RAPD: A database of recombinantly-produced antimicrobial peptides

FEMS Microbiology Letters

Volumn 289, Issue 2, 2008, Pages 126-129

  Li, Yifeng ^a   Chen, Zhengxin ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF NEBRASKA AT OMAHA   (United States)

Author keywords

Antimicrobial peptides; Chemical cleavage; Database; Enzymatic cleavage; Fusion expression; Recombinant approaches

Indexed keywords

POLYPEPTIDE ANTIBIOTIC AGENT;

ARTICLE; BIOINFORMATICS; DATA ANALYSIS; DATA BASE; DATA EXTRACTION; INFORMATION; PRIORITY JOURNAL; PROTEIN EXPRESSION; RECOMBINANTLY PRODUCED ANTIMICROBIAL PEPTIDES DATABASE; WEB BROWSER;

ANTI-BACTERIAL AGENTS; BACTERIA; DATABASE MANAGEMENT SYSTEMS; DATABASES, PROTEIN; GENE EXPRESSION; PEPTIDES; USER-COMPUTER INTERFACE; YEASTS;

EID: 56649106249     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2008.01357.x     Document Type: Article

References (34)

1. Beaulieu L, Tolkatchev D, Jetté JF, Groleau D Subirade M (2007) Production of active pediocin PA-1 in Escherichia coli using a thioredoxin gene fusion expression approach: cloning, expression, purification, and characterization. Can J Microbiol 53 : 1246 1258.
2. Boman HG (1995) Peptide antibiotics and their role in innate immunity. Annu Rev Immunol 13 : 61 92.
3. Brahmachary M, Krishnan SP, Koh JL, Khan AM, Seah SH, Tan TW, Brusic V Bajic VB (2004) ANTIMIC: a database of antimicrobial sequences. Nucleic Acids Res 32 : D586 D589.
4. Bryksa BC, MacDonald LD, Patrzykat A, Douglas SE Mattatall NR (2006) A C-terminal glycine suppresses production of pleurocidin as a fusion peptide in Escherichia coli. Protein Expres Purif 45 : 88 98.
5. Burrowes OJ, Diamond G Lee TC (2005) Recombinant expression of pleurocidin cDNA using the Pichia pastoris expression system. J Biomed Biotechnol 4 : 374 384.
6. Chen YQ, Zhang SQ, Li BC, Qiu W, Jiao B, Zhang J Diao ZY (2008) Expression of a cytotoxic cationic antibacterial peptide in Escherichia coli using two fusion partners. Protein Expres Purif 57 : 303 311.
7. Fjell CD, Hancock RE Cherkasov A (2007) AMPer: a database and an automated discovery tool for antimicrobial peptides. Bioinformatics 23 : 1148 1155.
8. Gueguen Y, Garnier J, Robert L et al 2006) PenBase, the shrimp antimicrobial peptide penaeidin database: sequence-based classification and recommended nomenclature. Dev Comp Immunol 30 : 283 288.
9. Gutiérrez J, Criado R, Martín M, Herranz C, Cintas LM Hernández PE (2005) Production of enterocin P, an antilisterial pediocin-like bacteriocin from Enterococcus faecium P13, in Pichia pastoris. Antimicrob Agents Ch 49 : 3004 3008.
10. Hong IP, Lee SJ, Kim YS Choi SG (2007) Recombinant expression of human cathelicidin (hCAP18/LL-37) in Pichia pastoris. Biotechnol Lett 29 : 73 78.
11. Ingham AB Moore RJ (2007) Recombinant production of antimicrobial peptides in heterologous microbial systems. Biotechnol Appl Bioch 47 : 1 9.
12. Ingham AB, Sproat KW, Tizard ML Moore RJ (2005) A versatile system for the expression of nonmodified bacteriocins in Escherichia coli. J Appl Microbiol 98 : 676 683.
13. Jin F, Xu X, Wang L, Zhang W Gu D (2006) Expression of recombinant hybrid peptide cecropinA(1-8)-magainin2(1-12) in Pichia pastoris: purification and characterization. Protein Expres Purif 50 : 147 156.
14. Koliaraki V, Marinou M, Samiotaki M, Panayotou G, Pantopoulos K Mamalaki A (2008) Iron regulatory and bactericidal properties of human recombinant hepcidin expressed in Pichia pastoris. Biochimie 90 : 726 735.
15. Lee JH, Kim JH, Hwang SW, Lee WJ, Yoon HK, Lee HS Hong SS (2000) High-level expression of antimicrobial peptide mediated by a fusion partner reinforcing formation of inclusion bodies. Biochem Bioph Res Co 277 : 575 580.
16. Li Y, Li X, Li H, Lockridge O Wang G (2007) A novel method for purifying recombinant human host defense cathelicidin LL-37 by utilizing its inherent property of aggregation. Protein Expres Purif 54 : 157 165.
17. McPhee JB Hancock RE (2005) Function and therapeutic potential of host defence peptides. J Pept Sci 11 : 677 687.
18. Moon JY, Henzler-Wildman KA Ramamoorthy A (2006) Expression and purification of a recombinant LL-37 from Escherichia coli. Biochim Biophys Acta 1758 : 1351 1358.
19. Nicolas P Mor A (1995) Peptides as weapons against microorganisms in the chemical defense system of vertebrates. Annu Rev Microbiol 49 : 277 304.
20. Piers KL, Brown MH Hancock RE (1993) Recombinant DNA procedures for producing small antimicrobial cationic peptides in bacteria. Gene 134 : 7 13.
21. Quadri LE, Yan LZ, Stiles ME Vederas JC (1997) Effect of amino acid substitutions on the activity of carnobacteriocin B2. Overproduction of the antimicrobial peptide, its engineered variants, and its precursor in Escherichia coli. J Biol Chem 272 : 3384 3388.
22. Seebah S, Suresh A, Zhuo S, Choong YH, Chua H, Chuon D, Beuerman R Verma C (2006) Defensins knowledgebase: a manually curated database and information source focused on the defensins family of antimicrobial peptides. Nucleic Acids Res 35 : D265 D268.
23. Sudbery PE (1996) The expression of recombinant proteins in yeasts. Curr Opin Biotech 7 : 517 524.
24. Tossi A Sandri L (2002) Molecular diversity in gene-encoded, cationic antimicrobial polypeptides. Curr Pharm Design 8 : 743 761.
25. Wade D Englund J (2002) Synthetic antibiotic peptides database. Protein Peptide Lett 9 : 53 57.
26. Wang Z Wang G (2004) APD: the antimicrobial peptide database. Nucleic Acids Res 32 : D590 D592.
27. Whitmore L Wallace BA (2004) The peptaibol database: a database for sequences and structures of naturally occurring peptaibols. Nucleic Acids Res 32 : D593 D594.
28. Xu F, Meng K, Wang YR, Luo HY, Yang PL, Wu NF, Fan YL Yao B (2008) Eukaryotic expression and antimicrobial spectrum determination of the peptide tachyplesin II. Protein Expres Purif 58 : 175 183.
29. Xu X, Jin F, Yu X, Ren S, Hu J Zhang W (2007) High-level expression of the recombinant hybrid peptide cecropinA(1-8)-magainin2(1-12) with an ubiquitin fusion partner in Escherichia coli. Protein Expres Purif 55 : 175 182.
30. Zhang H, Yuan Q, Zhu Y Ma R (2005) Expression and preparation of recombinant hepcidin in Escherichia coli. Protein Expres Purif 41 : 409 416.
31. Zhang J, Zhang SQ, Wu X, Chen YQ Diao ZY (2006) Expression and characterization of antimicrobial peptide ABP-CM4 in methylotrophic yeast Pichia pastoris. Process Biochem 41 : 251 256.
32. Zhang J, Li F, Wang Z Xiang J (2007a) Cloning and recombinant expression of a crustin-like gene from Chinese shrimp, Fenneropenaeus chinensis. J Biotechnol 127 : 605 614.
33. Zhang J, Li F, Wang Z Xiang J (2007b) Expression, purification, and characterization of recombinant Chinese shrimp crustin-like protein (CruFc) in Pichia pastoris. Biotechnol Lett 29 : 813 817.
34. Zhou QF, Luo XG, Ye L Xi T (2007) High-level production of a novel antimicrobial peptide perinerin in Escherichia coli by fusion expression. Curr Microbiol 54 : 366 370.