-
1
-
-
24644470505
-
Ontological analysis of gene expression data: Current tools, limitations, and open problems
-
2435250 15994189 10.1093/bioinformatics/bti565
-
Khatri P Draghici S Ontological analysis of gene expression data: current tools, limitations, and open problems Bioinformatics 2005, 21(18):3587-3595. 2435250 15994189 10.1093/bioinformatics/bti565
-
(2005)
Bioinformatics
, vol.21
, Issue.18
, pp. 3587-3595
-
-
Khatri, P.1
Draghici, S.2
-
2
-
-
0038054341
-
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
10.1038/ng1180 12808457
-
Mootha VK Lindgren CM Eriksson KF Subramanian A Sihag S Lehar J Puigserver P Carlsson E Ridderstrale M Laurila E Houstis N Daly MJ Patterson N Mesirov JP Golub TR Tamayo P Spiegelman B Lander ES Hirschhorn JN Altshuler D Groop LC PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes Nat Genet 2003, 34(3):267-273. 10.1038/ng1180 12808457
-
(2003)
Nat Genet
, vol.34
, Issue.3
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
Sihag, S.5
Lehar, J.6
Puigserver, P.7
Carlsson, E.8
Ridderstrale, M.9
Laurila, E.10
Houstis, N.11
Daly, M.J.12
Patterson, N.13
Mesirov, J.P.14
Golub, T.R.15
Tamayo, P.16
Spiegelman, B.17
Lander, E.S.18
Hirschhorn, J.N.19
Altshuler, D.20
Groop, L.C.21
more..
-
3
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
1239896 16199517 10.1073/pnas.0506580102
-
Subramanian A Tamayo P Mootha VK Mukherjee S Ebert BL Gillette MA Paulovich A Pomeroy SL Golub TR Lander ES Mesirov JP Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles Proc Natl Acad Sci USA 2005, 102(43):15545-15550. 1239896 16199517 10.1073/pnas.0506580102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
4
-
-
34547483895
-
Improving gene set analysis of microarray data by SAM-GS
-
1931607 17612399 10.1186/1471-2105-8-242
-
Dinu I Potter JD Mueller T Liu Q Adewale AJ Jhangri GS Einecke G Famulski KS Halloran P Yasui Y Improving gene set analysis of microarray data by SAM-GS BMC Bioinformatics 2007, 8:242. 1931607 17612399 10.1186/ 1471-2105-8-242
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 242
-
-
Dinu, I.1
Potter, J.D.2
Mueller, T.3
Liu, Q.4
Adewale, A.J.5
Jhangri, G.S.6
Einecke, G.7
Famulski, K.S.8
Halloran, P.9
Yasui, Y.10
-
5
-
-
26444608611
-
Discovering statistically significant pathways in expression profiling studies
-
13544 13549 1200092 16174746 10.1073/pnas.0506577102
-
Tian L Greenberg SA Kong SW Altschuler J Kohane IS Park PJ Discovering statistically significant pathways in expression profiling studies Proc Natl Acad Sci USA 2005, 102(38):13544-13549. 1200092 16174746 10.1073/ pnas.0506577102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, Issue.38
, pp. 13544-13549
-
-
Tian, L.1
Greenberg, S.A.2
Kong, S.W.3
Altschuler, J.4
Kohane, I.S.5
Park, P.J.6
-
7
-
-
38349182215
-
Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis
-
10.1093/bioinformatics/btm583 18042553
-
Nettleton D Recknor J Reecy JM Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis Bioinformatics 2008, 24(2):192-201. 10.1093/ bioinformatics/btm583 18042553
-
(2008)
Bioinformatics
, vol.24
, Issue.2
, pp. 192-201
-
-
Nettleton, D.1
Recknor, J.2
Reecy, J.M.3
-
8
-
-
35348890683
-
On testing the significance of sets of genes
-
10.1214/07-AOAS101
-
Efron B Tibshirani R On testing the significance of sets of genes Annals of Applied Statistics 2007, 1:107-129. 10.1214/07-AOAS101
-
(2007)
Annals of Applied Statistics
, vol.1
, pp. 107-129
-
-
Efron, B.1
Tibshirani, R.2
-
9
-
-
1542399989
-
FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes
-
10.1093/bioinformatics/btg455 14990455
-
Al-Shahrour F Diaz-Uriarte R Dopazo J FatiGO: A web tool for finding significant associations of Gene Ontology terms with groups of genes Bioinformatics 2004, 20(4):578-580. 10.1093/bioinformatics/btg455 14990455
-
(2004)
Bioinformatics
, vol.20
, Issue.4
, pp. 578-580
-
-
Al-Shahrour, F.1
Diaz-Uriarte, R.2
Dopazo, J.3
-
10
-
-
21444442035
-
Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information
-
10.1093/bioinformatics/bti457 15840702
-
Al-Shahrour F Diaz-Uriarte R Dopazo J Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information Bioinformatics 2005, 21(13):2988-2993. 10.1093/bioinformatics/bti457 15840702
-
(2005)
Bioinformatics
, vol.21
, Issue.13
, pp. 2988-2993
-
-
Al-Shahrour, F.1
Diaz-Uriarte, R.2
Dopazo, J.3
-
11
-
-
25444502609
-
PAGE: Parametric analysis of gene set enrichment
-
1183189 15941488 10.1186/1471-2105-6-144
-
Kim SY Volsky DJ PAGE: Parametric analysis of gene set enrichment BMC Bioinformatics 2005, 6:144. 1183189 15941488 10.1186/1471-2105-6-144
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 144
-
-
Kim, S.Y.1
Volsky, D.J.2
-
12
-
-
0345832338
-
A global test for groups of genes: Testing association with a clinical outcome
-
10.1093/bioinformatics/btg382 14693814
-
Goeman JJ Geer van de SA de Kort F van Houwelingen HC A global test for groups of genes: Testing association with a clinical outcome Bioinformatics 2004, 20(1):93-99. 10.1093/bioinformatics/btg382 14693814
-
(2004)
Bioinformatics
, vol.20
, Issue.1
, pp. 93-99
-
-
Goeman, J.J.1
Geer, S.A.2
de Kort, F.3
van Houwelingen, H.C.4
-
13
-
-
18744406044
-
Testing association of a pathway with survival using gene expression data
-
10.1093/bioinformatics/bti267 15657105
-
Goeman JJ Oosting J Cleton-Jansen AM Anninga JK van Houwelingen HC Testing association of a pathway with survival using gene expression data Bioinformatics 2005, 21(9);1950-1957. 10.1093/bioinformatics/bti267 15657105
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1950-1957
-
-
Goeman, J.J.1
Oosting, J.2
Cleton-Jansen, A.M.3
Anninga, J.K.4
van Houwelingen, H.C.5
-
14
-
-
22944444171
-
Testing differential gene expression in functional groups. Goeman's global test versus an ANCOVA approach
-
16113772
-
Mansmann U Meister R Testing differential gene expression in functional groups. Goeman's global test versus an ANCOVA approach Methods Inf Med 2005, 44(3):449-453. 16113772
-
(2005)
Methods Inf Med
, vol.44
, Issue.3
, pp. 449-453
-
-
Mansmann, U.1
Meister, R.2
-
15
-
-
25444472585
-
Pathway level analysis of gene expression using singular value decomposition
-
1261155 16156896 10.1186/1471-2105-6-225
-
Tomfohr J Lu J Kepler TB Pathway level analysis of gene expression using singular value decomposition BMC Bioinformatics 2005, 6:225. 1261155 16156896 10.1186/1471-2105-6-225
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 225
-
-
Tomfohr, J.1
Lu, J.2
Kepler, T.B.3
-
16
-
-
2942549112
-
Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments
-
403636 15050037 10.1186/1471-2105-5-34
-
Breitling R Amtmann A Herzyk P Iterative Group Analysis (iGA): A simple tool to enhance sensitivity and facilitate interpretation of microarray experiments BMC Bioinformatics 2004, 5:34. 403636 15050037 10.1186/ 1471-2105-5-34
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 34
-
-
Breitling, R.1
Amtmann, A.2
Herzyk, P.3
-
17
-
-
16344373908
-
Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression
-
10.1093/bioinformatics/bti149 15550480
-
Ben-Shaul Y Bergman H Soreq H Identifying subtle interrelated changes in functional gene categories using continuous measures of gene expression Bioinformatics 2005, 21(7):1129-1137. 10.1093/bioinformatics/bti149 15550480
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 1129-1137
-
-
Ben-Shaul, Y.1
Bergman, H.2
Soreq, H.3
-
18
-
-
52649121428
-
Testing gene set enrichment for subset of genes: Sub-GSE
-
2543030 18764941 10.1186/1471-2105-9-362
-
Yan X Sun F Testing gene set enrichment for subset of genes: Sub-GSE BMC bioinformatics 2008, 9:362. 2543030 18764941 10.1186/1471-2105-9-362
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 362
-
-
Yan, X.1
Sun, F.2
-
19
-
-
29244448340
-
Microarray data analysis: From disarray to consolidation and consensus
-
10.1038/nrg1749 16369572
-
Allison DB Cui X Page GP Sabripour M Microarray data analysis: From disarray to consolidation and consensus Nat Rev Genet 2006, 7(1):55-65. 10.1038/nrg1749 16369572
-
(2006)
Nat Rev Genet
, vol.7
, Issue.1
, pp. 55-65
-
-
Allison, D.B.1
Cui, X.2
Page, G.P.3
Sabripour, M.4
-
20
-
-
34249663294
-
Analyzing gene expression data in terms of gene sets: Methodological issues
-
10.1093/bioinformatics/btm051 17303618
-
Goeman JJ Buhlmann P Analyzing gene expression data in terms of gene sets: Methodological issues Bioinformatics 2007, 23(8):980-987. 10.1093/ bioinformatics/btm051 17303618
-
(2007)
Bioinformatics
, vol.23
, pp. 980-987
-
-
Goeman, J.J.1
Buhlmann, P.2
-
21
-
-
43149116763
-
Gene-set approach for expression pattern analysis
-
10.1093/bib/bbn001 18202032
-
Nam D Kim SY Gene-set approach for expression pattern analysis Brief Bioinform 2008, 9(3):189-197. 10.1093/bib/bbn001 18202032
-
(2008)
Brief Bioinform
, vol.9
, pp. 189-197
-
-
Nam, D.1
Kim, S.Y.2
-
23
-
-
33845412897
-
Pathway and gene-set activation measurement from mRNA expression data: The tissue distribution of human pathways
-
1794557 17044931 10.1186/gb-2006-7-10-r93
-
Levine DM Haynor DR Castle JC Stepaniants SB Pellegrini M Mao M Johnson JM Pathway and gene-set activation measurement from mRNA expression data: The tissue distribution of human pathways Genome Biol 2006, 7(10):R93. 1794557 17044931 10.1186/gb-2006-7-10-r93
-
(2006)
Genome Biol
, vol.7
, Issue.10
-
-
Levine, D.M.1
Haynor, D.R.2
Castle, J.C.3
Stepaniants, S.B.4
Pellegrini, M.5
Mao, M.6
Johnson, J.M.7
-
24
-
-
34547781320
-
DNA microarray technology for the microbiologist: An overview
-
10.1007/s00253-006-0584-2 17043830
-
Ehrenreich A DNA microarray technology for the microbiologist: An overview Appl Microbiol Biotechnol 2006, 73(2):255-273. 10.1007/ s00253-006-0584-2 17043830
-
(2006)
Appl Microbiol Biotechnol
, vol.73
, Issue.2
, pp. 255-273
-
-
Ehrenreich, A.1
-
25
-
-
34249861750
-
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes
-
10.1093/bioinformatics/btl658 17237043
-
Blom EJ Bosman DW van Hijum SA Breitling R Tijsma L Silvis R Roerdink JB Kuipers OP FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes Bioinformatics 2007, 23(9):1161-1163. 10.1093/bioinformatics/btl658 17237043
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1161-1163
-
-
Blom, E.J.1
Bosman, D.W.2
van Hijum, S.A.3
Breitling, R.4
Tijsma, L.5
Silvis, R.6
Roerdink, J.B.7
Kuipers, O.P.8
-
26
-
-
33747822950
-
JProGO: A novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information
-
1538798 16845060 10.1093/nar/gkl329
-
Scheer M Klawonn F Munch R Grote A Hiller K Choi C Koch I Schobert M Hartig E Klages U Jahn D JProGO: A novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information Nucleic Acids Res 2006, 34: Web Server W510-5. 1538798 16845060 10.1093/nar/gkl329
-
(2006)
Nucleic Acids Res
-
-
Scheer, M.1
Klawonn, F.2
Munch, R.3
Grote, A.4
Hiller, K.5
Choi, C.6
Koch, I.7
Schobert, M.8
Hartig, E.9
Klages, U.10
Jahn, D.11
-
27
-
-
0038016749
-
Evidence that acetyl phosphate functions as a global signal during biofilm development
-
10.1046/j.1365-2958.2003.03457.x 12753190
-
Wolfe AJ Chang DE Walker JD Seitz-Partridge JE Vidaurri MD Lange CF Pruss BM Henk MC Larkin JC Conway T Evidence that acetyl phosphate functions as a global signal during biofilm development Mol Microbiol 2003, 48(4):977-988. 10.1046/j.1365-2958.2003.03457.x 12753190
-
(2003)
Mol Microbiol
, vol.48
, Issue.4
, pp. 977-988
-
-
Wolfe, A.J.1
Chang, D.E.2
Walker, J.D.3
Seitz-Partridge, J.E.4
Vidaurri, M.D.5
Lange, C.F.6
Pruss, B.M.7
Henk, M.C.8
Larkin, J.C.9
Conway, T.10
-
28
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
1251668 16214803 10.1093/nar/gki866
-
Overbeek R Begley T Butler RM Choudhuri JV Chuang HY Cohoon M de Crecy-Lagard V Diaz N Disz T Edwards R Fonstein M Frank ED Gerdes S Glass EM Goesmann A Hanson A Iwata-Reuyl D Jensen R Jamshidi N Krause L Kubal M Larsen N Linke B McHardy AC Meyer F Neuweger H Olsen G Olson R Osterman A Portnoy V Pusch GD Rodionov DA Ruckert C Steiner J Stevens R Thiele I Vassieva O Ye Y Zagnitko O Vonstein V The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes Nucleic Acids Res 2005, 33(17):5691-5702. 1251668 16214803 10.1093/nar/ gki866
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.17
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
Cohoon, M.6
de Crecy-Lagard, V.7
Diaz, N.8
Disz, T.9
Edwards, R.10
Fonstein, M.11
Frank, E.D.12
Gerdes, S.13
Glass, E.M.14
Goesmann, A.15
Hanson, A.16
Iwata-Reuyl, D.17
Jensen, R.18
Jamshidi, N.19
Krause, L.20
Kubal, M.21
Larsen, N.22
Linke, B.23
McHardy, A.C.24
Meyer, F.25
Neuweger, H.26
Olsen, G.27
Olson, R.28
Osterman, A.29
Portnoy, V.30
Pusch, G.D.31
Rodionov, D.A.32
Ruckert, C.33
Steiner, J.34
Stevens, R.35
Thiele, I.36
Vassieva, O.37
Ye, Y.38
Zagnitko, O.39
Vonstein, V.40
more..
-
29
-
-
1342325448
-
Transcriptional organization and regulation of the L-idonic acid pathway (GntII system) in Escherichia coli
-
344402 14973046 10.1128/JB.186.5.1388-1397.2004
-
Bausch C Ramsey M Conway T Transcriptional organization and regulation of the L-idonic acid pathway (GntII system) in Escherichia coli J Bacteriol 2004, 186(5):1388-1397. 344402 14973046 10.1128/ JB.186.5.1388-1397.2004
-
(2004)
J Bacteriol
, vol.186
, Issue.5
, pp. 1388-1397
-
-
Bausch, C.1
Ramsey, M.2
Conway, T.3
-
30
-
-
0034060727
-
Salmonella pathogenicity islands: Big virulence in small packages
-
10.1016/S1286-4579(00)00273-2 10742687
-
Marcus SL Brumell JH Pfeifer CG Finlay BB Salmonella pathogenicity islands: Big virulence in small packages Microbes Infect 2000, 2(2):145-156. 10.1016/S1286-4579(00)00273-2 10742687
-
(2000)
Microbes Infect
, vol.2
, Issue.2
, pp. 145-156
-
-
Marcus, S.L.1
Brumell, J.H.2
Pfeifer, C.G.3
Finlay, B.B.4
-
31
-
-
0034046020
-
The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
-
10.1038/75843 10881189
-
Karzai AW Roche ED Sauer RT The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue Nat Struct Biol 2000, 7(6):449-455. 10.1038/75843 10881189
-
(2000)
Nat Struct Biol
, vol.7
, Issue.6
, pp. 449-455
-
-
Karzai, A.W.1
Roche, E.D.2
Sauer, R.T.3
-
32
-
-
1642565815
-
The bacterial Sm-like protein Hfq: A key player in RNA transactions
-
10.1111/j.1365-2958.2003.03935.x 15009882
-
Valentin-Hansen P Eriksen M Udesen C The bacterial Sm-like protein Hfq: a key player in RNA transactions Mol Microbiol 2004, 51(6):1525-1533. 10.1111/j.1365-2958.2003.03935.x 15009882
-
(2004)
Mol Microbiol
, vol.51
, Issue.6
, pp. 1525-1533
-
-
Valentin-Hansen, P.1
Eriksen, M.2
Udesen, C.3
-
33
-
-
0028215784
-
Salmonella typhimurium loci involved in survival within macrophages
-
186369 8168923
-
Baumler AJ Kusters JG Stojiljkovic I Heffron F Salmonella typhimurium loci involved in survival within macrophages Infect Immun 1994, 62(5):1623-1630. 186369 8168923
-
(1994)
Infect Immun
, vol.62
, Issue.5
, pp. 1623-1630
-
-
Baumler, A.J.1
Kusters, J.G.2
Stojiljkovic, I.3
Heffron, F.4
-
34
-
-
33845713571
-
The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium
-
1810395 17163975 10.1111/j.1365-2958.2006.05489.x
-
Sittka A Pfeiffer V Tedin K Vogel J The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium Mol Microbiol 2007, 63(1):193-217. 1810395 17163975 10.1111/j.1365-2958.2006.05489.x
-
(2007)
Mol Microbiol
, vol.63
, Issue.1
, pp. 193-217
-
-
Sittka, A.1
Pfeiffer, V.2
Tedin, K.3
Vogel, J.4
-
35
-
-
40749120149
-
Coordinate regulation of Salmonella pathogenicity island 1 (SPI1) and SPI4 in Salmonella enterica serovar Typhimurium
-
2258849 18160484 10.1128/IAI.01224-07
-
Main-Hester KL Colpitts KM Thomas GA Fang FC Libby SJ Coordinate regulation of Salmonella pathogenicity island 1 (SPI1) and SPI4 in Salmonella enterica serovar Typhimurium Infect Immun 2008, 763:1024-1035. 2258849 18160484 10.1128/IAI.01224-07
-
(2008)
Infect Immun
, vol.76
, pp. 1024-1035
-
-
Main-Hester, K.L.1
Colpitts, K.M.2
Thomas, G.A.3
Fang, F.C.4
Libby, S.J.5
-
36
-
-
34347374506
-
Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis
-
1913449 17483226 10.1128/JB.00178-07
-
Thijs IM De Keersmaecker SC Fadda A Engelen K Zhao H McClelland M Marchal K Vanderleyden J Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis J Bacteriol 2007, 189(13):4587-4596. 1913449 17483226 10.1128/ JB.00178-07
-
(2007)
J Bacteriol
, vol.189
, Issue.13
, pp. 4587-4596
-
-
Thijs, I.M.1
De Keersmaecker, S.C.2
Fadda, A.3
Engelen, K.4
Zhao, H.5
McClelland, M.6
Marchal, K.7
Vanderleyden, J.8
-
37
-
-
33645765576
-
A Role for the SmpB-SsrA system in Yersinia pseudotuberculosis pathogenesis
-
1358943 16450010 10.1371/journal.ppat.0020006
-
Okan NA Bliska JB Karzai AW A Role for the SmpB-SsrA system in Yersinia pseudotuberculosis pathogenesis PLoS Pathog 2006, 2(1):e6. 1358943 16450010 10.1371/journal.ppat.0020006
-
(2006)
PLoS Pathog
, vol.2
, Issue.1
-
-
Okan, N.A.1
Bliska, J.B.2
Karzai, A.W.3
-
38
-
-
8144229496
-
Simulated annealing of microarray data reduces noise and enables cross-experimental comparisons
-
10.1089/dna.2004.23.695 15585127
-
Wren JD Yao M Langer M Conway T Simulated annealing of microarray data reduces noise and enables cross-experimental comparisons DNA Cell Biol 2004, 23(10):695-700. 10.1089/dna.2004.23.695 15585127
-
(2004)
DNA Cell Biol
, vol.23
, Issue.10
, pp. 695-700
-
-
Wren, J.D.1
Yao, M.2
Langer, M.3
Conway, T.4
-
39
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Database 2238879 18077471
-
Kanehisa M Araki M Goto S Hattori M Hirakawa M Itoh M Katayama T Kawashima S Okuda S Tokimatsu T Yamanishi Y KEGG for linking genomes to life and the environment Nucleic Acids Res 2008, 36: Database D480-4. 2238879 18077471
-
(2008)
Nucleic Acids Res
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
40
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
102409 10592173 10.1093/nar/28.1.27
-
Kanehisa M Goto S KEGG: Kyoto encyclopedia of genes and genomes Nucleic Acids Res 2000, 28(1):27-30. 102409 10592173 10.1093/nar/28.1.27
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
41
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
Database 7 1347464 16381885 10.1093/nar/gkj102
-
Kanehisa M Goto S Hattori M Aoki-Kinoshita KF Itoh M Kawashima S Katayama T Araki M Hirakawa M From genomics to chemical genomics: New developments in KEGG Nucleic Acids Res 2006, 34: Database D354-7. 1347464 16381885 10.1093/nar/gkj102
-
(2006)
Nucleic Acids Res
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
42
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556 10802651
-
Ashburner M Ball CA Blake JA Botstein D Butler H Cherry JM Davis AP Dolinski K Dwight SS Eppig JT Harris MA Hill DP Issel-Tarver L Kasarskis A Lewis S Matese JC Richardson JE Ringwald M Rubin GM Sherlock G Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium Nat Genet 2000, 25(1):25-29. 10.1038/75556 10802651
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
43
-
-
38049007503
-
Multidimensional annotation of the Escherichia coli K-12 genome
-
2190727 17940092 10.1093/nar/gkm740
-
Karp PD Keseler IM Shearer A Latendresse M Krummenacker M Paley SM Paulsen I Collado-Vides J Gama-Castro S Peralta-Gil M Santos-Zavaleta A Penaloza-Spinola MI Bonavides-Martinez C Ingraham J Multidimensional annotation of the Escherichia coli K-12 genome Nucleic Acids Res 2007, 35(22):7577-7590. 2190727 17940092 10.1093/nar/gkm740
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.22
, pp. 7577-7590
-
-
Karp, P.D.1
Keseler, I.M.2
Shearer, A.3
Latendresse, M.4
Krummenacker, M.5
Paley, S.M.6
Paulsen, I.7
Collado-Vides, J.8
Gama-Castro, S.9
Peralta-Gil, M.10
Santos-Zavaleta, A.11
Penaloza-Spinola, M.I.12
Bonavides-Martinez, C.13
Ingraham, J.14
-
44
-
-
33845902772
-
Absolute enrichment: Gene set enrichment analysis for homeostatic systems
-
1702493 17130162 10.1093/nar/gkl766
-
Saxena V Orgill D Kohane I Absolute enrichment: Gene set enrichment analysis for homeostatic systems Nucleic Acids Res 2006, 34(22):e151. 1702493 17130162 10.1093/nar/gkl766
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.22
-
-
Saxena, V.1
Orgill, D.2
Kohane, I.3
-
45
-
-
84886755433
-
-
http://chase.ou.edu/oubcf
-
-
-
-
47
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
18686 10829079 10.1073/pnas.120163297
-
Datsenko KA Wanner BL One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Proc Natl Acad Sci USA 2000, 97(12):6640-6645. 18686 10829079 10.1073/pnas.120163297
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.12
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
48
-
-
0037389937
-
A non-redundant microarray of genes for two related bacteria
-
152813 12655003 10.1093/nar/gkg298
-
Porwollik S Frye J Florea LD Blackmer F McClelland M A non-redundant microarray of genes for two related bacteria Nucleic Acids Res 2003, 31(7):1869-1876. 152813 12655003 10.1093/nar/gkg298
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.7
, pp. 1869-1876
-
-
Porwollik, S.1
Frye, J.2
Florea, L.D.3
Blackmer, F.4
McClelland, M.5
-
49
-
-
30044444274
-
WebArray: An online platform for microarray data analysis
-
1327694 16371165 10.1186/1471-2105-6-306
-
Xia X McClelland M Wang Y WebArray: An online platform for microarray data analysis BMC Bioinformatics 2005, 6:306. 1327694 16371165 10.1186/ 1471-2105-6-306
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 306
-
-
Xia, X.1
McClelland, M.2
Wang, Y.3
-
50
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
99122 11752295 10.1093/nar/30.1.207
-
Edgar R Domrachev M Lash AE Gene Expression Omnibus: NCBI gene expression and hybridization array data repository Nucleic acids research 2002, 30(1):207-210. 99122 11752295 10.1093/nar/30.1.207
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
51
-
-
0026050948
-
The likelihood ratio test for the two-component normal mixture problem: Power and sample size analysis
-
10.2307/2532666 1835889
-
Mendell NR Thode HC Jr Finch SJ The likelihood ratio test for the two-component normal mixture problem: Power and sample size analysis Biometrics 1991, 47(3):1143-1148. 10.2307/2532666 1835889
-
(1991)
Biometrics
, vol.47
, Issue.3
, pp. 1143-1148
-
-
Mendell, N.R.1
Thode Jr., H.C.2
Finch, S.J.3
|