메뉴 건너뛰기




Volumn 159, Issue 9-10, 2008, Pages 602-608

Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing

Author keywords

Bordetella pertussis; Comparative genomic sequencing; DNA microarray; Single nucleotide polymorphisms

Indexed keywords

SPACER DNA;

EID: 56949099870     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2008.08.004     Document Type: Article
Times cited : (23)

References (50)
  • 2
    • 3142663222 scopus 로고    scopus 로고
    • Reference system for characterization of Bordetella pertussis pulsed-field gel electrophoresis profiles
    • Advani A., Donnelly D., and Hallander H. Reference system for characterization of Bordetella pertussis pulsed-field gel electrophoresis profiles. J. Clin. Microbiol. 42 (2004) 2890-2897
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 2890-2897
    • Advani, A.1    Donnelly, D.2    Hallander, H.3
  • 7
    • 33744980249 scopus 로고    scopus 로고
    • Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen
    • Chain P.S., Hu P., Malfatti S.A., Radnedge L., Larimer F., Vergez L.M., Worsham P., Chu M.C., et al. Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen. J. Bacteriol. 188 (2006) 4453-4463
    • (2006) J. Bacteriol. , vol.188 , pp. 4453-4463
    • Chain, P.S.1    Hu, P.2    Malfatti, S.A.3    Radnedge, L.4    Larimer, F.5    Vergez, L.M.6    Worsham, P.7    Chu, M.C.8
  • 8
    • 33744812016 scopus 로고    scopus 로고
    • Recent developments in pertussis
    • Crowcroft N.S., and Pebody R.G. Recent developments in pertussis. Lancet 367 (2006) 1926-1936
    • (2006) Lancet , vol.367 , pp. 1926-1936
    • Crowcroft, N.S.1    Pebody, R.G.2
  • 9
    • 1342325443 scopus 로고    scopus 로고
    • Bordetella species are distinguished by patterns of substantial gene loss and host adaptation
    • Cummings C.A., Brinig M.M., Lepp P.W., van de Pas S., and Relman D.A. Bordetella species are distinguished by patterns of substantial gene loss and host adaptation. J. Bacteriol. 186 (2004) 1484-1492
    • (2004) J. Bacteriol. , vol.186 , pp. 1484-1492
    • Cummings, C.A.1    Brinig, M.M.2    Lepp, P.W.3    van de Pas, S.4    Relman, D.A.5
  • 11
    • 45149107161 scopus 로고    scopus 로고
    • Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica
    • Diavatopoulos D.A., Cummings C.A., Schouls L.M., Brinig M.M., Relman D.A., and Mooi F.R. Bordetella pertussis, the causative agent of whooping cough, evolved from a distinct, human-associated lineage of B. bronchiseptica. PloS Pathog. 1 (2005) e45
    • (2005) PloS Pathog. , vol.1
    • Diavatopoulos, D.A.1    Cummings, C.A.2    Schouls, L.M.3    Brinig, M.M.4    Relman, D.A.5    Mooi, F.R.6
  • 12
    • 33845210741 scopus 로고    scopus 로고
    • Population dynamics of Bordetella pertussis in Finland and Sweden, neighbouring countries with different vaccination histories
    • Elomaa A., Advani A., Donnelly D., Antila M., Mertsola J., He Q., and Hallander H. Population dynamics of Bordetella pertussis in Finland and Sweden, neighbouring countries with different vaccination histories. Vaccine 25 (2007) 918-926
    • (2007) Vaccine , vol.25 , pp. 918-926
    • Elomaa, A.1    Advani, A.2    Donnelly, D.3    Antila, M.4    Mertsola, J.5    He, Q.6    Hallander, H.7
  • 13
    • 30744460678 scopus 로고    scopus 로고
    • Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set
    • Filliol I., Motiwala A.S., Cavatore M., Qi W., Hazbon M.H., Bobadilla del Valle M., Fyfe J., Garcia-Garcia L., et al. Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J. Bacteriol. 188 (2006) 759-772
    • (2006) J. Bacteriol. , vol.188 , pp. 759-772
    • Filliol, I.1    Motiwala, A.S.2    Cavatore, M.3    Qi, W.4    Hazbon, M.H.5    Bobadilla del Valle, M.6    Fyfe, J.7    Garcia-Garcia, L.8
  • 15
    • 0030756396 scopus 로고    scopus 로고
    • Role of the Bordetella pertussis minor fimbrial subunit, FimD, in colonization of the mouse respiratory tract
    • Geuijen C.A., Willems R.J., Bongaerts M., Top J., Gielen H., and Mooi F.R. Role of the Bordetella pertussis minor fimbrial subunit, FimD, in colonization of the mouse respiratory tract. Infect. Immun. 65 (1997) 4222-4228
    • (1997) Infect. Immun. , vol.65 , pp. 4222-4228
    • Geuijen, C.A.1    Willems, R.J.2    Bongaerts, M.3    Top, J.4    Gielen, H.5    Mooi, F.R.6
  • 16
    • 27444442408 scopus 로고    scopus 로고
    • Are vaccine programs and isolate polymorphism linked to pertussis re-emergence?
    • Godfroid F., Denoel P., and Poolman J. Are vaccine programs and isolate polymorphism linked to pertussis re-emergence?. Expert Rev. Vaccines 4 (2005) 1533-1543
    • (2005) Expert Rev. Vaccines , vol.4 , pp. 1533-1543
    • Godfroid, F.1    Denoel, P.2    Poolman, J.3
  • 17
    • 0028070464 scopus 로고
    • Mutations in the Bordetella pertussis bvgS gene that confer altered expression of the fhaB gene in Escherichia coli
    • Goyard S., Bellalou J., Mireau H., and Ullmann A. Mutations in the Bordetella pertussis bvgS gene that confer altered expression of the fhaB gene in Escherichia coli. J. Bacteriol. 176 (1994) 5163-5166
    • (1994) J. Bacteriol. , vol.176 , pp. 5163-5166
    • Goyard, S.1    Bellalou, J.2    Mireau, H.3    Ullmann, A.4
  • 18
    • 12244289618 scopus 로고    scopus 로고
    • Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: resolution of genetic relationships among closely related microbial strains
    • Gutacker M.M., Smoot J.C., Migliaccio C.A., Ricklefs S.M., Hua S., Cousins D.V., Graviss E.A., Shashkina E., et al. Genome-wide analysis of synonymous single nucleotide polymorphisms in Mycobacterium tuberculosis complex organisms: resolution of genetic relationships among closely related microbial strains. Genetics 162 (2002) 1533-1543
    • (2002) Genetics , vol.162 , pp. 1533-1543
    • Gutacker, M.M.1    Smoot, J.C.2    Migliaccio, C.A.3    Ricklefs, S.M.4    Hua, S.5    Cousins, D.V.6    Graviss, E.A.7    Shashkina, E.8
  • 19
    • 33846170107 scopus 로고    scopus 로고
    • The control of pertussis - 2007 and beyond
    • Halperin S.A. The control of pertussis - 2007 and beyond. N. Engl. J. Med. 356 (2007) 110-113
    • (2007) N. Engl. J. Med. , vol.356 , pp. 110-113
    • Halperin, S.A.1
  • 20
    • 0036151276 scopus 로고    scopus 로고
    • Changes in predominance and diversity of genomic subtypes of Bordetella pertussis isolated in the United States, 1935 to 1999
    • Hardwick T.H., Cassiday P., Weyant R.S., Bisgard K.M., and Sanden G.N. Changes in predominance and diversity of genomic subtypes of Bordetella pertussis isolated in the United States, 1935 to 1999. Emerg. Infect. Dis. 8 (2002) 44-49
    • (2002) Emerg. Infect. Dis. , vol.8 , pp. 44-49
    • Hardwick, T.H.1    Cassiday, P.2    Weyant, R.S.3    Bisgard, K.M.4    Sanden, G.N.5
  • 21
    • 1542409116 scopus 로고    scopus 로고
    • Hairpin primers for simplified single-nucleotide polymorphism analysis of Mycobacterium tuberculosis and other organisms
    • Hazbon M.H., and Alland D. Hairpin primers for simplified single-nucleotide polymorphism analysis of Mycobacterium tuberculosis and other organisms. J. Clin. Microbiol. 42 (2004) 1236-1242
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 1236-1242
    • Hazbon, M.H.1    Alland, D.2
  • 22
    • 0029150005 scopus 로고
    • Binding of FimD on Bordetella pertussis to very late antigen-5 on monocytes activates complement receptor type 3 via protein tyrosine kinases
    • Hazenbos W.L., van den Berg B.M., Geuijen C.W., Mooi F.R., and van Furth R. Binding of FimD on Bordetella pertussis to very late antigen-5 on monocytes activates complement receptor type 3 via protein tyrosine kinases. J. Immunol. 155 (1995) 3972-3978
    • (1995) J. Immunol. , vol.155 , pp. 3972-3978
    • Hazenbos, W.L.1    van den Berg, B.M.2    Geuijen, C.W.3    Mooi, F.R.4    van Furth, R.5
  • 24
    • 36148979374 scopus 로고    scopus 로고
    • An evaluation of comparative genome sequencing (CGS) by comparing two previously-sequenced bacterial genomes
    • Herring C.D., and Palsson B.O. An evaluation of comparative genome sequencing (CGS) by comparing two previously-sequenced bacterial genomes. BMC Genomics 8 (2007) 274
    • (2007) BMC Genomics , vol.8 , pp. 274
    • Herring, C.D.1    Palsson, B.O.2
  • 27
    • 17444421538 scopus 로고    scopus 로고
    • Molecular pathogenesis, epidemiology, and clinical manifestations of respiratory infections due to Bordetella pertussis and other Bordetella subspecies
    • Mattoo S., and Cherry J.D. Molecular pathogenesis, epidemiology, and clinical manifestations of respiratory infections due to Bordetella pertussis and other Bordetella subspecies. Clin. Microbiol. Rev. 18 (2005) 326-382
    • (2005) Clin. Microbiol. Rev. , vol.18 , pp. 326-382
    • Mattoo, S.1    Cherry, J.D.2
  • 28
    • 14544299392 scopus 로고    scopus 로고
    • The BvgAS signal transduction system regulates biofilm development in Bordetella
    • Mishra M., Parise G., Jackson K.D., Wozniak D.J., and Deora R. The BvgAS signal transduction system regulates biofilm development in Bordetella. J. Bacteriol. 187 (2005) 1474-1484
    • (2005) J. Bacteriol. , vol.187 , pp. 1474-1484
    • Mishra, M.1    Parise, G.2    Jackson, K.D.3    Wozniak, D.J.4    Deora, R.5
  • 30
    • 0034901452 scopus 로고    scopus 로고
    • Adaptation of Bordetella pertussis to vaccination: a cause for its reemergence?
    • Mooi F.R., van Loo I.H., and King A.J. Adaptation of Bordetella pertussis to vaccination: a cause for its reemergence?. Emerg. Infect. Dis 7 (2001) 526-528
    • (2001) Emerg. Infect. Dis , vol.7 , pp. 526-528
    • Mooi, F.R.1    van Loo, I.H.2    King, A.J.3
  • 31
    • 0033022538 scopus 로고    scopus 로고
    • Variation in the Bordetella pertussis virulence factors pertussis toxin and pertactin in vaccine strains and clinical isolates in Finland
    • Mooi F.R., He Q., van Oirschot H., and Mertsola J. Variation in the Bordetella pertussis virulence factors pertussis toxin and pertactin in vaccine strains and clinical isolates in Finland. Infect. Immun. 67 (1999) 3133-3134
    • (1999) Infect. Immun. , vol.67 , pp. 3133-3134
    • Mooi, F.R.1    He, Q.2    van Oirschot, H.3    Mertsola, J.4
  • 32
    • 0022448649 scopus 로고
    • Genetic diversity and relationships in populations of Bordetella spp
    • Musser J.M., Hewlett E.L., Peppler M.S., and Selander R.K. Genetic diversity and relationships in populations of Bordetella spp. J. Bacteriol. 166 (1986) 230-237
    • (1986) J. Bacteriol. , vol.166 , pp. 230-237
    • Musser, J.M.1    Hewlett, E.L.2    Peppler, M.S.3    Selander, R.K.4
  • 33
    • 0043122919 scopus 로고    scopus 로고
    • SIFT: predicting amino acid changes that affect protein function
    • Ng P.C., and Henikoff S. SIFT: predicting amino acid changes that affect protein function. Nucleic Acids Res. 31 (2003) 3812-3814
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3812-3814
    • Ng, P.C.1    Henikoff, S.2
  • 34
    • 33750353461 scopus 로고    scopus 로고
    • Predicting the effects of amino acid substitutions on protein function
    • Ng P.C., and Henikoff S. Predicting the effects of amino acid substitutions on protein function. Annu. Rev. Genomics Hum. Genet. 7 (2006) 61-80
    • (2006) Annu. Rev. Genomics Hum. Genet. , vol.7 , pp. 61-80
    • Ng, P.C.1    Henikoff, S.2
  • 35
    • 33645539749 scopus 로고    scopus 로고
    • Frequent recombination and low level of clonality within Salmonella enterica subspecies I
    • Octavia S., and Lan R. Frequent recombination and low level of clonality within Salmonella enterica subspecies I. Microbiology 152 (2006) 1099-1108
    • (2006) Microbiology , vol.152 , pp. 1099-1108
    • Octavia, S.1    Lan, R.2
  • 36
    • 2342635806 scopus 로고    scopus 로고
    • Sequence variation and conservation in virulence-related genes of Bordetella pertussis isolates from the UK
    • Packard E.R., Parton R., Coote J.G., and Fry N.K. Sequence variation and conservation in virulence-related genes of Bordetella pertussis isolates from the UK. J. Med. Microbiol. 53 (2004) 355-365
    • (2004) J. Med. Microbiol. , vol.53 , pp. 355-365
    • Packard, E.R.1    Parton, R.2    Coote, J.G.3    Fry, N.K.4
  • 37
    • 0042355274 scopus 로고    scopus 로고
    • Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
    • Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N., Harris D.E., Holden M.T., Churcher C.M., et al. Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica. Nat. Genet. 35 (2003) 32-40
    • (2003) Nat. Genet. , vol.35 , pp. 32-40
    • Parkhill, J.1    Sebaihia, M.2    Preston, A.3    Murphy, L.D.4    Thomson, N.5    Harris, D.E.6    Holden, M.T.7    Churcher, C.M.8
  • 42
    • 3843099223 scopus 로고    scopus 로고
    • Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s
    • Schouls L.M., van der Heide H.G., Vauterin L., Vauterin P., and Mooi F.R. Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s. J. Bacteriol. 186 (2004) 5496-5505
    • (2004) J. Bacteriol. , vol.186 , pp. 5496-5505
    • Schouls, L.M.1    van der Heide, H.G.2    Vauterin, L.3    Vauterin, P.4    Mooi, F.R.5
  • 45
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov R.L., Koonin E.V., and Lipman D.J. A genomic perspective on protein families. Science 278 (1997) 631-637
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 46
    • 0030668087 scopus 로고    scopus 로고
    • Molecular evolution and host adaptation of Bordetella spp.: phylogenetic analysis using multilocus enzyme electrophoresis and typing with three insertion sequences
    • van der Zee A., Mooi F., Van Embden J., and Musser J. Molecular evolution and host adaptation of Bordetella spp.: phylogenetic analysis using multilocus enzyme electrophoresis and typing with three insertion sequences. J. Bacteriol. 179 (1997) 6609-6617
    • (1997) J. Bacteriol. , vol.179 , pp. 6609-6617
    • van der Zee, A.1    Mooi, F.2    Van Embden, J.3    Musser, J.4
  • 47
    • 0036263393 scopus 로고    scopus 로고
    • Multilocus sequence typing of Bordetella pertussis based on surface protein genes
    • van Loo I.H., Heuvelman K.J., King A.J., and Mooi F.R. Multilocus sequence typing of Bordetella pertussis based on surface protein genes. J. Clin. Microbiol. 40 (2002) 1994-2001
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 1994-2001
    • van Loo, I.H.1    Heuvelman, K.J.2    King, A.J.3    Mooi, F.R.4
  • 49
    • 0033921902 scopus 로고    scopus 로고
    • Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes
    • Zhang J. Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes. J. Mol. Evol. 50 (2000) 56-68
    • (2000) J. Mol. Evol. , vol.50 , pp. 56-68
    • Zhang, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.