Identification of the tRNA-binding protein Arc1p as a novel target of in vivo biotinylation in Saccharomyces cerevisiae

Journal of Biological Chemistry

Volumn 279, Issue 41, 2004, Pages 42445-42452

  Kim, Hyun Soo ^a   Hoja, Ursula ^a   Stolz, Juergen ^b   Sauer, Guido ^c   Schweizer, Eckhart ^a  

^a UNIVERSITY OF ERLANGEN NUREMBERG   (Germany)

^b UNIVERSITY OF REGENSBURG   (Germany)

^c INSTITUTE OF EPIDEMIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINETRIPHOSPHATE; CARBOXYLATION; CATALYSIS; CELLS; METABOLISM; PURIFICATION; YEAST;

BINDING PROTEINS; TRANSCARBOXYLATION;

RNA;

ADENOSINE TRIPHOSPHATE; AMINO ACID TRANSFER RNA LIGASE; ARC1P PROTEIN; ARGININE; AVIDIN; BIOTIN; CARBON 14; CARBOXYLASE; FUNGAL PROTEIN; LIGASE; LYSINE; MONOMER; MUTANT PROTEIN; PROTEIN LIGASE BIRA; PROTEIN LIGASE BP11P; RNA BINDING PROTEIN; STREPTAVIDIN; TRANSFER RNA; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; BIOTINYLATION; CARBOXYLATION; CATALYSIS; CELL METABOLISM; CHEMICAL REACTION; CONSENSUS SEQUENCE; CONTROLLED STUDY; COVALENT BOND; DECARBOXYLATION; ENZYME MECHANISM; ENZYME SPECIFICITY; ENZYME SUBSTRATE; IN VIVO STUDY; ISOTOPE LABELING; MUTATIONAL ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PURIFICATION; PROTEIN RNA BINDING; PROTEIN STRUCTURE; PROTEIN TARGETING; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS; WESTERN BLOTTING;

ADENOSINE TRIPHOSPHATE; BINDING SITES; BIOTIN; BIOTINYLATION; BLOTTING, WESTERN; DNA MUTATIONAL ANALYSIS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; GENETIC COMPLEMENTATION TEST; GENETIC VECTORS; GENOTYPE; GLUTAMATE-TRNA LIGASE; HETEROZYGOTE; LYSINE; METHIONINE-TRNA LIGASE; MUTAGENESIS, SITE-DIRECTED; MUTATION; PLASMIDS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RNA, TRANSFER; RNA-BINDING PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEPHAROSE; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STREPTAVIDIN; SUBCELLULAR FRACTIONS;

BACTERIA (MICROORGANISMS); SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 5644259583     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M407137200     Document Type: Article

References (61)

1. Kögl, F., and Tönnis, B. (1936) Hoppe-Seyler's Z. Physiol. Chem. 242, 43-48
2. Knowles, J. R. (1989) Annu. Rev. Biochem. 58, 195-227
3. Knappe, J., Ringelmann, E., and Lynen, F. (1961) Biochem. Z. 335, 168-176
4. Barker, D. F., and Campbell, A.-M. (1981) J. Mol. Biol. 146, 451-467
5. Cronan, J. E., Jr., and Wallace, J. C. (1995) FEMS Microbiol. Lett. 130, 221-230
6. Lane, M. D., Young, D. L., and Lynen, F. (1964) J. Biol. Chem. 239, 2858-2864
7. Denis, L., Grossemy, M., Douce, K., and Alban, C. (2002) J. Biol. Chem. 277, 10435-10444
8. Cronan, J. E., Jr. (1990) J. Biol. Chem. 265, 10327-10333
9. Leon-del-Rio, A., and Gravel, R. A. (1994) J. Biol. Chem. 269, 22964-22968
10. Chapman-Smith, A., and Cronan, J. E., Jr. (1999) Trends Biochem. Sci. 24, 359-363
11. Eakin, R. E., Snell, E. E., and Williams, R. J. (1941) J. Biol. Chem. 140, 535-543
12. Bayer, E. A., and Wilchek, M. (1990) Methods Enzymol. 184, 138-160
13. Simos, G., Segref, A., Fasiolo, F., Hellmuth, K., Shevchenko, A., Mann, M., and Hurt, E. C. (1996) EMBO J. 15, 5437-5448
14. Gietz, R. D., and Sugino, A. (1988) Gene (Amst.) 74, 527-534
15. Mumberg, D., Muller, R., and Funk, M. (1994) Nucleic Acids Res. 22, 5767-5768
16. Vernet, T., Dignard, D., and Thomas, D. Y. (1987) Gene (Amst.) 52, 225-233
17. Wach, A., Brachat, A., Alberti Segni, C., Rebischung, C., and Philippsen, P. (1997) Yeast 13, 1065-1075
18. Wach, A., Brachat, A., Pohlmann, R., and Philippsen, P. (1994) Yeast 10, 1793-1808
19. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Smith, J. A., Seidmann, J. G., and Struhl, K. (1987) Current Protocols in Molecular Biology, John Wiley & Sons, New York
20. Landt, O., Grunert, H. P., and Hahn, U. (1990) Gene (Amst.) 96, 125-128
21. Rothstein, R. (1991) Methods Enzymol. 194, 281-301
22. Hoja, U., Wellein, C., Greiner, E., and Schweizer, E. (1998) Eur. J. Biochem. 254, 520-526
23. Shevchenko, A., Wilm, M., Vorm, O., and Mann, M. (1996) Anal. Chem. 68, 850-858
24. Vorm, O., Roepstorff, P., and Mann, M. (1994) Anal. Chem. 66, 3281-3287
25. Tsarbopoulos, A., Karas, M., Strupat, K., Pramanik, B. N., Nagabhushan, T. L., and Hillenkamp, F. (1994) Anal. Chem. 66, 2062-2070
26. Gobom, J., Schuerenberg, M., Mueller, M., Theis, D., Lerach, H., and Nordhoff, E. (2001) Anal. Chem. 73, 434-438
27. Hasslacher, M., Ivessa, A. S., Paltauf, F., and Kohlwein, S. D. (1993) J. Biol. Chem. 268, 10946-10952
28. Hoja, U., Marthol, S., Hofmann, J., Stegner, S., Schulz, R., Meier, S., Greiner, E., and Schweizer, E. (2004) J. Biol. Chem. 279, 21779-21786
29. Brewster, N. K., Val, D. L., Walker, M. E., and Wallace, J. C. (1994) Arch. Biochem. Biophys. 311, 62-71
30. Genbauffe, F. S., and Cooper, T. G. (1991) DNA Seq. 36, 19-32
31. Lim, P., Rhode, M., Morris, C. P., and Wallace, J. C. (1987) Arch. Biochem. Biophys. 258, 219-264
32. Glerum, D. M., Koerner, T. J., and Tzagoloff, A. (1995) J. Biol. Chem. 270, 15585-15590
33. Stolz, J., Hoja, U., Meier, S., Sauer, N., and Schweizer, E. (1999) J. Biol. Chem. 274, 18741-18746
34. Frantz, J. D., and Gilbert, W. (1995) J. Biol. Chem. 270, 20692-20697
35. Skerra, A., and Schmidt, T. G. (2000) Methods Enzymol. 326, 271-304
36. Stolz, J., Ludwig, A., and Sauer, N. (1998) FEBS Lett. 440, 213-217
37. Cronan, J. E., Jr., and Reed, K. E. (2000) Methods Enzymol. 326, 440-458
38. Grosshans, H., Hurt, E., and Simos, G. (2000) Genes Dev. 14, 830-840
39. Deinert, K., Fasiolo, F., Hurt, E. C., and Simos, G. (2001) J. Biol. Chem. 276, 6000-6008
40. Galani, K., Grosshans, H., Deinert, K., Hurt, E. C., and Simos, G. (2001) EMBO J. 20, 6889-6898
41. Simos, G., Sauer, A., Fasiolo, F., and Hurt, E. C. (1998) Mol. Cell 1, 235-242
42. Grosshans, H., Simos, G., and Hurt, E. C. (2000) J. Struct. Biol. 129, 288-294
43. Srimonti, S., and Hopper, A. K. (1998) Mol. Biol. Cell 9, 3041-3055
44. Schatz, P. J. (1993) Bio/Technology 11, 1138-1143
45. Beckett, D., Kovaleva, E., and Schatz, P. J. (1999) Protein Sci. 8, 921-929
46. Cull, M. G., and Schatz, P. J. (2000) Methods Enzymol. 326, 430-440
47. Duffy, S., Tsao, K. L., and Waugh, D. S. (1998) Anal. Biochem. 262, 122-128
48. Parrot, M. B., and Barry, M. A. (2000) Mol. Ther. 1, 96-104
49. Athappily, F. K., and Hendrickson, W. A. (1995) Structure 3, 1407-1419
50. Yao, X., Wei, D., Soden, C., Jr., Summers, M. F., and Beckett, D. (1997) Biochemistry 36, 15089-15100
51. Roberts, E. L., Shu, N., Howard, M. J., Broadhurst, R. W., Chapman-Smith, A., Wallace, J. C., Morris, T., Cronan, J. E., Jr., and Perham, R. N. (1999) Biochemistry 38, 5045-5053
52. Kadowaki, T., Zhao, Y., and Tartakioff, A. M. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 2312-2316
53. Schneiter, R., Hitomi, M., Ivessa, A. S., Fasch, E. V., Kohlwein, S. D., and Tartakoff, A. M. (1996) Mol. Cell. Biol. 16, 7161-7172
54. Schneiter, R., Guerra, C. E., Lampl, M., Gogg, G., Kohlwein, S. D., and Klein, H. L. (1999) Mol. Cell. Biol. 19, 3415-3422
55. Hymes, J., and Wolf, B. (1999) J. Nutr. 129, 485-489
56. Hymes, J., Fleischhauer, K., and Wolf, B. (1995) Biochem. Mol. Med. 56, 76-83
57. Cronan, J. E., Jr. (1989) Cell 58, 427-429
58. Schneiter, R., and Kohlwein, S. D. (1997) Cell 88, 431-434
59. Petrelli, F., Coderoni, S., Moretti, P., and Paparelli, M. (1978) Mol. Biol. Rep. 4, 87-92
60. Chauhan, J., and Dakshinamurti, K (1991) J. Biol. Chem. 266, 10035-10038
61. Beckett, D., and Matthews, B. W. (1997) Methods Enzymol. 279, 362-376