-
1
-
-
33750238153
-
Stratus not altocumulus: A new view of the yeast protein interaction network
-
Batada,N.N. et al. (2006) Stratus not altocumulus: A new view of the yeast protein interaction network. PLoS Biol., 4, e317.
-
(2006)
PLoS Biol
, vol.4
-
-
Batada, N.N.1
-
2
-
-
34250361148
-
Still stratus not altocumulus: Further evidence against the date/party hub distinction
-
Batada,N.N. et al. (2007) Still stratus not altocumulus: Further evidence against the date/party hub distinction. PLoS Biol., 5 e154.
-
(2007)
PLoS Biol
, vol.5
-
-
Batada, N.N.1
-
4
-
-
46249128543
-
Identifying functional modules in protein-protein interaction networks: An integrated exact approach
-
Dittrich,M.T. et al. (2008) Identifying functional modules in protein-protein interaction networks: An integrated exact approach. Bioinformatics, 24, i223-i231.
-
(2008)
Bioinformatics
, vol.24
-
-
Dittrich, M.T.1
-
5
-
-
38549146894
-
The Pfam protein families database
-
Finn,R.D. et al. (2008) The Pfam protein families database. Nucleic Acids Res., 36, D281-D288.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Finn, R.D.1
-
6
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin,A.C. et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature, 415, 141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
-
7
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin,A.C. et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature, 440, 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
-
8
-
-
0141561891
-
Integrating 'omic' information: A bridge between genomics and systems biology
-
Ge,H. et al. (2003) Integrating 'omic' information: A bridge between genomics and systems biology. Trends Genet., 19, 551-560.
-
(2003)
Trends Genet
, vol.19
, pp. 551-560
-
-
Ge, H.1
-
9
-
-
84984996500
-
The Gene Ontology project in 2008
-
Gene Ontology Consortium
-
Gene Ontology Consortium (2008) The Gene Ontology project in 2008. Nucleic Acids Res., 36, D440-D444.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
-
10
-
-
2342485098
-
Gene duplication and hierarchical modularity in intracellular interaction networks
-
Hallinan,J. (2004) Gene duplication and hierarchical modularity in intracellular interaction networks. Biosystems, 74, 51-62.
-
(2004)
Biosystems
, vol.74
, pp. 51-62
-
-
Hallinan, J.1
-
11
-
-
0033518234
-
From molecular to modular cell biology
-
Hartwell,L.H. et al. (1999) From molecular to modular cell biology. Nature, 402, C47-C52.
-
(1999)
Nature
, vol.402
-
-
Hartwell, L.H.1
-
12
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho,Y. et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature, 415 180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
-
13
-
-
34547844147
-
Systematic discovery of functional modules and context-specific functional annotation of human genome
-
Huang,Y. et al. (2007) Systematic discovery of functional modules and context-specific functional annotation of human genome. Bioinformatics, 23, i222-i229.
-
(2007)
Bioinformatics
, vol.23
-
-
Huang, Y.1
-
14
-
-
34247554981
-
From functional genomics to systems biology
-
Ivakhno,S. (2007) From functional genomics to systems biology. FEBS J., 274, 2439-2448.
-
(2007)
FEBS J
, vol.274
, pp. 2439-2448
-
-
Ivakhno, S.1
-
15
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa,M. et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res., 36, D480-D484.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
-
16
-
-
25444448797
-
Spontaneous evolution of modularity and network motifs
-
Kashtan,N. and Alon,U. (2005) Spontaneous evolution of modularity and network motifs. Proc. Natl Acad. Sci. USA, 102, 13773-13778.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 13773-13778
-
-
Kashtan, N.1
Alon, U.2
-
17
-
-
34247464637
-
Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
-
Komurov,K. and White,M. (2007) Revealing static and dynamic modular architecture of the eukaryotic protein interaction network. Mol. Syst. Biol., 3, 110.
-
(2007)
Mol. Syst. Biol
, vol.3
, pp. 110
-
-
Komurov, K.1
White, M.2
-
18
-
-
33846056843
-
Entrez Gene: Gene-centered information at NCBI
-
Maglott,D. et al. (2007) Entrez Gene: Gene-centered information at NCBI. Nucleic Acids Res., 35, D26-D31.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Maglott, D.1
-
19
-
-
33846116032
-
New developments in the InterPro database
-
Mulder,N.J. et al. (2007) New developments in the InterPro database. Nucleic Acids Res., 35, D224-D228.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Mulder, N.J.1
-
20
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz,E. et al. (2002) Hierarchical organization of modularity in metabolic networks. Science, 297, 1551-1555.
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
-
21
-
-
13144283679
-
Modular analysis of the transcriptional regulatory network of E. coli
-
Resendis-Antonio,O. et al. (2005) Modular analysis of the transcriptional regulatory network of E. coli. Trends Genet., 21, 16-20.
-
(2005)
Trends Genet
, vol.21
, pp. 16-20
-
-
Resendis-Antonio, O.1
-
22
-
-
0037417817
-
Modular organization of cellular networks
-
Rives,A.W. and Galitski,T. (2003) Modular organization of cellular networks. Proc. Natl Acad. Sci. USA, 100, 1128-1133.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 1128-1133
-
-
Rives, A.W.1
Galitski, T.2
-
23
-
-
33745020639
-
A metabolic network in the evolutionary context: Multiscale structure and modularity
-
Spirin,V. et al. (2006) A metabolic network in the evolutionary context: Multiscale structure and modularity. Proc. Natl Acad. Sci. USA, 103, 8774-8779.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 8774-8779
-
-
Spirin, V.1
-
24
-
-
34548838884
-
Modular organization in the reductive evolution of protein-protein interaction networks
-
Tamames,J. et al. (2007) Modular organization in the reductive evolution of protein-protein interaction networks. Genome Biol., 8, R94.
-
(2007)
Genome Biol
, vol.8
-
-
Tamames, J.1
-
25
-
-
33744822763
-
Yeast protein interactome topology provides framework for coordinated-functionality
-
Valente,A.X. and Cusick,M.E. (2006) Yeast protein interactome topology provides framework for coordinated-functionality. Nucleic Acids Res. 34, 2812-2819.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2812-2819
-
-
Valente, A.X.1
Cusick, M.E.2
-
26
-
-
33845631171
-
Genome design' model and multicellular complexity: Golden middle
-
Vinogradov,A.E. (2006) 'Genome design' model and multicellular complexity: Golden middle. Nucleic Acids Res., 34, 5906-5914.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5906-5914
-
-
Vinogradov, A.E.1
-
27
-
-
33846086800
-
recent developments in the integration and prediction of protein interactions
-
STRING 7
-
von Mering,C. et al. (2007) STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Res., 35, D358-D362.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
von Mering, C.1
-
28
-
-
34347329333
-
In search of the biological significance of modular structures in protein networks
-
Wang,Z. and Zhang,J. (2007) In search of the biological significance of modular structures in protein networks. PLoS Comput. Biol., 3 e107.
-
(2007)
PLoS Comput. Biol
, vol.3
-
-
Wang, Z.1
Zhang, J.2
-
29
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts,D.J. and Strogatz,S.H. (1998) Collective dynamics of 'small-world' networks. Nature, 393, 440-442.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
30
-
-
33748673577
-
Hierarchical modularity of nested bow-ties in metabolic networks
-
Zhao,J. et al. (2006) Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinformatics, 7, 386.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 386
-
-
Zhao, J.1
|