-
1
-
-
2942514591
-
Biochemical network stochastic simulator (BioNetS): Software for stochastic modeling of biochemical networks
-
Adalsteinsson D, McMillen D, Elston TC (2004) Biochemical network stochastic simulator (BioNetS): Software for stochastic modeling of biochemical networks. BMC Bioinformatics 5:24
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 24
-
-
Adalsteinsson, D.1
McMillen, D.2
Elston, T.C.3
-
2
-
-
56449099378
-
-
Technical Report YALEU/DCS/TR-1358, Yale University Department of Computer Science, 2006. Extended abstract to appear, DISC
-
Angluin D, Aspnes J, Eisenstat D (2006) Fast computation by population protocols with a leader. Technical Report YALEU/DCS/TR-1358, Yale University Department of Computer Science, 2006. Extended abstract to appear, DISC
-
(2006)
Fast Computation By Population Protocols With a Leader
-
-
Angluin, D.1
Aspnes, J.2
Eisenstat, D.3
-
3
-
-
0031879114
-
Stochastic kinetic analysis of a developmental pathway bifurcation in phage-l Escherichia coli
-
Arkin AP, Ross J, McAdams HH (1998) Stochastic kinetic analysis of a developmental pathway bifurcation in phage-l Escherichia coli. Genetics 149:1633-1648
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.P.1
Ross, J.2
McAdams, H.H.3
-
4
-
-
23044535051
-
A probabilistic-time hierarchy theorem for 'slightly non-uniform' algorithms
-
Barak B (2002) A probabilistic-time hierarchy theorem for 'slightly non-uniform' algorithms. In Proceedings of RANDOM
-
(2002)
Proceedings of RANDOM
-
-
Barak, B.1
-
5
-
-
0010146684
-
The thermodynamics of computation - A review
-
Bennett CH (1982) The thermodynamics of computation - a review. Int J Theor Phys 21(12):905-939
-
(1982)
Int J Theor Phys
, vol.21
, Issue.12
, pp. 905-939
-
-
Bennett, C.H.1
-
7
-
-
43749108705
-
Networks of relations
-
PhD thesis, California Institute of Technology
-
Cook M (2005) Networks of relations. PhD thesis, California Institute of Technology
-
(2005)
-
-
Cook, M.1
-
8
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403:335-338
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
12
-
-
0001144902
-
Efficient exact stochastic simulation of chemical systems with many species and many channels
-
Gibson M, Bruck J (2000) Efficient exact stochastic simulation of chemical systems with many species and many channels. J Phys Chem A 104:1876-1889
-
(2000)
J Phys Chem A
, vol.104
, pp. 1876-1889
-
-
Gibson, M.1
Bruck, J.2
-
13
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81:2340-2361
-
(1977)
J Phys Chem
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
14
-
-
44049109914
-
A rigorous derivation of the chemical master equation
-
Gillespie DT (1992) A rigorous derivation of the chemical master equation. Physica A 188:404-425
-
(1992)
Physica A
, vol.188
, pp. 404-425
-
-
Gillespie, D.T.1
-
15
-
-
34249950625
-
Stochastic simulation of chemical kinetics
-
Gillespie DT (2007) Stochastic simulation of chemical kinetics. Annu Rev Phys Chem 58:35-55
-
(2007)
Annu Rev Phys Chem
, vol.58
, pp. 35-55
-
-
Gillespie, D.T.1
-
16
-
-
0029394767
-
Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli?
-
Guptasarma P (1995) Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? Bioessays 17:987-997
-
(1995)
Bioessays
, vol.17
, pp. 987-997
-
-
Guptasarma, P.1
-
18
-
-
0036204115
-
STOCKS: STOChastic kinetic simulations of biochemical systems with Gillespie algorithm
-
Kierzek AM (2002) STOCKS: STOChastic kinetic simulations of biochemical systems with Gillespie algorithm. Bioinformatics 18:470-481
-
(2002)
Bioinformatics
, vol.18
, pp. 470-481
-
-
Kierzek, A.M.1
-
19
-
-
0001455869
-
The relationship between stochastic and deterministic models for chemical reactions
-
Kurtz TG (1972) The relationship between stochastic and deterministic models for chemical reactions. J Chem Phys 57:2976-2978
-
(1972)
J Chem Phys
, vol.57
, pp. 2976-2978
-
-
Kurtz, T.G.1
-
21
-
-
0004238344
-
-
Oxford University Press
-
Levin B (1999) Genes VII. Oxford University Press
-
(1999)
Genes VII
-
-
Levin, B.1
-
22
-
-
33846127486
-
Medium scale integration of molecular logic gates in an automaton
-
Macdonald J, Li Y, Sutovic M, Lederman H, Pendri K, Lu W, Andrews BL, Stefanovic D, Stojanovic MN (2006) Medium scale integration of molecular logic gates in an automaton. Nano Lett 6:2598-2603
-
(2006)
Nano Lett
, vol.6
, pp. 2598-2603
-
-
Macdonald, J.1
Li, Y.2
Sutovic, M.3
Lederman, H.4
Pendri, K.5
Lu, W.6
Andrews, B.L.7
Stefanovic, D.8
Stojanovic, M.N.9
-
23
-
-
4243223597
-
Chemical kinetics is Turing universal
-
Magnasco MO (1997) Chemical kinetics is Turing universal. Phys Rev Lett 78:1190-1193
-
(1997)
Phys Rev Lett
, vol.78
, pp. 1190-1193
-
-
Magnasco, M.O.1
-
24
-
-
0031029852
-
Stochastic mechanisms in gene expression
-
McAdams HH, Arkin AP (1997) Stochastic mechanisms in gene expression. Proc Natl Acad Sci 94:814-819
-
(1997)
Proc Natl Acad Sci
, vol.94
, pp. 814-819
-
-
McAdams, H.H.1
Arkin, A.P.2
-
25
-
-
0001601301
-
Stochastic approach to chemical kinetics
-
McQuarrie DA (1967) Stochastic approach to chemical kinetics. J Appl Probab 4:413-478
-
(1967)
J Appl Probab
, vol.4
, pp. 413-478
-
-
McQuarrie, D.A.1
-
26
-
-
0001699148
-
Recursive unsolvability of Post's Problem of 'tag' and other topics in theory of Turing machines
-
Minsky ML (1961) Recursive unsolvability of Post's Problem of 'tag' and other topics in theory of Turing machines. Annals of Math 74:437-455
-
(1961)
Annals of Math
, vol.74
, pp. 437-455
-
-
Minsky, M.L.1
-
27
-
-
33746332612
-
-
Technical Report NUIM-CS-2005-TR-12, Dept. of Computer Science, NUI Maynooth
-
Neary T, Woods D (2005) A small fast universal Turing machine. Technical Report NUIM-CS-2005-TR-12, Dept. of Computer Science, NUI Maynooth
-
(2005)
A Small Fast Universal Turing Machine
-
-
Neary, T.1
Woods, D.2
-
28
-
-
0037174201
-
A guide to membrane computing
-
Paun G, Rozenberg G (2002) A guide to membrane computing. Theor Comput Sci 287:73-100
-
(2002)
Theor Comput Sci
, vol.287
, pp. 73-100
-
-
Paun, G.1
Rozenberg, G.2
-
29
-
-
0002160461
-
A DNA and restriction enzyme implementation of Turing machines
-
Rothemund PWK (1996) A DNA and restriction enzyme implementation of Turing machines. In: Proceedings DNA Computers, pp 75-120
-
(1996)
Proceedings DNA Computers
, pp. 75-120
-
-
Rothemund, P.W.K.1
-
34
-
-
28544440364
-
Reconstruction of genetic circuits
-
Sprinzak D, Elowitz MB (2005) Reconstruction of genetic circuits. Nature 438:443-448
-
(2005)
Nature
, vol.438
, pp. 443-448
-
-
Sprinzak, D.1
Elowitz, M.B.2
-
36
-
-
33645293152
-
An excitable gene regulatory circuit induces transient cellular differentiation
-
Suel GM, Garcia-Ojalvo J, Liberman LM, Elowitz MB (2006) An excitable gene regulatory circuit induces transient cellular differentiation. Nature 440:545-550
-
(2006)
Nature
, vol.440
, pp. 545-550
-
-
Suel, G.M.1
Garcia-Ojalvo, J.2
Liberman, L.M.3
Elowitz, M.B.4
-
38
-
-
0347724159
-
Adaptive stochastic-deterministic chemical kinetic simulations
-
Vasudeva K, Bhalla US (2004) Adaptive stochastic-deterministic chemical kinetic simulations. Bioinformatics 20:78-84
-
(2004)
Bioinformatics
, vol.20
, pp. 78-84
-
-
Vasudeva, K.1
Bhalla, U.S.2
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