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Volumn 5251 LNBI, Issue , 2008, Pages 1-13

Multichromosomal genome median and halving problems

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEAR PROPULSION; TECHNICAL PRESENTATIONS;

EID: 56649103607     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-87361-7_1     Document Type: Conference Paper
Times cited : (19)

References (26)
  • 1
    • 42349094694 scopus 로고    scopus 로고
    • Adam, Z., Sankoff, D.: The ABCs of MGR with DCJ. Evol. Bio-inform. 4, 69-74 (2008)
    • Adam, Z., Sankoff, D.: The ABCs of MGR with DCJ. Evol. Bio-inform. 4, 69-74 (2008)
  • 2
    • 33847705287 scopus 로고    scopus 로고
    • Colored de Bruijn graphs and the genome halving problem
    • Alekseyev, M., Pevzner, P.: Colored de Bruijn graphs and the genome halving problem. TCBB 4, 98-107 (2008)
    • (2008) TCBB , vol.4 , pp. 98-107
    • Alekseyev, M.1    Pevzner, P.2
  • 3
    • 33750264868 scopus 로고    scopus 로고
    • Bergeron, A., Mixtacki, J., Stoye, J.: A unifying view of genome rearrangements. In: Bücher, P., Moret, B.M.E. (eds.) WABI 2006. LNCS (LNBI), 4175, pp. 163-173. Springer, Heidelberg (2006)
    • Bergeron, A., Mixtacki, J., Stoye, J.: A unifying view of genome rearrangements. In: Bücher, P., Moret, B.M.E. (eds.) WABI 2006. LNCS (LNBI), vol. 4175, pp. 163-173. Springer, Heidelberg (2006)
  • 4
    • 0008432431 scopus 로고    scopus 로고
    • On some tighter inapproximability results: Further improvements
    • Univ. of Trier
    • Berman, P., Karpinski, M.: On some tighter inapproximability results: Further improvements. ECCC Report 65, Univ. of Trier. (1998), http://www.eccc.uni-trier.de/
    • (1998) ECCC Report , vol.65
    • Berman, P.1    Karpinski, M.2
  • 5
    • 0036143403 scopus 로고    scopus 로고
    • Genome-scale evolution: Reconstructing gene orders in the ancestral species
    • Bourque, G., Pevzner, P.A.: Genome-scale evolution: Reconstructing gene orders in the ancestral species. Genome Res. 12, 26-36 (2002)
    • (2002) Genome Res , vol.12 , pp. 26-36
    • Bourque, G.1    Pevzner, P.A.2
  • 6
    • 56649089863 scopus 로고    scopus 로고
    • Bryant, D.: The complexity of the breakpoint median problem. TR CRM-2579. Centre de recherches mathématiques, Université de Montréal (1998)
    • Bryant, D.: The complexity of the breakpoint median problem. TR CRM-2579. Centre de recherches mathématiques, Université de Montréal (1998)
  • 7
    • 3843132934 scopus 로고    scopus 로고
    • The reversal median problem
    • Caprara, A.: The reversal median problem. INFORMS J. Comput. 15, 93-113 (2003)
    • (2003) INFORMS J. Comput , vol.15 , pp. 93-113
    • Caprara, A.1
  • 9
    • 0037623969 scopus 로고    scopus 로고
    • The reconstruction of doubled genomes
    • El-Mabrouk, N., Sankoff, D.: The reconstruction of doubled genomes. SIAM J. Comput. 32, 754-792 (2003)
    • (2003) SIAM J. Comput , vol.32 , pp. 754-792
    • El-Mabrouk, N.1    Sankoff, D.2
  • 10
    • 0002856077 scopus 로고    scopus 로고
    • Transforming cabbage into turnip: Polynomial algorithm for sorting signed permutations by reversals
    • Hannenhalli, S., Pevzner, P.A.: Transforming cabbage into turnip: Polynomial algorithm for sorting signed permutations by reversals. JACM 46, 1-27 (1999)
    • (1999) JACM , vol.46 , pp. 1-27
    • Hannenhalli, S.1    Pevzner, P.A.2
  • 11
    • 0029493079 scopus 로고
    • Transforming men into mice (polynomial algorithm for genomic distance problem)
    • Hannenhalli, S., Pevzner, P.A.: Transforming men into mice (polynomial algorithm for genomic distance problem). In: FOCS 1995, pp. 581-592 (1995)
    • (1995) FOCS 1995 , pp. 581-592
    • Hannenhalli, S.1    Pevzner, P.A.2
  • 12
    • 34447289460 scopus 로고    scopus 로고
    • Genome rearrangements: A correct algorithm for optimal capping
    • Jean, G., Nikolski, M.: Genome rearrangements: a correct algorithm for optimal capping. Inf. Process Lett. 104, 14-20 (2007)
    • (2007) Inf. Process Lett , vol.104 , pp. 14-20
    • Jean, G.1    Nikolski, M.2
  • 13
    • 47249129518 scopus 로고    scopus 로고
    • Lenne, R., Solnon, C., Stiitzle, T., Tannier, E., Birattari, M.: Reactive stochastic local search algorithms for the genomic median problem. In: van Hemert, J., Cotta, C. (eds.) EvoCOP 2008. LNCS, 4972, pp. 266-276. Springer, Heidelberg (2008)
    • Lenne, R., Solnon, C., Stiitzle, T., Tannier, E., Birattari, M.: Reactive stochastic local search algorithms for the genomic median problem. In: van Hemert, J., Cotta, C. (eds.) EvoCOP 2008. LNCS, vol. 4972, pp. 266-276. Springer, Heidelberg (2008)
  • 15
    • 48249112137 scopus 로고    scopus 로고
    • Genome halving under DCJ revisited
    • Hu, X, Wang, J, eds, COCOON 2008, Springer, Heidelberg
    • Mixtacki, J.: Genome halving under DCJ revisited. In: Hu, X., Wang, J. (eds.) COCOON 2008. LNCS, vol. 5092. Springer, Heidelberg (2008)
    • (2008) LNCS , vol.5092
    • Mixtacki, J.1
  • 16
    • 4444360159 scopus 로고    scopus 로고
    • Two notes on genome rearrangement
    • Ozery-Flato, M., Shamir, R.: Two notes on genome rearrangement. JBCB 1, 71-94 (2003)
    • (2003) JBCB , vol.1 , pp. 71-94
    • Ozery-Flato, M.1    Shamir, R.2
  • 17
    • 56649116068 scopus 로고    scopus 로고
    • Pe'er, I., Shamir, R.: The median problems for breakpoints are NP-complete. In: ECCC (1998)
    • Pe'er, I., Shamir, R.: The median problems for breakpoints are NP-complete. In: ECCC (1998)
  • 18
    • 84947708594 scopus 로고    scopus 로고
    • The median problem for breakpoints in comparative genomics
    • Jiang, T, Lee, D.T, eds, COCOON 1997, Springer, Heidelberg
    • Sankoff, D., Blanchette, M.: The median problem for breakpoints in comparative genomics. In: Jiang, T., Lee, D.T. (eds.) COCOON 1997. LNCS, vol. 1276, pp. 251-263. Springer, Heidelberg (1997)
    • (1997) LNCS , vol.1276 , pp. 251-263
    • Sankoff, D.1    Blanchette, M.2
  • 19
    • 0038658640 scopus 로고    scopus 로고
    • Efficient algorithms for multichromosomal genome rearrangements
    • Tesler, G.: Efficient algorithms for multichromosomal genome rearrangements. JCSS 65, 587-609 (2002)
    • (2002) JCSS , vol.65 , pp. 587-609
    • Tesler, G.1
  • 20
    • 70349797782 scopus 로고    scopus 로고
    • Warren, R., Sankoff, D.: Genome halving with general operations. APBC 2008, Adv. Bioinform. Comput. Biol. 6, 231-240 (2008)
    • Warren, R., Sankoff, D.: Genome halving with general operations. APBC 2008, Adv. Bioinform. Comput. Biol. 6, 231-240 (2008)
  • 22
    • 24044535485 scopus 로고    scopus 로고
    • Efficient sorting of genomic permutations by translocation, inversion and block interchange
    • Yancopoulos, S., Attie, O., Friedberg, R.: Efficient sorting of genomic permutations by translocation, inversion and block interchange. Bioinform. 21, 3340-3346 (2005)
    • (2005) Bioinform , vol.21 , pp. 3340-3346
    • Yancopoulos, S.1    Attie, O.2    Friedberg, R.3
  • 23
    • 69249238025 scopus 로고    scopus 로고
    • The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral Populus diploid
    • in press
    • Zheng, C., Wall, P.K., Leebens-Mack, J., de Pamphilis, C., Albert, V.A., Sankoff, D.: The effect of massive gene loss following whole genome duplication on the algorithmic reconstruction of the ancestral Populus diploid. In: CSB 2008 (in press, 2008)
    • (2008) CSB
    • Zheng, C.1    Wall, P.K.2    Leebens-Mack, J.3    de Pamphilis, C.4    Albert, V.A.5    Sankoff, D.6
  • 24
    • 46249099578 scopus 로고    scopus 로고
    • Guided genome halving: Hardness, heuristics and the history of the Hemiascomycetes
    • in press
    • Zheng, Z., Zhu, Q., Adam, Z., SankofF, D.: Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes. In: ISMB 2008 (in press, 2008)
    • (2008) ISMB
    • Zheng, Z.1    Zhu, Q.2    Adam, Z.3    SankofF, D.4
  • 25
    • 34547846887 scopus 로고    scopus 로고
    • Genome halving with an outgroup
    • Zheng, Z., Zhu, Q., Sankoff, D.: Genome halving with an outgroup. Evol. Bioinform. 2, 319-326 (2006)
    • (2006) Evol. Bioinform , vol.2 , pp. 319-326
    • Zheng, Z.1    Zhu, Q.2    Sankoff, D.3
  • 26
    • 56649108198 scopus 로고    scopus 로고
    • Zheng, Z., Zhu, Q., Sankoff, D.: Descendants of whole genome duplication within gene order phylogeny. In: JOB (in press, 2008)
    • Zheng, Z., Zhu, Q., Sankoff, D.: Descendants of whole genome duplication within gene order phylogeny. In: JOB (in press, 2008)


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