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Volumn , Issue , 2007, Pages 5017-5020

Prediction of specific protein-DNA recognition by knowledge-based two-body and three-body interaction potentials

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; DNA SEQUENCES; GENES; POTENTIAL ENERGY;

EID: 57649232774     PISSN: 05891019     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/IEMBS.2007.4353467     Document Type: Conference Paper
Times cited : (4)

References (12)
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    • M.L. Bulyk, "Computational prediction of transcription-factor binding site locations," Genome Biology 5 (2004).
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    • Bulyk, M.L.1
  • 3
    • 0035882533 scopus 로고    scopus 로고
    • A distance-dependent atomic knowledge-based potential for improved protein structure selection
    • H. Lu, and J. Skolnick, "A distance-dependent atomic knowledge-based potential for improved protein structure selection," Proteins-Structure Function and Genetics 44 (2001) 223-232
    • (2001) Proteins-Structure Function and Genetics , vol.44 , pp. 223-232
    • Lu, H.1    Skolnick, J.2
  • 5
    • 0347481194 scopus 로고    scopus 로고
    • Application of statistical potentials to protein structure refinement from low resolution Ab initio models
    • H. Lu, and J. Skolnick, "Application of statistical potentials to protein structure refinement from low resolution Ab initio models," Biopolymers 70 (2003) 575-584
    • (2003) Biopolymers , vol.70 , pp. 575-584
    • Lu, H.1    Skolnick, J.2
  • 6
    • 0037340493 scopus 로고    scopus 로고
    • Development of unified statistical potentials describing protein-protein interactions
    • H. Lu, L. Lu, and J. Skolnick, "Development of unified statistical potentials describing protein-protein interactions," Biophysical Journal 84 (2003) 1895-1901
    • (2003) Biophysical Journal , vol.84 , pp. 1895-1901
    • Lu, H.1    Lu, L.2    Skolnick, J.3
  • 7
    • 0032524713 scopus 로고    scopus 로고
    • Quantitative parameters for amino acid-base interaction: Implications for prediction of protein-DNA binding sites
    • Y. Mandel-Gutfreund, and H. Margalit, "Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites," Nucleic Acids Research 26 (1998) 2306-2312
    • (1998) Nucleic Acids Research , vol.26 , pp. 2306-2312
    • Mandel-Gutfreund, Y.1    Margalit, H.2
  • 8
    • 13744259639 scopus 로고    scopus 로고
    • Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential
    • Z.J, Liu, F.L. Mao, J.T. Guo, B. Yan, P. Wang, Y.X. Qu, and Y. Xu, "Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential," Nucleic Acids Research 33 (2005) 546-558
    • (2005) Nucleic Acids Research , vol.33 , pp. 546-558
    • Liu, Z.J.1    Mao, F.L.2    Guo, J.T.3    Yan, B.4    Wang, P.5    Qu, Y.X.6    Xu, Y.7
  • 10
    • 0033120215 scopus 로고    scopus 로고
    • Structure-based prediction of DNA target sites by regulatory proteins
    • H. Kono, and A. Sarai, "Structure-based prediction of DNA target sites by regulatory proteins," Proteins-Structure Function and Genetics 35 (1999) 114-131.
    • (1999) Proteins-Structure Function and Genetics , vol.35 , pp. 114-131
    • Kono, H.1    Sarai, A.2
  • 11
    • 0035221367 scopus 로고    scopus 로고
    • B.A. Mandel-Gutfreund Y, Margalit H, A structure-based approach for prediction of protein binding sites in gene upstream regions, Pac Symp Biocomput (2001) 139-50
    • B.A. Mandel-Gutfreund Y, Margalit H, "A structure-based approach for prediction of protein binding sites in gene upstream regions," Pac Symp Biocomput (2001) 139-50
  • 12
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    • C.C. Zheng D, Hobman JL, Minchin SD., Identification of the CRP regulon using in vitro and in vivo transcriptional profiling, Nucleic Acids Research 32 (2004) 5874-93
    • C.C. Zheng D, Hobman JL, Minchin SD., "Identification of the CRP regulon using in vitro and in vivo transcriptional profiling," Nucleic Acids Research 32 (2004) 5874-93


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