, C.J.2    Parker, R.3
  • 20
    • 0028961870 scopus 로고
    • Turnover mechanisms of the stable yeast PGK1 mRNA
    • Muhlrad D., Decker C.J., and Parker R. Turnover mechanisms of the stable yeast PGK1 mRNA. Mol. Cell Biol. 15 (1995) 2145-2156
    • (1995) Mol. Cell Biol. , vol.15 , pp. 2145-2156
    • Muhlrad, D.1    Decker, C.J.2    Parker, R.3
  • 21
    • 0037080834 scopus 로고    scopus 로고
    • The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements
    • Mukherjee D., Gao M., O'Connor J.P., Raijmakers R., Pruijn G., Lutz C.S., and Wilusz J. The mammalian exosome mediates the efficient degradation of mRNAs that contain AU-rich elements. EMBO J. 21 (2002) 165-174
    • (2002) EMBO J. , vol.21 , pp. 165-174
    • Mukherjee, D.1    Gao, M.2    O'Connor, J.P.3    Raijmakers, R.4    Pruijn, G.5    Lutz, C.S.6    Wilusz, J.7
  • 22
    • 0023143706 scopus 로고
    • Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis
    • Nonet M., Scafe C., Sexton J., and Young R. Eucaryotic RNA polymerase conditional mutant that rapidly ceases mRNA synthesis. Mol. Cell Biol. 7 (1987) 1602-1611
    • (1987) Mol. Cell Biol. , vol.7 , pp. 1602-1611
    • Nonet, M.1    Scafe, C.2    Sexton, J.3    Young, R.4
  • 23
    • 57749171908 scopus 로고    scopus 로고
    • The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast
    • Pelechano V., and Perez-Ortin J.E. The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast. Yeast (2007)
    • (2007) Yeast
    • Pelechano, V.1    Perez-Ortin, J.E.2
  • 24
    • 0037169543 scopus 로고    scopus 로고
    • Characterization and purification of a mammalian endoribonuclease specific for the alpha-globin mRNA
    • Rodgers N.D., Wang Z., and Kiledjian M. Characterization and purification of a mammalian endoribonuclease specific for the alpha-globin mRNA. J. Biol. Chem. 277 (2002) 2597-2604
    • (2002) J. Biol. Chem. , vol.277 , pp. 2597-2604
    • Rodgers, N.D.1    Wang, Z.2    Kiledjian, M.3
  • 26
    • 33745195271 scopus 로고    scopus 로고
    • Yeast Gal4: A transcriptional paradigm revisited
    • Traven A., Jelicic B., and Sopta M. Yeast Gal4: A transcriptional paradigm revisited. EMBO Rep. 7 (2006) 496-499
    • (2006) EMBO Rep. , vol.7 , pp. 496-499
    • Traven, A.1    Jelicic, B.2    Sopta, M.3
  • 27
    • 0037117760 scopus 로고    scopus 로고
    • Messenger RNA degradation: Beginning at the end
    • van Hoof A., and Parker R. Messenger RNA degradation: Beginning at the end. Curr. Biol. 12 (2002) R285-287
    • (2002) Curr. Biol. , vol.12
    • van Hoof, A.1    Parker, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.