Toward optimal target placement for neural prosthetic devices

Journal of Neurophysiology

Volumn 100, Issue 6, 2008, Pages 3445-3457

  Cunningham, John P ^a   Yu, Byron M ^a,b,c   Gilja, Vikash ^a   Ryu, Stephen I ^b   Shenoy, Krishna V ^a,b  

^a Stanford University   (United States)

^b STANFORD UNIVERSITY   (United States)

^c UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ANIMAL EXPERIMENT; ARTICLE; CONTROLLED STUDY; MATHEMATICAL ANALYSIS; MATHEMATICAL COMPUTING; NERVE CELL; NONHUMAN; PRIORITY JOURNAL; PROSTHESIS; SIMULATION; TASK PERFORMANCE;

ACTION POTENTIALS; ALGORITHMS; ANIMALS; COMPUTER SIMULATION; ELECTRODES, IMPLANTED; HAPLORHINI; MAN-MACHINE SYSTEMS; MODELS, NEUROLOGICAL; NEURONS; PHOTIC STIMULATION; PROSTHESIS IMPLANTATION; PSYCHOMOTOR PERFORMANCE;

EID: 57449093181     PISSN: 00223077     EISSN: 15221598     Source Type: Journal    
DOI: 10.1152/jn.90833.2008     Document Type: Article

References (58)

1. Barbieri R, Quirk MC, Frank LM, Wilson MA, Brown EN. Construction and analysis of non-Poisson stimulus-response models of neural spiking activity. J Neurosci Methods 105: 25-37, 2001.
2. Boggs PT, Tolle JW. Sequential quadratic programming. Acta Num 4: 1-52, 1996.
3. Boyd SP, Vandenberghe L. Convex Optimization. Cambridge, UK: Cambridge Univ. Press., 2004.
4. Brockwell AE, Rojas AL, Kass RE. Recursive Bayesian decoding of motor cortical signals by particle filtering. J Neurophysiol 91: 1899-1907, 2004.
5. Brown EN, Frank LM, Tang D, Quirk MC, Wilson MA. A statistical paradigm for neural spike train decoding applied to position prediction from the ensemble firing patterns of rat hippocampal place cells. J Neurosci 18: 7411-7425, 1998.
6. Carmena JM, Lebedev MA, Crist RE, O'Doherty JE, Santucci DM, Dimitrov DF, Patil PG, Henriquez CS, Nicolelis MAL. Learning to control a brain-machine interface for reaching and grasping by primates. PLoS Biol 1: 193-208, 2003.
7. Chestek, C, Gilja, V, Nuyujukian, P, Ryu, S, Kier, R, Solzbacher, F, Harrison, R, Shenoy, KV. HermesC: Rf wireless low-power neural recording system for freely behaving primates. Proc IEEE ISCAS 1752-1755, 2008.
8. Chestek CA, Batista AP, Santhanam G, Yu BM, Afshar A, Cunningham JP, Gilja V, Ryu SI, Churchland MM, Shenoy KV. Single-neuron stability during repeated reaching in macaque premotor cortex. J Neurosci 27: 10742-10750, 2007.
9. Churchland MM, Santhanam G, Shenoy KV. Preparatory activity in premotor and motor cortex reflects the speed of the upcoming reach. J Neurophysiol 96: 3130-3146, 2006a.
10. Churchland MM, Yu BM, Ryu SI, Santhanam G, Shenoy KV. Neural variability in premotor cortex provides a signature of motor preparation. J Neurosci 26: 3697-3712, 2006b.
11. Cover TM, Thomas JA. Elements of Information Theory. New York: Wiley, 1991.
12. Crammond DJ, Kalaska JF. Prior information in motor and premotor cortex: activity during the delay period and effect on pre-movement activity. J Neurophysiol 84: 986-1005, 2000.
13. Cunningham, JP, Yu, BM, Shenoy, KV. Optimal target placement for neural communication prostheses. Proc of the 28th Annual Intl Conf of the IEEE, New York. EMBS 2006, p. 2912-2915.
14. Cunningham, JP, Yu, BM, Shenoy, KV, Sahani, M. Inferring neural firing rates from spike trains using Gaussian processes. In: Advances in Neural Information Processing Systems 20, edited by Platt J, Koller D, Singer Y, and Roweis S. Cambridge, MA: MIT Press, 2008.
15. Duda, RO, Hart, PE, Stork, DG. Pattern Classification. New York: Wiley, 2001.
16. Fu QG, Suarez JI, Ebner TJ. Neuronal specification of direction and distance during reaching movements in the superior precentral premotor area and primary motor cortex of monkeys. J Neurophysiol 70: 2097-2116, 1993.
17. Georgopoulos AP, Kalaska JF, Caminiti R, Massey JT. On the relations between the direction of two-dimensional arm movements and cell discharge in primate motor cortex. J Neurosci 2: 1527-1537, 1982.
18. Georgopoulos AP, Schwartz AB, Kettner RE. Neuronal population coding of movement direction. Science 233: 1416-1419, 1986.
19. Gockenbach MS, Kearsley AJ. Optimal signal sets for non-Gaussian detectors. SIAM J Optimization 9: 316-326, 1999.
20. Hatsopoulos N, Joshi J, O'Leary JG. Decoding continuous and discrete motor behaviors using motor and premotor cortical ensembles. J Neurophysiol 92: 1165-1174, 2004.
21. Hochberg LR, Serruya MD, Friehs GM, Mukand JA, Saleh M, Caplan AH, Branner A, Chen D, Penn RD, Donoghue JP. Neuronal ensemble control of prosthetic devices by a human with tetraplegia. Nature 442: 164-171, 2006.
22. Johnson DH, Gruner CM, Baggerly K, Seshagiri C. Information-theoretic analysis of neural coding. J Comput Neurosci 10: 47-69, 2001.
23. Johnson DH, Orsak GC. Relation of signal set choice to the performance of optimal non-Gaussian detectors. IEEE Trans Commun 41: 1319-1328, 1993.
24. Kaufman CG, Ventura V, Kass RE. Spline-based non-parametric regression for periodic functions and its application to directional tuning of neurons. Stat Med 24: 2255-2265, 2005.
25. Kemere C, Shenoy KV, Meng TH. Model-based neural decoding of reaching movements: a maximum likelihood approach. IEEE Trans Biomed Eng 51: 925-932, 2004.
26. Kennedy PR, Bakay RAE. Restoration of neural output from a paralyzed patient by a direct brain connection. Neuroreport 9: 1707-1711, 1998.
27. Kennedy PR, Bakay RAE, Moore MM, Adams K, Goldwaithe J. Direct control of a computer from the human central nervous system. IEEE Trans Neural Syst Rehabil Eng 8: 198-202, 2000.
28. Lebedev MA, Nicolelis MAL. Brain-machine interfaces: past, present, and future. Trends Neurosci 29: 536-546, 2006.
29. Messier J, Kalaska JF. Covariation of primate dorsal premotor cell activity with direction and amplitude during a memorized-delay reaching task. J Neurophysiol 84: 152-165, 2000.
30. Moran DW, Schwartz AB. Motor cortical activity during drawing movements: Population representation during spiral tracing. J Neurophysiol 82: 2693-2704, 1999a.
31. Moran DW, Schwartz AB. Motor cortical representation of speed and direction during reaching. J Neurophysiol 82: 2676-2692, 1999b.
32. Musallam S, Corneil BD, Greger B, Scherberger H, Andersen RA. Cognitive control signals for neural prosthetics. Science 305: 258-262, 2004.
33. Papoulis, A, Pillai, SU. Probability, Random Variables, and Stochastic Processes. Boston, MA: McGraw Hill, 2002.
34. Polikov VS, Tresco PA, Reichert WM. Response of brain tissue to chronically implanted neural electrodes. J Neurosci Methods 148: 1-18, 2005.
35. Proakis JG, Salehi M. Communication Systems Engineering. Englewood Cliffs, NJ: Prentice-Hall, 1994.
36. Riehle A, Requin J. Monkey primary motor and premotor cortex: single-cell activity related to prior information about direction and extent of an intended movement. J Neurophysiol 61: 534-549, 1989.
37. Sahani, M. Latent Variable Models for Neural Data Analysis (PhD thesis). Pasadena, CA: California Institute of Technology, 1999.
38. Santhanam G, Linderman MD, Gilja V, Afshar A, Ryu SI, Meng TH, Shenoy KV. HermesB: a continuous neural recording system for freely behaving primates. IEEE Trans Bio Med Eng 17: 609-618, 2007.
39. Santhanam G, Ryu SI, Yu BM, Afshar A, Shenoy KV. A high-performance brain- computer interface. Nature 442: 195-198, 2006.
40. Santhanam, G, Sahani, M, Ryu, SI, Shenoy, KV. An extensible infrastructure for fully automated spike sorting during online experiments. Proc 26th Annual Conf IEEE, San Francisco, CA. EMBS 2004, p. 4380-4384.
41. Schwartz AB. Cortical neural prosthetics. Annu Rev Neurosci, 27: 487-507, 2004.
42. Serruya MD, Hatsopoulos NG, Paninski L, Fellows MR, Donoghue JP. Instant neural control of a movement signal. Nature 416: 141-142, 2002.
43. Shenoy KV, Meeker D, Cao S, Kureshi SA, Pesaran B, Mitra P, Buneo CA, Batista AP, Burdick JW, Andersen RA. Neural prosthetic control signals from plan activity. Neuroreport 14: 591-596, 2003.
44. Smith A, Brown E. Estimating a state-space model from point process observations. Neural Comput 15: 965-991, 2003.
45. Srinivasan L, Eden UT, Mitter SJ, Brown EN. General purpose filter design for neural prosthetic systems. J Neurophysiol 98: 2456-2475, 2007.
46. Taylor DM, Tillery SIH, Schwartz AB. Direct cortical control of 3D neuroprosthetic devices. Science 296: 1829-1832, 2002.
47. Truccolo W, Eden UT, Fellows MR, Donoghue JP, Brown EN. A point process framework for relating neural spiking activity to spiking history, neural ensemble, and extrinsic covariate effects. J Neurophysiol 93: 1074-1089, 2004.
48. Velliste, M, Perel, S, Spalding, M, Whitford, A, and Schwartz, A. Cortical control of a prosthetic arm for self-feeding. Nature 453; 1098-1101, 2008.
49. Verdu S. Asymptotic error probability of binary hypothesis testing for Poisson point-process observations. IEEE Trans Inform Theory 32: 113-115, 1986.
50. Wahnoun R, He J, Tillery SIH. Selection and parameterization of cortical neurons for neuroprosthetic control. J Neural Eng 3: 162-171, 2006.
51. Wolpaw JR, McFarland DJ. Control of a two-dimensional movement signal by a noninvasive brain-computer interface in humans. Proc Natl Acad Sci USA 101: 17849-17854, 2004.
52. Wu W, Black MJ, Mumford D, Gao Y, Bienenstock E, Donoghue JP. Modeling and decoding motor cortical activity using a switching Kalman filter. IEEE Trans Biomed Eng 51: 933-942, 2004.
53. Wu W, Gao Y, Bienenstock E, Donoghue JP, Black MJ. Bayesian population decoding of motor cortical activity using a Kalman filter. Neural Comput 18: 80-118, 2006.
54. Yu BM, Kemere C, Santhanam G, Afshar A, Ryu SI, Meng TH, Sahani M, Shenoy KV. Mixture of trajectory models for neural decoding of goal-directed movements. J Neurophysiol 97: 3763-3780, 2007.
55. Yu, BM, Ryu, SI, Santhanam, G, Churchland, MM, Shenoy, KV. Improving neural prosthetic system performance by combining plan and perimovement activity. Proc 26th Annual Conf IEEE, San Francisco, CA. EMBS 2004, p. 4516-4519.
56. Zar J. Biostatistical Analysis. Englewood Cliffs, NJ: Prentice Hall, 1999.
57. Zhang K, Ginzburg I, McNaughton BL, Sejnowski TJ. Interpreting neuronal population activity by reconstruction: unified framework with application to hippocampal place cells. J Neurophysiol 79: 1017-1044, 1998.
58. Zumsteg ZS, Kemere C, O'Driscoll S, Santhanam G, Ahmed RE, Shenoy KV, Meng TH. Power feasibility of implantable digital spike sorting circuits for neural prosthetic systems. IEEE Trans Neural Syst Rehabil Eng 13: 272-279, 2005.