Development of an efficient fungal DNA extraction method to be used in random amplified polymorphic DNA-PCR analysis to differentiate cyclopiazonic acid mold producers

Journal of Food Protection

Volumn 71, Issue 12, 2008, Pages 2497-2503

  Sánchez, Beatriz ^a   Rodríguez, Mar ^a   Casado, Eva M ^a   Martín, Alberto ^a   Córdoba, Juan J ^a  

^a UNIVERSITY OF EXTREMADURA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 57449092085     PISSN: 0362028X     EISSN: None     Source Type: Journal    
DOI: 10.4315/0362-028X-71.12.2497     Document Type: Article

References (25)

1. Andreassen, C. N., F. B. Sorensen, J. Overgaard, and J. Alsner. 2004. Optimisation and validation of methods to assess single nucleotide polymorphisms (SNPs) in archival histological material. Radiother. Oncol. 72:351-356.
2. Aranda, E., M. Rodríguez, M. J. Benito, M. A. Asensio, and J. J. Córdoba. 2002. Molecular cloning of verrucosidin-producing Penicillium polonicum genes by differential screening to obtain a DNA probe. Int. J. Food Microbiol. 76:55-61.
3. Bir, N., A. Paliwal, K. Muralidhar, P. Reddy, and P. U. Sarma. 1995. A rapid method for the isolation of genomic DNA from DNA from Aspergillus fumigatus. Prep. Biochem. 25:171-181.
4. Chen, S. C., C. L. Halliday, and W. Meyer. 2002. A review of nucleic acid-based diagnostic tests for systemic mycoses with and emphasis on polymerase chain reaction based assays. Med. Mycol. 40:333-357.
5. Délye, C., and M. F. Corio-Costet. 1998. Rapid isolation of both double-stranded RNA and PCR-suitable DNA from the obligate biotrophic phytopathogenic fungus Uncinula necator using a commercially available reagent. J. Virol. Methods 74:149-153.
6. Dice, L. R. 1945. Measures of the amount of ecologic association between species. Ecology 26:297-302.
7. Dupont, J., S. Magnin, A. Marti, and M. Brousse. 1999. Molecular tools for identification of Penicillium starter cultures used in the food industry. Int. J. Food Microbiol. 49:109-118.
8. Filion, M., M. St-Arnaud, and S. H. Jabaji-Hare. 2003. Direct quantification of fungal DNA from soil substrate using real-time PCR. J. Microbiol. Methods 53:67-76.
9. Fredricks, D. N., C. Smith, and A. Meier. 2005. Comparison of six DNA extraction methods for recovery of fungal DNA as assessed by quantitative PCR. J. Clin. Microbiol. 43:5122-5128.
10. Geisen, R., M. D. Cantor, T. K. Hansen, W. H. Holzapfel, and M. Jakobsen. 2001. Characterization of Penicillium roqueforti strains used is cheese starter cultures by RAPD typing. Int. J. Food Microbiol. 65:153-191.
11. Guo, J., F. Schnieder, K. A. Abd-Elsalam, and J. A. Verreet. 2005. Rapid and efficient extraction of genomic DNA from different phytopathogenic fungi using DNAzol reagent. Biotechnol Lett. 27:3-6.
12. Haugland, R. A., N. Brinkman, and S. J. Vesper. 2002. Evaluatinn of rapid DNA extraction methods for the quantitative detection of fungi using real-time PCR analysis. J. Microbiol. Methods 50:319-323.
13. Jin, J., Y. K. Lee, and B. L. Wickes. 2004. Simple chemical extraction method for DNA isolation from Aspergillus fumigatus and other Aspergillus species. J. Clin. Microbiol. 42:4293-4296.
14. Kalia, A., A. Rattan, and P. Chopra. 1999. A method for extraction of high-quality and high-quantity genomic DNA generally applicable to pathogenic bacteria. Anal. Biochem. 275:1-5.
15. Karakousis, A., L. Tan, D. Ellis, H. Alexiou, and P. J. Wormald. 2006. An assessment of the efficiency of fungal DNA extraction methods or maximizing the detection of medically important fungi using PCR. J. Microbiol. Methods 65:38-48.
16. Loeffler, J., K. Schmidt, H. Hebart, U. Schumacher, and H. Einsele. 2002. Automated extraction of genomic DNA from medically important yeast species and filamentous fungi by using the MagNA pure LC system. J. Clin. Microbiol. 40:2240-2243.
17. Löffler, J., H. Hebart, U. Schumacher, H. Reitze, and H. Einsele. 1997. Comparison of different methods or extraction of DNA of fungal pathogens from cultures and blood. J. Clin. Microbiol. 35:3311-3312.
18. Lund, E. A. B. Nielsen, and P. Skouboe. 2003. Distribution of Penicillium commune isolates in cheese dairies mapped using secondary metabolite profiles, morphotypes, RAPD and AFLP fingerprinting. Food Microbiol. 20:725-734.
19. Manian, S., S. Sreenivasaprasad, and P. R. Mills. 2001. DNA extraction method for PCR in mycorrhizal fungi. Lett. Appl. Microbiol. 33:307-310.
20. Martín, A., M. Jurado, M. Rodríguez, F. Núñez, and J. J. Córdoba. 2004. Characterization of molds from dry-cured meat products and their metabolites by micellar electrokinetic capillary electrophoresis and random amplified polymorphic DNA PCR. J. Food Prot. 67:2234-2239.
21. Núñez, F. M. M. Rodríguez, M. E. Bermúdez, J. J. Córdoba, and M. A. Asensio. 1996. Composition and toxigenic potential of the mould population on dry-cured Iberian ham. Int. J. Food Microbiol. 32:185-197.
22. Ross, I. K. 1995. Non-grinding method of DNA isolation from human pathogenic filamentous fungi using xanthogenates. BioTechniques 18:828-830.
23. Saitoh, K., K. Togashi, A. Tsutomu, and T. Teraoka. 2006. A simple method or a mini-preparation of fungal DNA. J. Gen. Plant Pathol. 72:348-350.
24. Sosa, M. J., J. J. Córdoba, C. Díaz, M. Rodríguez, E. Bermudez, M. A. Asensio, and F. Nuñez. 2002. Production of cyclopiazonic acid by Penicillium commune isolated from dry-cured ham on a meat extract-based substrate. J. Food Prot. 65:988-992.
25. Williams, R. H., E. Ward, and H. A. McCartney. 2001. Methods for integrated air sampling and DNA analysis for detection of air-borne fungal spores. Appl. Environ. Monit. 4:377-382.