-
1
-
-
0000312004
-
Protein Sequencing by Tandem Mass Spectrometry
-
Hunt D.F., Yates III J.R., Shabanonowitz J., Winston S., and Hauer C.R. Protein Sequencing by Tandem Mass Spectrometry. Proc. Natl. Acad. Sci. U.S.A. 83 (1986) 6233-6237
-
(1986)
Proc. Natl. Acad. Sci. U.S.A.
, vol.83
, pp. 6233-6237
-
-
Hunt, D.F.1
Yates III, J.R.2
Shabanonowitz, J.3
Winston, S.4
Hauer, C.R.5
-
2
-
-
0023804303
-
Contributions of Mass Spectrometry to Peptide and Protein Structure
-
Biemann K. Contributions of Mass Spectrometry to Peptide and Protein Structure. Biomed. Environ. Mass Spectrom. 16 (1988) 99-111
-
(1988)
Biomed. Environ. Mass Spectrom.
, vol.16
, pp. 99-111
-
-
Biemann, K.1
-
3
-
-
21844457685
-
Fragmentation Pathways of Protonated Peptides
-
Paizs B., and Suhai S. Fragmentation Pathways of Protonated Peptides. Mass Spectrom. Rev. 24 (2004) 508-548
-
(2004)
Mass Spectrom. Rev.
, vol.24
, pp. 508-548
-
-
Paizs, B.1
Suhai, S.2
-
4
-
-
4444335470
-
The abc's and the xyz's of Peptide Sequencing
-
Steen H., and Mann M. The abc's and the xyz's of Peptide Sequencing. Nat. Rev. Mol. Cell. Biol. 5 (2004) 699-711
-
(2004)
Nat. Rev. Mol. Cell. Biol.
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
5
-
-
35848929694
-
Analysis and Validation of Proteomic Data Generated by Tandem Mass Spectrometry
-
Nesvizhskii A.E., Vitek O., and Aebersold R. Analysis and Validation of Proteomic Data Generated by Tandem Mass Spectrometry. Nat. Methods 4 (2007) 787-797
-
(2007)
Nat. Methods
, vol.4
, pp. 787-797
-
-
Nesvizhskii, A.E.1
Vitek, O.2
Aebersold, R.3
-
6
-
-
84987419408
-
Proposal for a Common Nomenclature for Sequence Ions in Mass Spectra of Peptides
-
11601
-
Roepstorff P., and Fohlmann J. Proposal for a Common Nomenclature for Sequence Ions in Mass Spectra of Peptides. J. Biomed. Mass Spectrom. (1984) 11601
-
(1984)
J. Biomed. Mass Spectrom.
-
-
Roepstorff, P.1
Fohlmann, J.2
-
7
-
-
0023804303
-
Contributions of Mass Spectrometry to Peptide and Protein Structure
-
Biemann K. Contributions of Mass Spectrometry to Peptide and Protein Structure. Biomed. Environ. Mass Spectrom. 16 (1988) 99
-
(1988)
Biomed. Environ. Mass Spectrom.
, vol.16
, pp. 99
-
-
Biemann, K.1
-
8
-
-
0029810698
-
Influence of Peptide Composition, Gas-Phase Basicity and Chemical Modification on Fragmentation Efficiency: Evidence for the Mobile Proton Model
-
Dongré A.R., Jones J.L., Somogyi Á., and Wysocki V.H. Influence of Peptide Composition, Gas-Phase Basicity and Chemical Modification on Fragmentation Efficiency: Evidence for the Mobile Proton Model. J. Am. Chem. Soc. 118 (1996) 8365-8374
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 8365-8374
-
-
Dongré, A.R.1
Jones, J.L.2
Somogyi, Á.3
Wysocki, V.H.4
-
9
-
-
0034501099
-
Mobile and Localized Protons: A Framework for Understanding Peptide Dissociation
-
Wysocki V.H., Tsaprailis G., Smith L.L., and Breci L.A. Mobile and Localized Protons: A Framework for Understanding Peptide Dissociation. J. Mass Spectrom. 35 (2000) 1399-1406
-
(2000)
J. Mass Spectrom.
, vol.35
, pp. 1399-1406
-
-
Wysocki, V.H.1
Tsaprailis, G.2
Smith, L.L.3
Breci, L.A.4
-
12
-
-
0345862097
-
Towards Understanding the Tandem Mass Spectra of Protonated Oligopeptides. 1: Mechanism of Amide Bond Cleavage
-
Paizs B., and Suhai S. Towards Understanding the Tandem Mass Spectra of Protonated Oligopeptides. 1: Mechanism of Amide Bond Cleavage. J. Am. Soc. Mass Spectrom. 15 (2004) 103-113
-
(2004)
J. Am. Soc. Mass Spectrom.
, vol.15
, pp. 103-113
-
-
Paizs, B.1
Suhai, S.2
-
14
-
-
0034516862
-
Dissociation of the Peptide Bond in Protonated Peptides
-
Polce M.J., Ren D., and Wesdemiotis C. Dissociation of the Peptide Bond in Protonated Peptides. J. Mass Spectrom. 35 12 (2000) 1391-1398
-
(2000)
J. Mass Spectrom.
, vol.35
, Issue.12
, pp. 1391-1398
-
-
Polce, M.J.1
Ren, D.2
Wesdemiotis, C.3
-
15
-
-
0027618667
-
The Neutral Products Formed During Backbone Fragmentations of Protonated Peptides in Tandem Mass Spectrometry
-
Cordero M.M., Houser J.J., and Wesdemiotis C. The Neutral Products Formed During Backbone Fragmentations of Protonated Peptides in Tandem Mass Spectrometry. Anal. Chem. 65 (1993) 1594-1601
-
(1993)
Anal. Chem.
, vol.65
, pp. 1594-1601
-
-
Cordero, M.M.1
Houser, J.J.2
Wesdemiotis, C.3
-
16
-
-
0000197230
-
Amide Bond Dissociation in protonated Peptides. Structures of the N-terminal Ionic and Neutral Fragments
-
Nold M.J., Wesdemiotis C., Yalcin T., and Harrison A.G. Amide Bond Dissociation in protonated Peptides. Structures of the N-terminal Ionic and Neutral Fragments. Int. J. Mass Spectrom. Ion Processes 164 (1997) 137-153
-
(1997)
Int. J. Mass Spectrom. Ion Processes
, vol.164
, pp. 137-153
-
-
Nold, M.J.1
Wesdemiotis, C.2
Yalcin, T.3
Harrison, A.G.4
-
18
-
-
29044431915
-
Spectroscopic and Theoretical Evidence for Oxazolone Ring Formation in Collision Induced Dissociation of Peptides
-
Polfer N.C., Oomens J., Suhai S., and Paizs B. Spectroscopic and Theoretical Evidence for Oxazolone Ring Formation in Collision Induced Dissociation of Peptides. J. Am. Chem. Soc. 127 (2005) 17154-17155
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 17154-17155
-
-
Polfer, N.C.1
Oomens, J.2
Suhai, S.3
Paizs, B.4
-
19
-
-
34248531587
-
Infrared Spectroscopy and Theoretical Studies on Gas-Phase Protonated Leu-enkephalin and Its Fragments: Direct Experimental Evidence for the Mobile Proton
-
Polfer N.C., Oomens J., Suhai S., and Paizs B. Infrared Spectroscopy and Theoretical Studies on Gas-Phase Protonated Leu-enkephalin and Its Fragments: Direct Experimental Evidence for the Mobile Proton. J. Am. Chem. Soc. 129 (2007) 5887-5897
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 5887-5897
-
-
Polfer, N.C.1
Oomens, J.2
Suhai, S.3
Paizs, B.4
-
20
-
-
33747609610
-
Scrambling of Sequence Information in Collision-Induced Dissociation of Peptides
-
Harrison A.G., Young A.B., Bleiholder B., Suhai S., and Paizs B. Scrambling of Sequence Information in Collision-Induced Dissociation of Peptides. J. Am. Chem. Soc. 128 (2006) 10364-10365
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 10364-10365
-
-
Harrison, A.G.1
Young, A.B.2
Bleiholder, B.3
Suhai, S.4
Paizs, B.5
-
21
-
-
0027918107
-
Fragmentation Reactions of Multiply-protonated Peptides and Implications for Sequencing by Tandem Mass-spectrometry with Low-Energy Collision-induced Dissociation
-
Tang X.-J., Thibault P., and Boyd R.K. Fragmentation Reactions of Multiply-protonated Peptides and Implications for Sequencing by Tandem Mass-spectrometry with Low-Energy Collision-induced Dissociation. Anal. Chem. 65 (1993) 2824-2834
-
(1993)
Anal. Chem.
, vol.65
, pp. 2824-2834
-
-
Tang, X.-J.1
Thibault, P.2
Boyd, R.K.3
-
22
-
-
41049113428
-
Evidence for Structural Variants of a- and b-Type Peptide Fragment Ions Using Combined Ion Mobility/Mass Spectrometry
-
Riba-Garcia I., Giles K., Bateman R.H., and Gaskell S.J. Evidence for Structural Variants of a- and b-Type Peptide Fragment Ions Using Combined Ion Mobility/Mass Spectrometry. J. Am. Soc. Mass Spectrom. 19 (2008) 609-613
-
(2008)
J. Am. Soc. Mass Spectrom.
, vol.19
, pp. 609-613
-
-
Riba-Garcia, I.1
Giles, K.2
Bateman, R.H.3
Gaskell, S.J.4
-
23
-
-
0035860166
-
2 Ions Have Oxazolone Structures?. Multistage Mass Spectrometry and Ab Initio Studies on Protonated N-Acyl Amino Acid Methyl Ester Model Systems
-
2 Ions Have Oxazolone Structures?. Multistage Mass Spectrometry and Ab Initio Studies on Protonated N-Acyl Amino Acid Methyl Ester Model Systems. Int. J. Mass Spectrom. Ion Processes 210/211 (2001) 71-87
-
(2001)
Int. J. Mass Spectrom. Ion Processes
, vol.210-211
, pp. 71-87
-
-
Farrugia, J.M.1
O'Hair, R.A.J.2
Reid, G.E.3
-
24
-
-
0034536341
-
Selective Gas-Phase Cleavage at the Peptide Bond C-Terminal to Aspartic Acid in Fixed-Charge Derivatives of Asp-Containing Peptides
-
Gu C., Tsaprailis G., Breci L., and Wysocki V.H. Selective Gas-Phase Cleavage at the Peptide Bond C-Terminal to Aspartic Acid in Fixed-Charge Derivatives of Asp-Containing Peptides. Anal. Chem. 72 (2000) 5804-5813
-
(2000)
Anal. Chem.
, vol.72
, pp. 5804-5813
-
-
Gu, C.1
Tsaprailis, G.2
Breci, L.3
Wysocki, V.H.4
-
25
-
-
0033538311
-
Influence of Secondary Structure on the Fragmentation of Protonated Peptides
-
Tsaprailis G., Nair H., Somogyi A., Wysocki V.H., Zhong W., Futrell J.H., Summerfield S.G., and Gaskell S.J. Influence of Secondary Structure on the Fragmentation of Protonated Peptides. J. Am. Chem. Soc. 121 (1999) 5142-5154
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 5142-5154
-
-
Tsaprailis, G.1
Nair, H.2
Somogyi, A.3
Wysocki, V.H.4
Zhong, W.5
Futrell, J.H.6
Summerfield, S.G.7
Gaskell, S.J.8
-
26
-
-
0035949540
-
-
Farrugia, J. M.; Taverner, T.; O'Hair, R. A. J. Side-Chain Involvement in the Fragmentation Reactions of the Protonated Methyl Esters of Histidine and Its Peptides. 2001, 209, 99-112.
-
Farrugia, J. M.; Taverner, T.; O'Hair, R. A. J. Side-Chain Involvement in the Fragmentation Reactions of the Protonated Methyl Esters of Histidine and Its Peptides. 2001, 209, 99-112.
-
-
-
-
27
-
-
56949103268
-
Bifurcating Fragmentation Behavior of Gas-Phase Tryptic Peptide Dications in Collisional Activation
-
doi. 10.1016/j.jasms.2008.08.003
-
Savitski M.M., Falth M., Eva Fung Y.M., Adams C.M., and Zubarev R.A. Bifurcating Fragmentation Behavior of Gas-Phase Tryptic Peptide Dications in Collisional Activation. J. Am. Soc. Mass Spectrom. (2008) doi. 10.1016/j.jasms.2008.08.003
-
(2008)
J. Am. Soc. Mass Spectrom.
-
-
Savitski, M.M.1
Falth, M.2
Eva Fung, Y.M.3
Adams, C.M.4
Zubarev, R.A.5
-
28
-
-
0032231991
-
Origin of Product Ions in the MS/MS Spectra of Peptides in a Quadrupole Ion Trap
-
Vachet R.W., Ray K.L., and Glish G.L. Origin of Product Ions in the MS/MS Spectra of Peptides in a Quadrupole Ion Trap. J. Am. Soc. Mass Spectrom. 9 (1998) 341-344
-
(1998)
J. Am. Soc. Mass Spectrom.
, vol.9
, pp. 341-344
-
-
Vachet, R.W.1
Ray, K.L.2
Glish, G.L.3
-
30
-
-
0030861687
-
Novel Peptide Dissociation: Gas-Phase Intramolecular Rearrangement of Internal Amino Acid Residues
-
Vachet R.W., Bishop B.M., Erickson B.W., and Glish G.L. Novel Peptide Dissociation: Gas-Phase Intramolecular Rearrangement of Internal Amino Acid Residues. J. Am. Chem. Soc. 119 (1997) 5481-5488
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 5481-5488
-
-
Vachet, R.W.1
Bishop, B.M.2
Erickson, B.W.3
Glish, G.L.4
-
31
-
-
39849088020
-
On the Dynamics of Fragment Isomerization in Collision-Induced Dissociation of Peptides
-
Polfer N.C., Bohrer B.C., Plasencia M.D., Paizs B., and Clemmer D.E. On the Dynamics of Fragment Isomerization in Collision-Induced Dissociation of Peptides. J. Phys. Chem. A 112 (2008) 1286-1293
-
(2008)
J. Phys. Chem. A
, vol.112
, pp. 1286-1293
-
-
Polfer, N.C.1
Bohrer, B.C.2
Plasencia, M.D.3
Paizs, B.4
Clemmer, D.E.5
-
32
-
-
56949085394
-
-
Bleiholder, C.; Osburn, S.; Williams, T. D.; Suhai, S.; Van Stipdonk, M.; Harrison, A. G.; Paizs, B. Sequence Scrambling Fragmentation Pathways of Protonated Peptides, unpublished.
-
Bleiholder, C.; Osburn, S.; Williams, T. D.; Suhai, S.; Van Stipdonk, M.; Harrison, A. G.; Paizs, B. Sequence Scrambling Fragmentation Pathways of Protonated Peptides, unpublished.
-
-
-
-
33
-
-
56949083206
-
Fmoc Solid Phase Peptide Synthesis-A Practical Approach
-
Chan W.C., and White P.D. (Eds), Oxford University Press, New York
-
Fmoc Solid Phase Peptide Synthesis-A Practical Approach. In: Chan W.C., and White P.D. (Eds). Interaction between neurons and glia in aging and disease (2000), Oxford University Press, New York
-
(2000)
Interaction between neurons and glia in aging and disease
-
-
-
34
-
-
0036009102
-
Multi-Stage Tandem Mass Spectrometry of Metal Cationized Leucine Enkephalin and Leucine Enkephalin Amide
-
Barr J.M., and Van Stipdonk M.J. Multi-Stage Tandem Mass Spectrometry of Metal Cationized Leucine Enkephalin and Leucine Enkephalin Amide. Rapid Commun. Mass Spectrom. 16 (2002) 566-578
-
(2002)
Rapid Commun. Mass Spectrom.
, vol.16
, pp. 566-578
-
-
Barr, J.M.1
Van Stipdonk, M.J.2
-
36
-
-
34248555049
-
-
University of California, San Francisco
-
Case D.A., Pearlman D.A., Caldwell J.W., Cheatham III T.E., Ross W.S., Simmerling C.L., Darden T.A., Merz K.M., Stanton R.V., Cheng A.L., Vincent J.J., Crowley M., Tsui V., Radmer R.J., Duan Y., Pitera J., Massova I.G., Seibel G.L., Singh U.C., Weiner P.K., and Kollmann P.A. AMBER 99 (1999), University of California, San Francisco
-
(1999)
AMBER 99
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham III, T.E.4
Ross, W.S.5
Simmerling, C.L.6
Darden, T.A.7
Merz, K.M.8
Stanton, R.V.9
Cheng, A.L.10
Vincent, J.J.11
Crowley, M.12
Tsui, V.13
Radmer, R.J.14
Duan, Y.15
Pitera, J.16
Massova, I.G.17
Seibel, G.L.18
Singh, U.C.19
Weiner, P.K.20
Kollmann, P.A.21
more..
-
37
-
-
56949100934
-
-
Gaussian 03, Revision C.02, Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, Jr., J. A.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.;
-
Gaussian 03, Revision C.02, Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, Jr., J. A.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; and Pople, J. A.; Gaussian, Inc., Wallingford CT, 2004.
-
-
-
-
38
-
-
10044229477
-
Fragmentation of Protonated Oligoalanines: Amide Bond Cleavage and Beyond
-
Harrison A.G., and Young A.B. Fragmentation of Protonated Oligoalanines: Amide Bond Cleavage and Beyond. J. Am. Soc. Mass Spectrom. 15 (2004) 1810-1819
-
(2004)
J. Am. Soc. Mass Spectrom.
, vol.15
, pp. 1810-1819
-
-
Harrison, A.G.1
Young, A.B.2
-
40
-
-
34250789712
-
Backbone Cleavages and Sequential Loss of Carbon Monoxide and Ammonia from Protonated AGG: A Combined Tandem Mass Spectrometry, Isotope Labeling, and Theoretical Study
-
Bythell B.J., Barofsky D.F., Pingitore F., Wang P., Wesdemiotis C., and Paizs B. Backbone Cleavages and Sequential Loss of Carbon Monoxide and Ammonia from Protonated AGG: A Combined Tandem Mass Spectrometry, Isotope Labeling, and Theoretical Study. J. Am. Soc. Mass Spectrom. 18 (2007) 1291-1303
-
(2007)
J. Am. Soc. Mass Spectrom.
, vol.18
, pp. 1291-1303
-
-
Bythell, B.J.1
Barofsky, D.F.2
Pingitore, F.3
Wang, P.4
Wesdemiotis, C.5
Paizs, B.6
-
41
-
-
0042549101
-
The Unimolecular Chemistry of Protonated Glycinamide and the Proton Affinity of Glycinamide Mass Spectrometric Experiments and Theoretical Model
-
Kinser R.D., Ridge D.P., Hvistendahl G., Rasmussen B., and Uggerud E. The Unimolecular Chemistry of Protonated Glycinamide and the Proton Affinity of Glycinamide Mass Spectrometric Experiments and Theoretical Model. Chem. Eur. J. 2 (1996) 1143-1149
-
(1996)
Chem. Eur. J.
, vol.2
, pp. 1143-1149
-
-
Kinser, R.D.1
Ridge, D.P.2
Hvistendahl, G.3
Rasmussen, B.4
Uggerud, E.5
-
42
-
-
56949095980
-
-
Allen, J. M.; Black, D. M.; Johnson, J. S.; Glish, G. L.; Bythell, B. J.; Paizs, B. Why Do b3 Ions not Form a3 Ions? Unpublished.
-
Allen, J. M.; Black, D. M.; Johnson, J. S.; Glish, G. L.; Bythell, B. J.; Paizs, B. Why Do b3 Ions not Form a3 Ions? Unpublished.
-
-
-
|