Bacteria associated with benthic diatoms from Lake Constance: Phylogeny and influences on diatom growth and secretion of extracellular polymeric substances

Applied and Environmental Microbiology

Volumn 74, Issue 24, 2008, Pages 7740-7749

  Bruckner, Christian G ^a   Bahulikar, Rahul ^a,b   Rahalkar, Monali ^a,b   Schink, Bernhard ^a   Kroth, Peter G ^a  

^a UNIVERSITY OF KONSTANZ   (Germany)

^b UNIVERSITY OF BREMEN   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC PHYSICS; ATOMS; BIOFILMS; BIOFILTERS; BIOPOLYMERS; CARBOHYDRATES; ENZYME ACTIVITY; GROWTH (MATERIALS); LAKES; MONOMERS; POLYMERS; POLYSACCHARIDES; STRAIN;

ALPHAPROTEOBACTERIA; BACTERIAL COMMUNITIES; BACTERIAL DEGRADATIONS; BACTERIAL STRAINS; BENTHIC DIATOMS; BETAPROTEOBACTERIA; CO CULTURES; CO SUBSTRATES; DIATOM CULTURES; EPILITHIC BIOFILMS; EXTRACELLULAR; EXTRACELLULAR POLYMERIC SUBSTANCES; EXTRACELLULAR POLYSACCHARIDES; FRESHWATER EPILITHIC BIOFILMS; GAMMAPROTEOBACTERIA; GERMANY; LAKE CONSTANCE; MICROENVIRONMENT; MONOMER COMPOSITIONS; PHYLOGENETIC ANALYSES; PROTEOBACTERIA;

BACTERIOLOGY;

POLYSACCHARIDE;

ADAPTATION; BENTHOS; BIOFILM; CARBOHYDRATE; COMMUNITY COMPOSITION; COMMUNITY ECOLOGY; DIATOM; DOMINANCE; GROWTH RESPONSE; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; PHYLOGENETICS; PHYLOGENY; POLYSACCHARIDE;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTEROIDETES; BENTHOS; BETAPROTEOBACTERIA; BIOFILM; DIATOM; GAMMAPROTEOBACTERIA; GERMANY; LAKE; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROTEOBACTERIA; UNINDEXED SEQUENCE;

BACTERIA; BIODIVERSITY; DIATOMS; DNA, BACTERIAL; DNA, RIBOSOMAL; FRESH WATER; GENES, RRNA; GERMANY; PHYLOGENY; POLYSACCHARIDES; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

BODENSEE; CENTRAL EUROPE; EURASIA; EUROPE;

ALGAE; ALPHAPROTEOBACTERIA; BACILLARIOPHYTA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BETAPROTEOBACTERIA; CYMBELLA MICROCEPHALA; GAMMAPROTEOBACTERIA; PROTEOBACTERIA; VERRUCOMICROBIA;

EID: 57449087986     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01399-08     Document Type: Article

References (51)

1. Ács, É. 1998. Short-term fluctuations in the benthic algal compositions on artificial substratum in a large river (river Danube, near Budapest). Verh. Int. Verein. Limnol. 26:1653-1656.
2. Albersheim, P., D. J. Nevis, P. D. English, and A. Karr. 1967. A method for the analysis of sugars in plant cell-wall polysaccharides by gas-liquid chromatography. Carbohydr. Res. 5:340.
3. Allgaier, M., H. Uphoff, A. Felske, and I. Wagner-Döbler. 2003. Aerobic anoxygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl. Environ. Microbiol. 69:5051-5059.
4. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
5. Bahulikar, R. A., and P. G. Kroth. 2007. Localization of EPS components secreted by freshwater diatoms using differential staining with fluorophoreconjugated lectins and other fluorochromes. Eur. J. Phycol. 42:199-208.
6. Baker, K. H., and D. S. Herson. 1978. Interactions between the diatom Thalassiosira pseudonana and an associated pseudomonad in a mariculture system. Appl. Environ. Microbiol. 35:791-796.
7. Battin, T. J., L. A. Kaplan, J. D. Newbold, X. Cheng, and C. Hansen. 2003. Effects of current velocity on the nascent architecture of stream microbial biofilms. Appl. Environ. Microbiol. 69:5443-5452.
8. Bell, W. H. 1984. Bacterial adaptation to low-nutrient conditions as studied with algal extracellular products. Microb. Ecol. 10:217-230.
9. Bhaskar, P. V., H.-P. Grossart, N. B. Bhosle, and M. Simon. 2005. Production of macroaggregates from dissolved exopolymeric substances (EPS) of bacterial and diatom origin. FEMS Microb. Ecol. 53:255-264.
10. Bowman, J. P., S. A. McCammon, M. V. Brown, D. S. Nichols, and T. A. McMeekin. 1997. Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl. Environ. Microbiol. 63:3068-3078.
11. Brachvogel, T., B. Schweitzer, and M. Simon. 2001. Dynamics and bacterial colonization of microaggregates in a large mesotrophic lake. Aquat. Microb. Ecol. 26:23-35.
12. Chiovitti, A., A. Bacic, J. Burke, and R. Wetherbee. 2003. Heterogeneous xylose-rich glycans are associated with extracellular glycoproteins from the biofouling diatom Craspedosauros australis (Bacillariophyceae). Eur. J. Phycol. 38:351-360.
13. Doebereiner, J., and F. O. Pedrosa. 1992. Nitrogen-fixing bacteria in nonleguminous crop plants. Springer-Verlag, Madison, WI.
14. Doménech, A., J. F. Fernández-Garayzábal, J. A. García, M. T. Cutuli, M. Blanco, A. Gibello, M. A. Moreno, and L. Domínguez. 1999. Association of Pseudomonas anguilliseptica infection with "winter disease" in sea bream, Sparus aurata L. J. Fish Dis. 22:69-71.
15. Dubois, M., K. A. Gilles, J. K. Hamilton, P. A. Rebers, and F. Smith. 1956. Colorimetric method for determination of sugars and related substances. Anal. Chem. 28:350-3556.
16. Edwards, U., T. Rogall, H. Blöcker, M. Emde, and E. C. Böttger. 1989. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17:7843-7853.
17. Fukami, K., T. Nishijima, and Y. Ishida. 1997. Stimulative and inhibitory effects of bacteria on the growth of microalgae. Hydrobiologia 358:185-191.
18. Gawne, B., Y. Wang, K. Hoagland, and M. R. Gretz. 1998. Role of bacteria and bacterial exopolymer in the attachment of Achnanthes longipes. Biofouling 13:137-156.
19. Giroldo, D., A. A. H. Vieira, and B. S. Paulsen. 2003. Relative increase of deoxy sugars during microbial degradation of an extracellular polysaccharide released by a tropical freshwater Thalassiosira sp. (Bacillariophyceae). J. Phycol. 39:1109-1115.
20. Grossart, H.-P., and M. Simon. 2007. Interactions of planktonic algae and bacteria: effects on algal growth and organic matter dynamics. Aquat. Microb. Ecol. 47:163-176.
21. Grossart, H.-P., G. Czub, and M. Simon. 2006. Algae-bacteria interactions and their effects on aggregation and organic matter flux in the sea. Environ. Microbiol. 8:1074-1084.
22. Grossart, H.-P., F. Levold, M. Allgaier, M. Simon, and T. Brinkhoff. 2005. Marine diatom species harbour distinct bacterial communities. Environ. Microbiol. 7:860-873.
23. Grossart, H.-P. 1999. Interactions between marine bacteria and axenic diatoms (Cylindrotheca fusiformis, Nitschia laevis and Thalassiosira weissflogii) incubated under various conditions in the lab. Aquat. Microb. Ecol. 19:1-11.
24. Grossart, H.-P., M. Simon, and B. E. Logan. 1997. Formation of macroscopic organic aggregates (lake snow) in a large lake: the significance of transparent exopolymer particles, phytoplankton, and zooplankton. Limnol. Oceanogr. 42:1651-1659.
25. Hahn, M. W. 2003. Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones. Appl. Environ. Microbiol. 69:5248-5254.
26. Haynes, K., T. A. Hofman, C. J. Smith, A. S. Ball, G. J. C. Underwood, and A. M. Osborn. 2007. Diatom-derived carbohydrates as factors affecting bacterial community composition in estuarine sediments. Appl. Environ. Microbiol. 73:6112-6124.
27. Jahnel, J. B., P. Ilieva, and F. H. Frimmel. 1998. HPAE-PAD - a sensitive method for the determination of carbohydrates. Fresenius J. Anal. Chem. 360:827-829.
28. 2. Biochem. Physiol. Pflanzen. 167:194-204.
29. Kirchman, D. L. 2002. The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microb. Ecol. 39:91-100.
30. Knoll, S., W. Zwisler, and M. Simon. 2001. Bacterial colonization of early stages of limnetic diatom aggregates. Aquat. Microb. Ecol. 25:141-150.
31. Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Forster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. Konig, T. Liss, R. Lussmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K.-H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
32. Makk, J., E. Acs, K. Marialigeti, and G. Kovacs. 2003. Investigations on the Danube gravel-biofilm diatom-associated bacterial communities. Biologia (Bratisl.) 58:729-742.
33. Medlin, L., I. Jung, R. A. Bahulikar, K. Mendgen, P. G. Kroth, and W. H. C. F. Kooistra. 2008. Evolution of the diatoms. VI. Assessment of the new genera in the araphids using molecular data. Nova Hedwig. Beih. 133:81-100.
34. Murray, M. G., and W. F. Thompson. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325.
35. Murray, R. E., K. E. Cooksey, and J. C. Priscu. 1986. Stimulation of bacterial DNA synthesis by algal exudates in attached algal-bacterial consortia. Appl. Environ. Microbiol. 52:1177-1182.
36. Pinhassi, J., F. Azam, J. Hempälä, R. A. Long, J. Martinez, U. L. Zweifel, and A. Hagström. 1999. Coupling between bacterioplankton species composition, population dynamics and organic matter degradation. Aquat. Microb. Ecol. 17:13-26.
37. Riemann, L., and A. Winding. 2001. Community dynamics of free-living and particle-associated bacterial assemblages during a freshwater phytoplankton bloom. Microb. Ecol. 42:274-285.
38. Riemann, L., G. F. Steward, and F. Azam. 2000. Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl. Environ. Microbiol. 66:578-587.
39. Schäfer, H., B. Abbas, H. Witte, and G. Muyzer. 2002. Genetic diversity of "satellite" bacteria present in cultures of marine diatoms. FEMS Microbiol. Ecol. 42:25-35.
40. Schweitzer, B., I. Huber, R. Amann, W. Ludwig, and M. Simon. 2001. α- and β-Proteobacteria control the consumption and release of amino acids on lake snow aggregates. Appl. Environ. Microbiol. 67:632-645.
41. Shewan, J. M., and T. A. Mc Meekin. 1983. Taxonomy (and ecology) of Flavobacterium and related genera. Annu. Rev. Microbiol. 37:233-252.
42. Simon, M., H.-P. Grossart, B. Schweitzer, and H. Ploug. 2002. Microbial ecology of organic aggregates in aquatic ecosystems. Aquat. Microb. Ecol. 28:175-211.
43. Staats, N., B. De Winder, L. J. Stal, and L. R. Mur. 1999. Isolation and characterisation of extracellular polysaccharides from the epipelic diatoms Cylindrotheca closterium and Navicula salinarum. Eur. J. Phycol. 34:161-169.
44. Taylor, I. S., D. M. Paterson, and A. Mehlert. 1999. The quantitative vari-ability and monosaccharide composition of sediment carbohydrates associated with intertidal diatom assemblages. Biogeochemistry 45:303-327.
45. Underwood, G. J. C., M. Boulcott, C. A. Raines, and K. Waldron. 2004. Environmental effects on exopolymer production by marine benthic diatoms: dynamics, changes in composition and pathways of production. J. Phycol. 40:293-304.
46. Ward, D. M., M. J. Ferris, S. C. Nold, and M. M. Bateson. 1998. A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiol. Mol. Biol. Rev. 62:1353-1370.
47. Watanabe, M. M. 2005. Freshwater culture media, p. 429-538. In R. A. Anderson (ed.), Algal culturing techniques. Elsevier Academic Press, Philadelphia, PA.
48. Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697-703.
49. Weiss, P., B. Schweitzer, R. Amann, and M. Simon. 1996. Identification in situ and dynamics of bacteria on limnetic organic aggregates (lake snow). Appl. Environ. Microbiol. 62:1998-2005.
50. Widdel, F., G. W. Kohring, and F. Mayer. 1983. Studies in dissimilatory sulfate-reducing bacteria that decompose fatty acids. Characterisation of filamentous gliding Desulfonema limicola gen. nov. sp. nov., and Desulfonema magnum sp. nov. Arch. Microbiol. 134:167-172.
51. Wigglesworth-Cooksey, B., and K. Cooksey. 2005. Use of fluorophore-conjugated lectins to study cell-cell interactions in model marine biofilms. Appl. Environ. Microbiol. 71:428-435.