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Volumn 55, Issue 6, 2008, Pages 476-480

How epigenomics contributes to the understanding of gene regulation in Toxoplasma gondii

Author keywords

Apicomplexa; Epigenetics; Plasmodium; Toxoplasma

Indexed keywords

HISTONE;

EID: 57749177428     PISSN: 10665234     EISSN: 15507408     Source Type: Journal    
DOI: 10.1111/j.1550-7408.2008.00366.x     Document Type: Article
Times cited : (13)

References (42)
  • 3
    • 23144448511 scopus 로고    scopus 로고
    • Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains
    • Balaji, S., Babu, M. M., Iyer, L. M. Aravind, L. 2005. Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains. Nucleic Acids Res., 33 : 3994 4006.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3994-4006
    • Balaji, S.1    Babu, M.M.2    Iyer, L.M.3    Aravind, L.4
  • 4
    • 44249087881 scopus 로고    scopus 로고
    • The transcription of bradyzoite genes in Toxoplasma gondii is controlled by autonomous promoter elements
    • Behnke, M. S., Radke, J. B., Smith, A. T., Sullivan, W. J. Jr. White, M. W. 2008. The transcription of bradyzoite genes in Toxoplasma gondii is controlled by autonomous promoter elements. Mol. Microbiol., 68 : 1502 1518.
    • (2008) Mol. Microbiol. , vol.68 , pp. 1502-1518
    • Behnke, M.S.1    Radke, J.B.2    Smith, A.T.3    Sullivan Jr., W.J.4    White, M.W.5
  • 5
    • 30944448223 scopus 로고    scopus 로고
    • Pair of unusual GCN5 histone acetyltransferases and ADA2 homologues in the protozoan parasite Toxoplasma gondii
    • Bhatti, M. M., Livingston, M., Mullapudi, N. Sullivan, W. J. Jr. 2006. Pair of unusual GCN5 histone acetyltransferases and ADA2 homologues in the protozoan parasite Toxoplasma gondii. Eukaryotic Cell, 5 : 62 76.
    • (2006) Eukaryotic Cell , vol.5 , pp. 62-76
    • Bhatti, M.M.1    Livingston, M.2    Mullapudi, N.3    Sullivan Jr., W.J.4
  • 6
    • 0035423749 scopus 로고    scopus 로고
    • SAGA is an essential in vivo target of the yeast acidic activator Gal4p
    • Bhaumik, S. R. Green, M. R. 2001. SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev., 15 : 1935 1945.
    • (2001) Genes Dev. , vol.15 , pp. 1935-1945
    • Bhaumik, S.R.1    Green, M.R.2
  • 7
    • 0030901972 scopus 로고    scopus 로고
    • Bradyzoite-specific gene expression in Toxoplasma gondii requires minimal genomic elements
    • Bohne, W., Wirsing, A. Gross, U. 1997. Bradyzoite-specific gene expression in Toxoplasma gondii requires minimal genomic elements. Mol. Biochem. Parasitol., 85 : 89 98.
    • (1997) Mol. Biochem. Parasitol. , vol.85 , pp. 89-98
    • Bohne, W.1    Wirsing, A.2    Gross, U.3
  • 8
    • 25444456367 scopus 로고    scopus 로고
    • Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: Conserved features and differences relative to other eukaryotes
    • Callebaut, I., Prat, K., Meurice, E., Mornon, J. P. Tomavo, S. 2005. Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes. BMC Genomics, 6 : 100.
    • (2005) BMC Genomics , vol.6 , pp. 100
    • Callebaut, I.1    Prat, K.2    Meurice, E.3    Mornon, J.P.4    Tomavo, S.5
  • 9
    • 34447128131 scopus 로고    scopus 로고
    • RNA polymerase II carboxy-terminal domain with multiple connections
    • Cho, E. J. 2007. RNA polymerase II carboxy-terminal domain with multiple connections. Exp. Mol. Med., 39 : 247 254.
    • (2007) Exp. Mol. Med. , vol.39 , pp. 247-254
    • Cho, E.J.1
  • 11
    • 33747869931 scopus 로고    scopus 로고
    • Mapping histone modifications by nucleosome immunoprecipitation
    • Clark, D. J. Shen, C. H. 2006. Mapping histone modifications by nucleosome immunoprecipitation. Methods Enzymol., 410 : 416 430.
    • (2006) Methods Enzymol. , vol.410 , pp. 416-430
    • Clark, D.J.1    Shen, C.H.2
  • 12
    • 4444339460 scopus 로고    scopus 로고
    • Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum
    • Coulson, R. M., Hall, N. Ouzounis, C. A. 2004. Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum. Genome Res., 14 : 1548 1554.
    • (2004) Genome Res. , vol.14 , pp. 1548-1554
    • Coulson, R.M.1    Hall, N.2    Ouzounis, C.A.3
  • 15
    • 3042701155 scopus 로고    scopus 로고
    • Epigenomics: Beyond CpG islands
    • Fazzari, M. J. Greally, J. M. 2004. Epigenomics: beyond CpG islands. Nat. Rev. Genet., 5 : 446 455.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 446-455
    • Fazzari, M.J.1    Greally, J.M.2
  • 16
    • 1242309509 scopus 로고    scopus 로고
    • Characterization of cytosine methylated regions and 5-cytosine DNA methyltransferase (Ehmeth) in the protozoan parasite Entamoeba histolytica
    • Fisher, O., Siman-Tov, R. Ankri, S. 2004. Characterization of cytosine methylated regions and 5-cytosine DNA methyltransferase (Ehmeth) in the protozoan parasite Entamoeba histolytica. Nucleic Acids Res., 32 : 287 297.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 287-297
    • Fisher, O.1    Siman-Tov, R.2    Ankri, S.3
  • 17
    • 40949110918 scopus 로고    scopus 로고
    • Toxoplasma gondii and Cryptosporidium parvum lack detectable DNA cytosine methylation
    • Epub ahead of publication January 4, 2008
    • Gissot, M., Choi, S. W., Thompson, R. F., Greally, J. M. Kim, K. 2008. Toxoplasma gondii and Cryptosporidium parvum lack detectable DNA cytosine methylation. Eukaryotic Cell. Epub ahead of publication January 4, 2008, 7 : 537 540.
    • (2008) Eukaryotic Cell. , vol.7 , pp. 537-540
    • Gissot, M.1    Choi, S.W.2    Thompson, R.F.3    Greally, J.M.4    Kim, K.5
  • 18
    • 34347334624 scopus 로고    scopus 로고
    • Epigenomic modifications predict active promoters and gene structure in Toxoplasma gondii
    • Gissot, M., Kelly, K. A., Ajioka, J. W., Greally, J. M. Kim, K. 2007. Epigenomic modifications predict active promoters and gene structure in Toxoplasma gondii. PLoS Pathog., 3 : e77.
    • (2007) PLoS Pathog. , vol.3
    • Gissot, M.1    Kelly, K.A.2    Ajioka, J.W.3    Greally, J.M.4    Kim, K.5
  • 20
    • 37049002223 scopus 로고    scopus 로고
    • Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes
    • Iyer, L. M., Anantharaman, V., Wolf, M. Y. Aravind, L. 2008. Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes. Int. J. Parasitol., 38 : 1 31.
    • (2008) Int. J. Parasitol. , vol.38 , pp. 1-31
    • Iyer, L.M.1    Anantharaman, V.2    Wolf, M.Y.3    Aravind, L.4
  • 21
    • 30944458014 scopus 로고    scopus 로고
    • Developmentally regulated DNA methylation in Dictyostelium discoideum
    • Katoh, M., Curk, T., Xu, Q., Zupan, B., Kuspa, A. Shaulsky, G. 2006. Developmentally regulated DNA methylation in Dictyostelium discoideum. Eukaryotic Cell, 5 : 18 25.
    • (2006) Eukaryotic Cell , vol.5 , pp. 18-25
    • Katoh, M.1    Curk, T.2    Xu, Q.3    Zupan, B.4    Kuspa, A.5    Shaulsky, G.6
  • 22
    • 16244392125 scopus 로고    scopus 로고
    • Transcriptional regulation of two stage-specifically expressed genes in the protozoan parasite Toxoplasma gondii
    • Kibe, M. K., Coppin, A., Dendouga, N., Oria, G., Meurice, E., Mortuaire, M., Madec, E. Tomavo, S. 2005. Transcriptional regulation of two stage-specifically expressed genes in the protozoan parasite Toxoplasma gondii. Nucleic Acids Res., 33 : 1722 1736.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 1722-1736
    • Kibe, M.K.1    Coppin, A.2    Dendouga, N.3    Oria, G.4    Meurice, E.5    Mortuaire, M.6    Madec, E.7    Tomavo, S.8
  • 23
    • 1542285447 scopus 로고    scopus 로고
    • Toxoplasma gondii: The model apicomplexan
    • Kim, K. Weiss, L. M. 2004. Toxoplasma gondii: the model apicomplexan. Int. J. Parasitol., 34 : 423 432.
    • (2004) Int. J. Parasitol. , vol.34 , pp. 423-432
    • Kim, K.1    Weiss, L.M.2
  • 25
    • 33847070442 scopus 로고    scopus 로고
    • The role of chromatin during transcription
    • Li, B., Carey, M. Workman, J. L. 2007. The role of chromatin during transcription. Cell, 128 : 707 719.
    • (2007) Cell , vol.128 , pp. 707-719
    • Li, B.1    Carey, M.2    Workman, J.L.3
  • 28
    • 36549069632 scopus 로고    scopus 로고
    • 5′ flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites
    • Lopez-Rubio, J. J., Gontijo, A. M., Nunes, M. C., Issar, N., Hernandez Rivas, R. Scherf, A. 2007. 5′ flanking region of var genes nucleate histone modification patterns linked to phenotypic inheritance of virulence traits in malaria parasites. Mol. Microbiol., 66 : 1296 1305.
    • (2007) Mol. Microbiol. , vol.66 , pp. 1296-1305
    • Lopez-Rubio, J.J.1    Gontijo, A.M.2    Nunes, M.C.3    Issar, N.4    Hernandez Rivas, R.5    Scherf, A.6
  • 29
    • 1542285460 scopus 로고    scopus 로고
    • Identification and characterisation of a regulatory region in the Toxoplasma gondii hsp70 genomic locus
    • Ma, Y. F., Zhang, Y., Kim, K. Weiss, L. M. 2004. Identification and characterisation of a regulatory region in the Toxoplasma gondii hsp70 genomic locus. Int. J. Parasitol., 34 : 333 346.
    • (2004) Int. J. Parasitol. , vol.34 , pp. 333-346
    • Ma, Y.F.1    Zhang, Y.2    Kim, K.3    Weiss, L.M.4
  • 30
    • 0032036479 scopus 로고    scopus 로고
    • Expressed sequence tag analysis of the bradyzoite stage of Toxoplasma gondii: Identification of developmentally regulated genes
    • Manger, I. D., Hehl, A., Parmley, S., Sibley, L. D., Marra, M., Hillier, L., Waterston, R. Boothroyd, J. C. 1998. Expressed sequence tag analysis of the bradyzoite stage of Toxoplasma gondii: identification of developmentally regulated genes. Infect. Immun., 66 : 1632 1637.
    • (1998) Infect. Immun. , vol.66 , pp. 1632-1637
    • Manger, I.D.1    Hehl, A.2    Parmley, S.3    Sibley, L.D.4    Marra, M.5    Hillier, L.6    Waterston, R.7    Boothroyd, J.C.8
  • 31
    • 43049152845 scopus 로고    scopus 로고
    • Poised RNA polymerase II gives pause for thought
    • Margaritis, T. Holstege, F. C. 2008. Poised RNA polymerase II gives pause for thought. Cell, 133 : 581 584.
    • (2008) Cell , vol.133 , pp. 581-584
    • Margaritis, T.1    Holstege, F.C.2
  • 32
    • 27644510544 scopus 로고    scopus 로고
    • The transcription machinery and the molecular toolbox to control gene expression in Toxoplasma gondii and other protozoan parasites
    • Meissner, M. Soldati, D. 2005. The transcription machinery and the molecular toolbox to control gene expression in Toxoplasma gondii and other protozoan parasites. Microbes Infect., 7 : 1376 1384.
    • (2005) Microbes Infect. , vol.7 , pp. 1376-1384
    • Meissner, M.1    Soldati, D.2
  • 34
    • 17044399754 scopus 로고    scopus 로고
    • Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit
    • Radonjic, M., Andrau, J. C., Lijnzaad, P., Kemmeren, P., Kockelkorn, T. T., van Leenen, D., van Berkum, N. L. Holstege, F. C. 2005. Genome-wide analyses reveal RNA polymerase II located upstream of genes poised for rapid response upon S. cerevisiae stationary phase exit. Mol. Cell, 18 : 171 183.
    • (2005) Mol. Cell , vol.18 , pp. 171-183
    • Radonjic, M.1    Andrau, J.C.2    Lijnzaad, P.3    Kemmeren, P.4    Kockelkorn, T.T.5    Van Leenen, D.6    Van Berkum, N.L.7    Holstege, F.C.8
  • 35
    • 33750488431 scopus 로고    scopus 로고
    • The genomic landscape of histone modifications in human T cells
    • Roh, T. Y., Cuddapah, S., Cui, K. Zhao, K. 2006. The genomic landscape of histone modifications in human T cells. Proc. Natl. Acad. Sci. USA, 103 : 15782 15787.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 15782-15787
    • Roh, T.Y.1    Cuddapah, S.2    Cui, K.3    Zhao, K.4
  • 38
    • 0036096929 scopus 로고    scopus 로고
    • Genetic analysis of tachyzoite to bradyzoite differentiation mutants in Toxoplasma gondii reveals a hierarchy of gene induction
    • Singh, U., Brewer, J. L. Boothroyd, J. C. 2002. Genetic analysis of tachyzoite to bradyzoite differentiation mutants in Toxoplasma gondii reveals a hierarchy of gene induction. Mol. Microbiol., 44 : 721 733.
    • (2002) Mol. Microbiol. , vol.44 , pp. 721-733
    • Singh, U.1    Brewer, J.L.2    Boothroyd, J.C.3
  • 39
    • 29144444618 scopus 로고    scopus 로고
    • MYST family histone acetyltransferases in the protozoan parasite Toxoplasma gondii
    • Smith, A. T., Tucker-Samaras, S. D., Fairlamb, A. H. Sullivan, W. J. Jr. 2005. MYST family histone acetyltransferases in the protozoan parasite Toxoplasma gondii. Eukaryotic Cell, 4 : 2057 2065.
    • (2005) Eukaryotic Cell , vol.4 , pp. 2057-2065
    • Smith, A.T.1    Tucker-Samaras, S.D.2    Fairlamb, A.H.3    Sullivan Jr., W.J.4
  • 40
    • 33745411638 scopus 로고    scopus 로고
    • Histone-mediated gene activation in Toxoplasma gondii
    • Sullivan, W. J. Jr. Hakimi, M. A. 2006. Histone-mediated gene activation in Toxoplasma gondii. Mol. Biochem. Parasitol., 148 : 109 116.
    • (2006) Mol. Biochem. Parasitol. , vol.148 , pp. 109-116
    • Sullivan Jr., W.J.1    Hakimi, M.A.2
  • 41
    • 33747881750 scopus 로고    scopus 로고
    • The general transcription machinery and general cofactors
    • Thomas, M. C. Chiang, C. M. 2006. The general transcription machinery and general cofactors. Crit. Rev. Biochem. Mol. Biol., 41 : 105 178.
    • (2006) Crit. Rev. Biochem. Mol. Biol. , vol.41 , pp. 105-178
    • Thomas, M.C.1    Chiang, C.M.2
  • 42
    • 33745085215 scopus 로고    scopus 로고
    • The complete set of Toxoplasma gondii ribosomal protein genes contains two conserved promoter elements
    • Van Poppel, N. F., Welagen, J., Vermeulen, A. N. Schaap, D. 2006. The complete set of Toxoplasma gondii ribosomal protein genes contains two conserved promoter elements. Parasitology, 133 : 19 31.
    • (2006) Parasitology , vol.133 , pp. 19-31
    • Van Poppel, N.F.1    Welagen, J.2    Vermeulen, A.N.3    Schaap, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.