Ruffling of metalloporphyrins bound to IsdG and IsdI, two heme-degrading enzymes in Staphylococcus aureus

Journal of Biological Chemistry

Volumn 283, Issue 45, 2008, Pages 30957-30963

  Woo, Cheol Lee ^a   Reniere, Michelle L ^b   Skaar, Eric P ^b   Murphy, Michael E P ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDES; BINDING ENERGY; BINDING SITES; CHLORINE COMPOUNDS; COBALT; COBALT COMPOUNDS; COORDINATION REACTIONS; DEGRADATION; ELECTROCHEMICAL CORROSION; FATTY ACIDS; HEMOGLOBIN; HYDROGEN; HYDROGEN BONDS; OXIDATION; OXYGEN; PROTEINS; TRANSITION METALS;

APOPROTEINS; ARG RESIDUES; BINDING CLEFTS; CHLORIDE IONS; CONFORMATIONAL CHANGES; CRITICAL RESIDUES; DEGRADING ENZYMES; HEME OXYGENASES; INTRACELLULAR COMPONENTS; MESO CARBONS; METALLO PORPHYRINS; PEROXIDE INTERMEDIATES; PORPHYRIN RINGS; PROPIONIC ACIDS; PROTOPORPHYRIN; REACTION MECHANISMS; SALT BRIDGES; SIDE CHAINS; STAPHYLOCOCCUS AUREUS; STERIC INTERACTIONS; UPTAKE SYSTEMS;

PORPHYRINS;

AMIDE; ARGININE; ASPARAGINE; BACTERIAL ENZYME; BACTERIAL PROTEIN; CHLORIDE ION; HEME; HEME OXYGENASE; HEMIN; HISTIDINE; ISDG HEME DEGRADING ENZYME; ISDI HEME DEGRADING ENZYME; ISOLEUCINE; METALLOPORPHYRIN; PEROXIDE; PROPIONIC ACID; PROTOPORPHYRIN; PROTOPORPHYRIN COBALT; PROTOPORPHYRIN IRON; UNCLASSIFIED DRUG;

ARTICLE; BAY REGION BINDING SITE; CRYSTAL STRUCTURE; HYDROGEN BOND; OXIDATION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN DEGRADATION; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; STAPHYLOCOCCUS AUREUS; STRUCTURAL PROTEOMICS;

APOENZYMES; BACTERIAL PROTEINS; BINDING SITES; COBALT; CRYSTALLOGRAPHY, X-RAY; HEMIN; MIXED FUNCTION OXYGENASES; OXIDATION-REDUCTION; OXYGENASES; PROTEIN STRUCTURE, TERTIARY; PROTOPORPHYRINS; STAPHYLOCOCCUS AUREUS;

EUKARYOTA; PROKARYOTA; STAPHYLOCOCCUS AUREUS;

EID: 57649233088     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M709486200     Document Type: Article

References (49)

1. Weems, J. J., Jr. (2001) Postgrad. Med. 110, 24-26, 29-31, 35-36
2. Ratledge, C., and Dover, L. G. (2000) Annu. Rev. Microbiol. 54, 881-941
3. Zeller, J. L., Burke, A. E., and Glass, R. M. (2007) J. Am. Med. Assoc. 298, 1826
4. Wandersman, C., and Delepelaire, P. (2004) Annu. Rev. Microbiol. 58, 611-647
5. Radtke, A. L., and O'Riordan, M. X. (2006) Cell. Microbiol. 8, 1720-1729
6. Stojiljkovic, I., and Perkins-Balding, D. (2002) DNA Cell Biol. 21, 281-295
7. Murphy, E. R., Sacco, R. E., Dickenson, A., Metzger, D. J., Hu, Y., Orndorff, P. E., and Connell, T. D. (2002) Infect. Immun. 70, 5390-5403
8. Skaar, E. P., Humayun, M., Bae, T., DeBord, K. L., and Schneewind, O. (2004) Science 305, 1626-1628
9. Stojiljkovic, I., Hwa, V., de Saint Martin, L., O'Gaora, P., Nassif, X., Heffron, F., and So, M. (1995) Mol. Microbiol. 15, 531-541
10. Mazmanian, S. K., Skaar, E. P., Gaspar, A. H., Humayun, M., Gornicki, P., Jelenska, J., Joachmiak, A., Missiakas, D. M., and Schneewind, O. (2003) Science 299, 906-909
11. Grigg, J. C., Vermeiren, C. L., Heinrichs, D. E., and Murphy, M. E. (2007) Mol. Microbiol. 63, 139-149
12. Vermeiren, C. L., Pluym, M., Mack, J., Heinrichs, D. E., and Stillman, M. J. (2006) Biochemistry 45, 12867-12875
13. Skaar, E. P., and Schneewind, O. (2004) Microbes Infect. 6, 390-397
14. Grigg, J. C., Vermeiren, C. L., Heinrichs, D. E., and Murphy, M. E. (2007) J. Biol. Chem. 282, 28815-28822
15. Mack, J., Vermeiren, C., Heinrichs, D. E., and Stillman, M. J. (2004) Biochem. Biophys. Res. Commun. 320, 781-788
16. Skaar, E. P., Gaspar, A. H., and Schneewind, O. (2004) J. Biol. Chem. 279, 436-443
17. Wu, R., Skaar, E. P., Zhang, R., Joachimiak, G., Gornicki, P., Schneewind, O., and Joachimiak, A. (2005) J. Biol. Chem. 280, 2840-2846
18. Skaar, E. P., Gaspar, A. H., and Schneewind, O. (2006) J. Bacteriol. 188, 1071-1080
19. Puri, S., and O'Brian, M. R. (2006) J. Bacteriol. 188, 6476-6482
20. Chan, A. C., Lelj-Garolla, B., Rosell, F. I., Pedersen, K. A., Mauk, A. G., and Murphy, M. E. (2006) J. Mol. Biol. 362, 1108-1119
21. Collaborative Computational Project, No. 4 (1995) Acta Crystallogr. Sect. D Biol. Crystallogr. 50, 760-763
22. Vagin, A., and Teplyakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
23. Perrakis, A., Morris, R., and Lamzin, V. S. (1999) Nat. Struct. Biol. 6, 458-463
24. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
25. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
26. Jentzen, W., Song, X. Z., and Shelnutt, J. A. (1997) J. Phys. Chem. 101, 1684-1699
27. DeLano, W. L. (2002) The PyMOL Molecular Graphics System, Version 0.99, DeLano Scientific, Palo Alto, CA
28. Lee, B., and Richards, F. M. (1971) J. Mol. Biol. 55, 379-400
29. Brucker, E. A., Olson, J. S., Phillips, G. N., Jr., Dou, Y., and Ikeda-Saito, M. (1996) J. Biol. Chem. 271, 25419-25422
30. Jentzen, W., Ma, J. G., and Shelnutt, J. A. (1998) Biophys. J. 74, 753-763
31. Pellicena, P., Karow, D. S., Boon, E. M., Marletta, M. A., and Kuriyan, J. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 12854-12859
32. Ma, J. G., Zhang, J., Franco, R., Jia, S. L., Moura, I., Moura, J. J., Kroneck, P. M., and Shelnutt, J. A. (1998) Biochemistry 37, 12431-12442
33. Andreeva, A., Howorth, D., Brenner, S. E., Hubbard, T. J., Chothia, C., and Murzin, A. G. (2004) Nucleic Acids Res. 32, D226-D229
34. Sciara, G., Kendrew, S. G., Miele, A. E., Marsh, N. G., Federici, L., Malatesta, F., Schimperna, G., Savino, C., and Vallone, B. (2003) EMBO J. 22, 205-215
35. Reniere, M. L., Torres, V. J., and Skaar, E. P. (2007) Biometals 20, 333-345
36. Wilks, A., and Ortiz de Montellano, P. R. (1993) J. Biol. Chem. 268, 22357-22362
37. Brantley, R. E., Jr., Smerdon, S. J., Wilkinson, A. J., Singleton, E. W., and Olson, J. S. (1993) J. Biol. Chem. 268, 6995-7010
38. Binkowski, T. A., Naghibzadeh, S., and Liang, J. (2003) Nucleic Acids Res. 31, 3352-3355
39. Roeser, D., Preusser-Kunze, A., Schmidt, B., Gasow, K., Wittmann, J. G., Dierks, T., von Figura, K., and Rudolph, M. G. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 81-86
40. Sono, M., Roach, M. P., Coulter, E. D., and Dawson, J. H. (1996) Chem. Rev. 96, 2841-2888
41. Friedman, J., Meharenna, Y. T., Wilks, A., and Poulos, T. L. (2007) J. Biol. Chem. 282, 1066-1071
42. Wegele, R., Tasler, R., Zeng, Y., Rivera, M., and Frankenberg-Dinkel, N. (2004) J. Biol. Chem. 279, 45791-45802
43. Friedman, J., Lad, L., Deshmukh, R., Li, H., Wilks, A., and Poulos, T. L. (2003) J. Biol. Chem. 278, 34654-34659
44. Unno, M., Matsui, T., Chu, G. C., Couture, M., Yoshida, T., Rousseau, D. L., Olson, J. S., and Ikeda-Saito, M. (2004) J. Biol. Chem. 279, 21055-21061
45. Suits, M. D., Jaffer, N., and Jia, Z. (2006) J. Biol. Chem. 281, 36776-36782
46. Nakamura, M. (2006) Coord. Chem. Rev. 250, 2271-2294
47. Shokhireva, T., Berry, R. E., Uno, E., Balfour, C. A., Zhang, H., and Walker, F. A. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 3778-3783
48. Stojiljkovic, I., Kumar, V., and Srinivasan, N. (1999) Mol. Microbiol. 31, 429-442
49. Bozja, J., Yi, K., Shafer, W. M., and Stojiljkovic, I. (2004) Int. J. Antimicrob. Agents 24, 578-584