-
1
-
-
32544439098
-
Aberrant termination triggers nonsense-mediated mRNA decay
-
Amrani N., Dong S., He F., Ganesan R., Ghosh S., Kervestin S., Li C., Mangus D.A., Spatrick P., and Jacobson A. Aberrant termination triggers nonsense-mediated mRNA decay. Biochem. Soc. Trans. 34 (2006) 39-42
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 39-42
-
-
Amrani, N.1
Dong, S.2
He, F.3
Ganesan, R.4
Ghosh, S.5
Kervestin, S.6
Li, C.7
Mangus, D.A.8
Spatrick, P.9
Jacobson, A.10
-
2
-
-
0031030491
-
A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates
-
Bashkirov V.I., Scherthan H., Solinger J.A., Buerstedde J.M., and Heyer W.D. A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates. J. Cell. Biol. 136 (1997) 761-773
-
(1997)
J. Cell. Biol.
, vol.136
, pp. 761-773
-
-
Bashkirov, V.I.1
Scherthan, H.2
Solinger, J.A.3
Buerstedde, J.M.4
Heyer, W.D.5
-
3
-
-
0037102538
-
Metallo-beta-lactamase fold within nucleic acids processing enzymes: The beta-CASP family
-
Callebaut I., Moshous D., Mornon J.P., and de Villartay J.P. Metallo-beta-lactamase fold within nucleic acids processing enzymes: The beta-CASP family. Nucleic Acids Res. 30 (2002) 3592-3601
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3592-3601
-
-
Callebaut, I.1
Moshous, D.2
Mornon, J.P.3
de Villartay, J.P.4
-
4
-
-
0027198406
-
A small segment of the MAT alpha 1 transcript promotes mRNA decay in Saccharomyces cerevisiae: A stimulatory role for rare codons
-
Caponigro G., Muhlrad D., and Parker R. A small segment of the MAT alpha 1 transcript promotes mRNA decay in Saccharomyces cerevisiae: A stimulatory role for rare codons. Mol. Cell. Biol. 13 (1993) 5141-5148
-
(1993)
Mol. Cell. Biol.
, vol.13
, pp. 5141-5148
-
-
Caponigro, G.1
Muhlrad, D.2
Parker, R.3
-
5
-
-
0029871812
-
Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae
-
Caponigro G., and Parker R. Mechanisms and control of mRNA turnover in Saccharomyces cerevisiae. Microbiol. Rev. 60 (1996) 233-249
-
(1996)
Microbiol. Rev.
, vol.60
, pp. 233-249
-
-
Caponigro, G.1
Parker, R.2
-
8
-
-
19344374029
-
Nonsense-mediated mRNA decay: Molecular insights and mechanistic variations across species
-
Conti E., and Izaurralde E. Nonsense-mediated mRNA decay: Molecular insights and mechanistic variations across species. Curr. Opin. Cell. Biol. 17 (2005) 316-325
-
(2005)
Curr. Opin. Cell. Biol.
, vol.17
, pp. 316-325
-
-
Conti, E.1
Izaurralde, E.2
-
9
-
-
0030726285
-
Lithium toxicity in yeast is due to the inhibition of RNA processing enzymes
-
Dichtl B., Stevens A., and Tollervey D. Lithium toxicity in yeast is due to the inhibition of RNA processing enzymes. EMBO J. 16 (1997) 7184-7195
-
(1997)
EMBO J.
, vol.16
, pp. 7184-7195
-
-
Dichtl, B.1
Stevens, A.2
Tollervey, D.3
-
10
-
-
26244452759
-
The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing
-
Dominski Z., Yang X.C., and Marzluff W.F. The polyadenylation factor CPSF-73 is involved in histone-pre-mRNA processing. Cell 123 (2005) 37-48
-
(2005)
Cell
, vol.123
, pp. 37-48
-
-
Dominski, Z.1
Yang, X.C.2
Marzluff, W.F.3
-
11
-
-
17844361922
-
Ribonucleases J1 and J2: Two novel endoribonucleases in B. subtilis with functional homology to E. coli RNase E
-
Even S., Pellegrini O., Zig L., Labas V., Vinh J., Brechemmier-Baey D., and Putzer H. Ribonucleases J1 and J2: Two novel endoribonucleases in B. subtilis with functional homology to E. coli RNase E. Nucleic Acids Res. 33 (2005) 2141-2152
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2141-2152
-
-
Even, S.1
Pellegrini, O.2
Zig, L.3
Labas, V.4
Vinh, J.5
Brechemmier-Baey, D.6
Putzer, H.7
-
12
-
-
0026038913
-
The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency
-
Gallie D.R. The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency. Genes Dev. 5 (1991) 2108-2116
-
(1991)
Genes Dev.
, vol.5
, pp. 2108-2116
-
-
Gallie, D.R.1
-
13
-
-
2942595765
-
Nonsense-mediated messenger RNA decay is initiated by endonucleolytic cleavage in Drosophila
-
Gatfield D., and Izaurralde E. Nonsense-mediated messenger RNA decay is initiated by endonucleolytic cleavage in Drosophila. Nature 429 (2004) 575-578
-
(2004)
Nature
, vol.429
, pp. 575-578
-
-
Gatfield, D.1
Izaurralde, E.2
-
14
-
-
0028861358
-
Characterization of cis-acting sequences and decay intermediates involved in nonsense-mediated mRNA turnover
-
Hagan K.W., Ruiz-Echevarria M.J., Quan Y., and Peltz S.W. Characterization of cis-acting sequences and decay intermediates involved in nonsense-mediated mRNA turnover. Mol. Cell. Biol. 15 (1995) 809-823
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 809-823
-
-
Hagan, K.W.1
Ruiz-Echevarria, M.J.2
Quan, Y.3
Peltz, S.W.4
-
15
-
-
0028342849
-
The 5′-end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site
-
Henry Y., Wood H., Morrissey J.P., Petfalski E., Kearsey S., and Tollervey D. The 5′-end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. EMBO J. 13 (1994) 2452-2463
-
(1994)
EMBO J.
, vol.13
, pp. 2452-2463
-
-
Henry, Y.1
Wood, H.2
Morrissey, J.P.3
Petfalski, E.4
Kearsey, S.5
Tollervey, D.6
-
16
-
-
0028929369
-
Regulation and intracellular localization of Saccharomyces cerevisiae strand exchange protein 1 (Sep1/Xrn1/Kem1), a multifunctional exonuclease
-
Heyer W.D., Johnson A.W., Reinhart U., and Kolodner R.D. Regulation and intracellular localization of Saccharomyces cerevisiae strand exchange protein 1 (Sep1/Xrn1/Kem1), a multifunctional exonuclease. Mol. Cell. Biol. 15 (1995) 2728-2736
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 2728-2736
-
-
Heyer, W.D.1
Johnson, A.W.2
Reinhart, U.3
Kolodner, R.D.4
-
17
-
-
0036909093
-
The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci
-
Ingelfinger D., Arndt-Jovin D.J., Luhrmann R., and Achsel T. The human LSm1-7 proteins colocalize with the mRNA-degrading enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci. RNA 8 (2002) 1489-1501
-
(2002)
RNA
, vol.8
, pp. 1489-1501
-
-
Ingelfinger, D.1
Arndt-Jovin, D.J.2
Luhrmann, R.3
Achsel, T.4
-
18
-
-
0025768557
-
Strand exchange protein 1 from Saccharomyces cerevisiae. A novel multifunctional protein that contains DNA strand exchange and exonuclease activities
-
Johnson A.W., and Kolodner R.D. Strand exchange protein 1 from Saccharomyces cerevisiae. A novel multifunctional protein that contains DNA strand exchange and exonuclease activities. J. Biol. Chem. 266 (1991) 14046-14054
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 14046-14054
-
-
Johnson, A.W.1
Kolodner, R.D.2
-
19
-
-
0034610344
-
Novel features of the XRN-family in Arabidopsis: Evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm
-
Kastenmayer J.P., and Green P.J. Novel features of the XRN-family in Arabidopsis: Evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm. Proc. Natl. Acad. Sci. USA 97 (2000) 13985-13990
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 13985-13990
-
-
Kastenmayer, J.P.1
Green, P.J.2
-
20
-
-
0023393592
-
Purification and characterization of an activity from Saccharomyces cerevisiae that catalyzes homologous pairing and strand exchange
-
Kolodner R., Evans D.H., and Morrison P.T. Purification and characterization of an activity from Saccharomyces cerevisiae that catalyzes homologous pairing and strand exchange. Proc. Natl. Acad. Sci. USA 84 (1987) 5560-5564
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 5560-5564
-
-
Kolodner, R.1
Evans, D.H.2
Morrison, P.T.3
-
21
-
-
0141819096
-
Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities
-
Lejeune F., Li X., and Maquat L.E. Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities. Mol. Cell. 12 (2003) 675-687
-
(2003)
Mol. Cell.
, vol.12
, pp. 675-687
-
-
Lejeune, F.1
Li, X.2
Maquat, L.E.3
-
22
-
-
27644438330
-
Scavenger decapping activity facilitates 5′ to 3′-mRNA decay
-
Liu H., and Kiledjian M. Scavenger decapping activity facilitates 5′ to 3′-mRNA decay. Mol. Cell. Biol. 25 (2005) 9764-9772
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 9764-9772
-
-
Liu, H.1
Kiledjian, M.2
-
23
-
-
0037009517
-
The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases
-
Liu H., Rodgers N.D., Jiao X., and Kiledjian M. The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases. EMBO J. 21 (2002) 4699-46708
-
(2002)
EMBO J.
, vol.21
, pp. 4699-46708
-
-
Liu, H.1
Rodgers, N.D.2
Jiao, X.3
Kiledjian, M.4
-
24
-
-
0028243751
-
The yeast KEM1 gene encodes a nuclease specific for G4 tetraplex DNA: Implication of in vivo functions for this novel DNA structure
-
Liu Z., and Gilbert W. The yeast KEM1 gene encodes a nuclease specific for G4 tetraplex DNA: Implication of in vivo functions for this novel DNA structure. Cell 77 (1994) 1083-1092
-
(1994)
Cell
, vol.77
, pp. 1083-1092
-
-
Liu, Z.1
Gilbert, W.2
-
25
-
-
34249101864
-
5′ to 3′-exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5′-stability of mRNA
-
Mathy N., Benard L., Pellegrini O., Daou R., Wen T., and Condon C. 5′ to 3′-exoribonuclease activity in bacteria: Role of RNase J1 in rRNA maturation and 5′-stability of mRNA. Cell 129 (2007) 681-692
-
(2007)
Cell
, vol.129
, pp. 681-692
-
-
Mathy, N.1
Benard, L.2
Pellegrini, O.3
Daou, R.4
Wen, T.5
Condon, C.6
-
26
-
-
0029824147
-
The yeast HAL2 nucleotidase is an in vivo target of salt toxicity
-
Murguia J.R., Belles J.M., and Serrano R. The yeast HAL2 nucleotidase is an in vivo target of salt toxicity. J. Biol. Chem. 271 (1996) 29029-29033
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 29029-29033
-
-
Murguia, J.R.1
Belles, J.M.2
Serrano, R.3
-
27
-
-
0346362328
-
The 5′ to 3′-exoribonuclease xrn-1 is essential for ventral epithelial enclosure during C. elegans embryogenesis
-
Newbury S., and Woollard A. The 5′ to 3′-exoribonuclease xrn-1 is essential for ventral epithelial enclosure during C. elegans embryogenesis. RNA 10 (2004) 59-65
-
(2004)
RNA
, vol.10
, pp. 59-65
-
-
Newbury, S.1
Woollard, A.2
-
28
-
-
32544459316
-
Control of mRNA stability in eukaryotes
-
Newbury S.F. Control of mRNA stability in eukaryotes. Biochem. Soc. Trans. 34 (2006) 30-34
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 30-34
-
-
Newbury, S.F.1
-
29
-
-
15444368560
-
Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome
-
Orban T.I., and Izaurralde E. Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome. RNA 11 (2005) 459-469
-
(2005)
RNA
, vol.11
, pp. 459-469
-
-
Orban, T.I.1
Izaurralde, E.2
-
30
-
-
0036842854
-
Bacillus subtilis YhaM, a member of a new family of 3′ to 5′-exonucleases in gram-positive bacteria
-
Oussenko I.A., Sanchez R., and Bechhofer D.H. Bacillus subtilis YhaM, a member of a new family of 3′ to 5′-exonucleases in gram-positive bacteria. J. Bacteriol. 184 (2002) 6250-6259
-
(2002)
J. Bacteriol.
, vol.184
, pp. 6250-6259
-
-
Oussenko, I.A.1
Sanchez, R.2
Bechhofer, D.H.3
-
31
-
-
0032529291
-
Mutational analysis of exoribonuclease I from Saccharomyces cerevisiae
-
Page A.M., Davis K., Molineux C., Kolodner R.D., and Johnson A.W. Mutational analysis of exoribonuclease I from Saccharomyces cerevisiae. Nucleic Acids Res. 26 (1998) 3707-3716
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3707-3716
-
-
Page, A.M.1
Davis, K.2
Molineux, C.3
Kolodner, R.D.4
Johnson, A.W.5
-
32
-
-
0742288008
-
The enzymes and control of eukaryotic mRNA turnover
-
Parker R., and Song H. The enzymes and control of eukaryotic mRNA turnover. Nat. Struct. Mol. Biol. 11 (2004) 121-127
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 121-127
-
-
Parker, R.1
Song, H.2
-
33
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., Khainovski N., Pillai S., Dey S., Daniels S., Purkayastha S., Jushaz P., et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell Proteomics 3 (2004) 1154-1169
-
(2004)
Mol. Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Jushaz, P.12
-
34
-
-
0032584799
-
Cloning and characterization of human Sep1 (hSEP1) gene and cytoplasmic localization of its product
-
Sato Y., Shimamoto A., Shobuike T., Sugimoto M., Ikeda H., Kuroda S., and Furuichi Y. Cloning and characterization of human Sep1 (hSEP1) gene and cytoplasmic localization of its product. DNA Res. 5 (1998) 241-246
-
(1998)
DNA Res.
, vol.5
, pp. 241-246
-
-
Sato, Y.1
Shimamoto, A.2
Shobuike, T.3
Sugimoto, M.4
Ikeda, H.5
Kuroda, S.6
Furuichi, Y.7
-
35
-
-
0037968357
-
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
-
Sheth U., and Parker R. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300 (2003) 805-808
-
(2003)
Science
, vol.300
, pp. 805-808
-
-
Sheth, U.1
Parker, R.2
-
36
-
-
0032794289
-
Active-site mutations in the Xrn1p exoribonuclease of Saccharomyces cerevisiae reveal a specific role in meiosis
-
Solinger J.A., Pascolini D., and Heyer W.D. Active-site mutations in the Xrn1p exoribonuclease of Saccharomyces cerevisiae reveal a specific role in meiosis. Mol. Cell. Biol. 19 (1999) 5930-5942
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 5930-5942
-
-
Solinger, J.A.1
Pascolini, D.2
Heyer, W.D.3
-
37
-
-
3242691607
-
AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets
-
Souret F.F., Kastenmayer J.P., and Green P.J. AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets. Mol. Cell. 15 (2004) 173-183
-
(2004)
Mol. Cell.
, vol.15
, pp. 173-183
-
-
Souret, F.F.1
Kastenmayer, J.P.2
Green, P.J.3
-
38
-
-
0018902741
-
Purification and characterization of a Saccharomyces cerevisiae exoribonuclease which yields 5′-mononucleotides by a 5′-leads to 3′-mode of hydrolysis
-
Stevens A. Purification and characterization of a Saccharomyces cerevisiae exoribonuclease which yields 5′-mononucleotides by a 5′-leads to 3′-mode of hydrolysis. J. Biol. Chem. 255 (1980) 3080-3085
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 3080-3085
-
-
Stevens, A.1
-
39
-
-
0034741188
-
5′-exoribonuclease 1: Xrn1
-
Stevens A. 5′-exoribonuclease 1: Xrn1. Methods Enzymol. 342 (2001) 251-259
-
(2001)
Methods Enzymol.
, vol.342
, pp. 251-259
-
-
Stevens, A.1
-
40
-
-
0025720230
-
Fragments of the internal transcribed spacer 1 of pre-rRNA accumulate in Saccharomyces cerevisiae lacking 5′ to 3′-exoribonuclease 1
-
Stevens A., Hsu C.L., Isham K.R., and Larimer F.W. Fragments of the internal transcribed spacer 1 of pre-rRNA accumulate in Saccharomyces cerevisiae lacking 5′ to 3′-exoribonuclease 1. J. Bacteriol. 173 (1991) 7024-7028
-
(1991)
J. Bacteriol.
, vol.173
, pp. 7024-7028
-
-
Stevens, A.1
Hsu, C.L.2
Isham, K.R.3
Larimer, F.W.4
-
41
-
-
0029024239
-
5′-exonuclease-2 of Saccharomyces cerevisiae. Purification and features of ribonuclease activity with comparison to 5′-exonuclease-1
-
Stevens A., and Poole T.L. 5′-exonuclease-2 of Saccharomyces cerevisiae. Purification and features of ribonuclease activity with comparison to 5′-exonuclease-1. J. Biol. Chem. 270 (1995) 16063-16069
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 16063-16069
-
-
Stevens, A.1
Poole, T.L.2
-
42
-
-
0029848652
-
Requirement of S. pombe exonuclease II, a homologue of S. cerevisiae Sep1, for normal mitotic growth and viability
-
Szankasi P., and Smith G.R. Requirement of S. pombe exonuclease II, a homologue of S. cerevisiae Sep1, for normal mitotic growth and viability. Curr. Genet. 30 (1996) 284-293
-
(1996)
Curr. Genet.
, vol.30
, pp. 284-293
-
-
Szankasi, P.1
Smith, G.R.2
-
43
-
-
0028796701
-
The sep1 mutant of Saccharomyces cerevisiae arrests in pachytene and is deficient in meiotic recombination
-
Tishkoff D.X., Rockmill B., Roeder G.S., and Kolodner R.D. The sep1 mutant of Saccharomyces cerevisiae arrests in pachytene and is deficient in meiotic recombination. Genetics 139 (1995) 495-509
-
(1995)
Genetics
, vol.139
, pp. 495-509
-
-
Tishkoff, D.X.1
Rockmill, B.2
Roeder, G.S.3
Kolodner, R.D.4
-
44
-
-
33645650876
-
Sodium-induced GCN4 expression controls the accumulation of the 5′ to 3′-RNA degradation inhibitor, 3′-phosphoadenosine 5′-phosphate
-
Todeschini A.L., Condon C., and Benard L. Sodium-induced GCN4 expression controls the accumulation of the 5′ to 3′-RNA degradation inhibitor, 3′-phosphoadenosine 5′-phosphate. J. Biol. Chem. 281 (2006) 3276-3282
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 3276-3282
-
-
Todeschini, A.L.1
Condon, C.2
Benard, L.3
-
45
-
-
23844484578
-
Regulation and surveillance of normal and 3′-extended forms of the yeast aci-reductone dioxygenase mRNA by RNase III cleavage and exonucleolytic degradation
-
Zer C., and Chanfreau G. Regulation and surveillance of normal and 3′-extended forms of the yeast aci-reductone dioxygenase mRNA by RNase III cleavage and exonucleolytic degradation. J. Biol. Chem. 280 (2005) 28997-29003
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 28997-29003
-
-
Zer, C.1
Chanfreau, G.2
-
46
-
-
0032570701
-
Strand exchange protein 1 (Sep1) from Saccharomyces cerevisiae does not promote branch migration in vitro
-
Zhang Z., Simons A.M., Prabhu V.P., and Chen J. Strand exchange protein 1 (Sep1) from Saccharomyces cerevisiae does not promote branch migration in vitro. J. Biol. Chem. 273 (1998) 4950-4956
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 4950-4956
-
-
Zhang, Z.1
Simons, A.M.2
Prabhu, V.P.3
Chen, J.4
|