-
2
-
-
23844520968
-
Steps toward accurate reconstruction of phylogenies from gene-order data
-
TandyWarnow
-
Moret BME, Tang J, Wang L-S, TandyWarnow (2002) Steps toward accurate reconstruction of phylogenies from gene-order data. J Comput Syst Sci 65: 508-525.
-
(2002)
J Comput Syst Sci
, vol.65
, pp. 508-525
-
-
Moret, B.M.E.1
Tang, J.2
Wang, L.-S.3
-
3
-
-
0002880994
-
Chloroplast and mitochondrial genome evolution in land plants
-
Herrmann R, ed, New York: Springer Verlag. pp
-
Palmer JD (1992) Chloroplast and mitochondrial genome evolution in land plants. In: Herrmann R, ed. Cell Organelles. New York: Springer Verlag. pp 99-133.
-
(1992)
Cell Organelles
, pp. 99-133
-
-
Palmer, J.D.1
-
4
-
-
0026598577
-
Chloroplast DNA Evidence on the Ancient Evolutionary Split in Vascular Land Plants
-
Raubeson LA, Jansen RK (1992) Chloroplast DNA Evidence on the Ancient Evolutionary Split in Vascular Land Plants. Science 255: 1697-1699.
-
(1992)
Science
, vol.255
, pp. 1697-1699
-
-
Raubeson, L.A.1
Jansen, R.K.2
-
5
-
-
0028005619
-
Chloroplast DNA Systematics: A Review of Methods and Data Analysis
-
Olmstead RG, Palmer JD (1994) Chloroplast DNA Systematics: A Review of Methods and Data Analysis. Am J Bot 81: 1205-1224.
-
(1994)
Am J Bot
, vol.81
, pp. 1205-1224
-
-
Olmstead, R.G.1
Palmer, J.D.2
-
6
-
-
0032770572
-
Gene Order Breakpoint Evidence in Animal Mitochondrial Phylogeny
-
Blanchette M, Kunisawa T, Sankoff D (1999) Gene Order Breakpoint Evidence in Animal Mitochondrial Phylogeny. J Mol Evol 49: 193-203.
-
(1999)
J Mol Evol
, vol.49
, pp. 193-203
-
-
Blanchette, M.1
Kunisawa, T.2
Sankoff, D.3
-
7
-
-
19544374490
-
Genome Rearrangement Distances and Gene Order Phylogeny in {gamma}-Proteobacteria
-
Belda E, Moya A, Silva FJ (2005) Genome Rearrangement Distances and Gene Order Phylogeny in {gamma}-Proteobacteria. Mol Biol Evol 22: 1456-1467.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1456-1467
-
-
Belda, E.1
Moya, A.2
Silva, F.J.3
-
8
-
-
33646551799
-
Oceanographic Basis of the Global Surface Distribution of Prochlorococcus Ecotypes
-
Bouman HA, Ulloa O, Scanlan DJ, Zwirglmaier K, Li WKW, et al. (2006) Oceanographic Basis of the Global Surface Distribution of Prochlorococcus Ecotypes. Science 312: 918-921.
-
(2006)
Science
, vol.312
, pp. 918-921
-
-
Bouman, H.A.1
Ulloa, O.2
Scanlan, D.J.3
Zwirglmaier, K.4
Li, W.K.W.5
-
9
-
-
33645216333
-
Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients
-
Johnson ZI, Zinser ER, Coe A, McNulty NP, Woodward EMS, et al. (2006) Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients. Science 311: 1737-1740.
-
(2006)
Science
, vol.311
, pp. 1737-1740
-
-
Johnson, Z.I.1
Zinser, E.R.2
Coe, A.3
McNulty, N.P.4
Woodward, E.M.S.5
-
10
-
-
0036200876
-
Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
-
Rocap G, Distel DL, Waterbury JB, Chisholm SW (2002) Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences. Appl Environ Microbiol 68: 1180-1191.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1180-1191
-
-
Rocap, G.1
Distel, D.L.2
Waterbury, J.B.3
Chisholm, S.W.4
-
11
-
-
37749041470
-
Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus
-
Kettler GC, Martiny AC, Huang K, Zucker J, Coleman ML, et al. (2007) Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus. PLoS Genet 3: e231.
-
(2007)
PLoS Genet
, vol.3
-
-
Kettler, G.C.1
Martiny, A.C.2
Huang, K.3
Zucker, J.4
Coleman, M.L.5
-
12
-
-
0032482462
-
Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes
-
Moore LR, Rocap G, Chisholm SW (1998) Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393: 464-467.
-
(1998)
Nature
, vol.393
, pp. 464-467
-
-
Moore, L.R.1
Rocap, G.2
Chisholm, S.W.3
-
13
-
-
40549120596
-
The RAST Server: Rapid Annotations using Subsystems Technology
-
Aziz R, Bartels D, Best A, DeJongh M, Disz T, et al. (2008) The RAST Server: Rapid Annotations using Subsystems Technology. BMC Genomics 9: 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.1
Bartels, D.2
Best, A.3
DeJongh, M.4
Disz, T.5
-
14
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
15
-
-
23844520968
-
Steps toward accurate reconstruction of phylogenies from gene-order data
-
Moret BME, Tang J, Wang LS, Warnow T (2002) Steps toward accurate reconstruction of phylogenies from gene-order data. J Comput Syst Sci 65: 508-525.
-
(2002)
J Comput Syst Sci
, vol.65
, pp. 508-525
-
-
Moret, B.M.E.1
Tang, J.2
Wang, L.S.3
Warnow, T.4
-
16
-
-
0036943052
-
Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle
-
Desper R, Gascuel O (2002) Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle. J Comput Biol 9: 687-705.
-
(2002)
J Comput Biol
, vol.9
, pp. 687-705
-
-
Desper, R.1
Gascuel, O.2
-
17
-
-
34547781750
-
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol Biol Evol 24: 1596-1599
-
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol Biol Evol 24: 1596-1599.
-
-
-
-
18
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package
-
Felsenstein J (1989) PHYLIP - Phylogeny Inference Package Cladistics 5: 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
19
-
-
33646928341
-
Discordance of Species Trees with Their Most Likely Gene Trees
-
Degnan JH, Rosenberg NA (2006) Discordance of Species Trees with Their Most Likely Gene Trees. PLoS Genet 2: e68.
-
(2006)
PLoS Genet
, vol.2
-
-
Degnan, J.H.1
Rosenberg, N.A.2
-
21
-
-
21644441587
-
Do orthologous gene phylogenies really support tree-thinking?
-
Bapteste E, Susko E, Leigh J, MacLeod D, Charlebois RL, et al. (2005) Do orthologous gene phylogenies really support tree-thinking? BMC Evol Biol 5: 33.
-
(2005)
BMC Evol Biol
, vol.5
, pp. 33
-
-
Bapteste, E.1
Susko, E.2
Leigh, J.3
MacLeod, D.4
Charlebois, R.L.5
-
22
-
-
33644700003
-
Toward Automatic Reconstruction of a Highly Resolved Tree of Life
-
Ciccarelli FD, Doerks T, von Mering C, Creevey CJ, Snel B, et al. (2006) Toward Automatic Reconstruction of a Highly Resolved Tree of Life. Science 311: 1283-1287.
-
(2006)
Science
, vol.311
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
von Mering, C.3
Creevey, C.J.4
Snel, B.5
-
23
-
-
0032900532
-
Genome phylogeny based on gene content
-
Snel B, Bork P, Huynen MA (1999) Genome phylogeny based on gene content. Nat Genet 21: 108-110.
-
(1999)
Nat Genet
, vol.21
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
24
-
-
0036075758
-
Utilization of different nitrogen sources by the marine cyanobacteria, Prochlorococcus and Synechococcus
-
Moore LR, Post AF, Rocap G, Chisholm SW (2002) Utilization of different nitrogen sources by the marine cyanobacteria, Prochlorococcus and Synechococcus. Limnol Oceanogr 47: 989-996.
-
(2002)
Limnol Oceanogr
, vol.47
, pp. 989-996
-
-
Moore, L.R.1
Post, A.F.2
Rocap, G.3
Chisholm, S.W.4
-
25
-
-
33747621641
-
Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation
-
Martiny AC, Coleman ML, Chisholm SW (2006) Phosphate acquisition genes in Prochlorococcus ecotypes: Evidence for genome-wide adaptation. Proc Natl Acad Sci U S A 103: 12552-12557.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12552-12557
-
-
Martiny, A.C.1
Coleman, M.L.2
Chisholm, S.W.3
-
26
-
-
14844313275
-
Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree
-
Gadagkar SR, Rosenberg MS, Kumar S (2005) Inferring species phylogenies from multiple genes: Concatenated sequence tree versus consensus gene tree. J Exp Zoolog B Mol Dev Evol 304B: 64-74.
-
(2005)
J Exp Zoolog B Mol Dev E
, vol.304 B
, pp. 64-74
-
-
Gadagkar, S.R.1
Rosenberg, M.S.2
Kumar, S.3
-
27
-
-
33750279466
-
Distance-Based Genome Rearrangement Phylogeny
-
Wang L-S, Warnow T, Moret B, Jansen R, Raubeson L (2006) Distance-Based Genome Rearrangement Phylogeny. J Mol Evol 63: 473-483.
-
(2006)
J Mol Evol
, vol.63
, pp. 473-483
-
-
Wang, L.-S.1
Warnow, T.2
Moret, B.3
Jansen, R.4
Raubeson, L.5
|