메뉴 건너뛰기




Volumn 31, Issue 6-8, 2008, Pages 447-460

Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA)

Author keywords

Identification; MLSA; Multigene; Pantoea; Phylogeny

Indexed keywords

BACTERIAL PROTEIN; DNA TOPOISOMERASE (ATP HYDROLYSING) B; PROTEIN ATPD; PROTEIN INFB; RNA POLYMERASE BETA SUBUNIT; UNCLASSIFIED DRUG;

EID: 56349134885     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2008.09.004     Document Type: Article
Times cited : (305)

References (46)
  • 1
    • 0023864351 scopus 로고
    • Subjective synonymy of Erwinia herbicola, Erwinia milletiae, and Enterobacter agglomerans and redefinition of the taxon by genotypic and phenotypic data
    • Beji A., Mergaert J., Gavini F., Izard D., Kersters K., Leclerc H., and De Ley J. Subjective synonymy of Erwinia herbicola, Erwinia milletiae, and Enterobacter agglomerans and redefinition of the taxon by genotypic and phenotypic data. Int. J. Syst. Bacteriol. 38 (1988) 77-88
    • (1988) Int. J. Syst. Bacteriol. , vol.38 , pp. 77-88
    • Beji, A.1    Mergaert, J.2    Gavini, F.3    Izard, D.4    Kersters, K.5    Leclerc, H.6    De Ley, J.7
  • 3
    • 0021365988 scopus 로고
    • Attempts to classify Herbicola group-Enterobacter agglomerans strains by deoxyribonucleic acid hydridization and phenotypic tests
    • Brenner D.J., Fanning G.R., Knutson J.K.L., Steigerwalt A.G., and Krichevsky M.I. Attempts to classify Herbicola group-Enterobacter agglomerans strains by deoxyribonucleic acid hydridization and phenotypic tests. Int. J. Syst. Bacteriol. 34 (1984) 45-55
    • (1984) Int. J. Syst. Bacteriol. , vol.34 , pp. 45-55
    • Brenner, D.J.1    Fanning, G.R.2    Knutson, J.K.L.3    Steigerwalt, A.G.4    Krichevsky, M.I.5
  • 4
    • 0001723625 scopus 로고
    • Comparison of tumorigenic strains of Erwinia herbicola isolated from table beet with E.h. gypsophilae
    • Burr T.J., Katz B.H., Abawi G.S., and Crosier D.C. Comparison of tumorigenic strains of Erwinia herbicola isolated from table beet with E.h. gypsophilae. Plant Dis. 75 (1991) 855-858
    • (1991) Plant Dis. , vol.75 , pp. 855-858
    • Burr, T.J.1    Katz, B.H.2    Abawi, G.S.3    Crosier, D.C.4
  • 5
    • 0036739319 scopus 로고    scopus 로고
    • Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov.
    • Cleenwerck I., Vandemeulebroecke K., Janssens D., and Swings J. Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. Int. J. Syst. Evol. Microbiol. 52 (2002) 1551-1558
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1551-1558
    • Cleenwerck, I.1    Vandemeulebroecke, K.2    Janssens, D.3    Swings, J.4
  • 6
    • 0032902329 scopus 로고    scopus 로고
    • Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov.
    • Coenye T., Falsen E., Vancanneyt M., Hoste B., Govan J.R.W., Kersters K., and Vandamme P. Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov. Int. J. Syst. Bacteriol. 49 (1999) 405-413
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 405-413
    • Coenye, T.1    Falsen, E.2    Vancanneyt, M.3    Hoste, B.4    Govan, J.R.W.5    Kersters, K.6    Vandamme, P.7
  • 7
    • 0001194415 scopus 로고
    • Galls of Gypsophila paniculata caused by Erwinia herbicola
    • Cooksey D.A. Galls of Gypsophila paniculata caused by Erwinia herbicola. Plant Dis. 70 (1986) 464-468
    • (1986) Plant Dis. , vol.70 , pp. 464-468
    • Cooksey, D.A.1
  • 8
    • 12344274791 scopus 로고    scopus 로고
    • An unusual stem necrosis of rice caused by Pantoea ananas and the first record of this pathogen on rice in Australia
    • Cother E.J., Reinke R., McKenzie C., Lanoiselet V.M., and Noble D.H. An unusual stem necrosis of rice caused by Pantoea ananas and the first record of this pathogen on rice in Australia. Austr. Plant Pathol. 33 (2004) 495-503
    • (2004) Austr. Plant Pathol. , vol.33 , pp. 495-503
    • Cother, E.J.1    Reinke, R.2    McKenzie, C.3    Lanoiselet, V.M.4    Noble, D.H.5
  • 10
    • 0030816742 scopus 로고    scopus 로고
    • Can three incongruence tests predict when data should be combined?
    • Cunningham C.W. Can three incongruence tests predict when data should be combined?. Mol. Biol. Evol. 14 (1997) 733-740
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 733-740
    • Cunningham, C.W.1
  • 11
    • 0036198891 scopus 로고    scopus 로고
    • Evolution of the gyrB gene the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies
    • Dauga C. Evolution of the gyrB gene the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies. Int. J. Syst. Evol. Microbiol. 52 (2002) 531-547
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 531-547
    • Dauga, C.1
  • 13
    • 0034992487 scopus 로고    scopus 로고
    • Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov.
    • Drancourt M., Bollet C., Carta A., and Rousselier P. Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. Int. J. Syst. Evol. Microbiol. 51 (2001) 925-932
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 925-932
    • Drancourt, M.1    Bollet, C.2    Carta, A.3    Rousselier, P.4
  • 14
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki T., Hashimoto Y., and Yabuuchi E. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39 (1989) 224-229
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 15
    • 34247116812 scopus 로고    scopus 로고
    • Pantoea agglomerans liver abscess presenting with a painful thigh
    • Fullerton D.G., Lwin A.A., and Lal S. Pantoea agglomerans liver abscess presenting with a painful thigh. Eur. J. Gastroenterol. Hepatol. 19 (2007) 433-435
    • (2007) Eur. J. Gastroenterol. Hepatol. , vol.19 , pp. 433-435
    • Fullerton, D.G.1    Lwin, A.A.2    Lal, S.3
  • 16
    • 0020611956 scopus 로고
    • Taxonomic study of strains belonging or related to the genus Erwinia, herbicola group, and to the species Enterobacter agglomerans
    • Gavini F., Lefebvre B., and Leclerc H. Taxonomic study of strains belonging or related to the genus Erwinia, herbicola group, and to the species Enterobacter agglomerans. Syst. Appl. Microbiol. 4 (1983) 218-235
    • (1983) Syst. Appl. Microbiol. , vol.4 , pp. 218-235
    • Gavini, F.1    Lefebvre, B.2    Leclerc, H.3
  • 17
    • 0024362786 scopus 로고
    • Transfer of Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 to Pantoea gen. nov. as Pantoea agglomerans comb. nov. and description of Pantoea dispersa sp. nov.
    • Gavini F., Mergaert J., Beji A., Mielcarek C., Izard D., Kersters K., and de Ley J. Transfer of Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 to Pantoea gen. nov. as Pantoea agglomerans comb. nov. and description of Pantoea dispersa sp. nov. Int. J. Syst. Bacteriol. 39 (1989) 337-345
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 337-345
    • Gavini, F.1    Mergaert, J.2    Beji, A.3    Mielcarek, C.4    Izard, D.5    Kersters, K.6    de Ley, J.7
  • 18
    • 34249044492 scopus 로고    scopus 로고
    • Isolation and identification of the causal agent of brown stalk rot, a new disease of maize in South Africa
    • Goszczynska T., Botha W.J., Venter S.N., and Coutinho T.A. Isolation and identification of the causal agent of brown stalk rot, a new disease of maize in South Africa. Plant Dis. 91 (2007) 711-718
    • (2007) Plant Dis. , vol.91 , pp. 711-718
    • Goszczynska, T.1    Botha, W.J.2    Venter, S.N.3    Coutinho, T.A.4
  • 20
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guidon S., and Gascual O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guidon, S.1    Gascual, O.2
  • 21
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 23
    • 0026562718 scopus 로고
    • Pantoea punctata sp. nov., Pantoea citrea sp. nov., and Pantoea terrea sp. nov. isolated from fruit and soil samples
    • Kageyama B., Nakae M., Yagi S., and Sonoyama T. Pantoea punctata sp. nov., Pantoea citrea sp. nov., and Pantoea terrea sp. nov. isolated from fruit and soil samples. Int. J. Syst. Bacteriol. 42 (1992) 203-210
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 203-210
    • Kageyama, B.1    Nakae, M.2    Yagi, S.3    Sonoyama, T.4
  • 24
    • 16244364804 scopus 로고    scopus 로고
    • Enterobacter radicincitans sp. nov., a plant growth promoting species of the family Enterobacteriaceae
    • Kämpfer P., Ruppel S., and Remus R. Enterobacter radicincitans sp. nov., a plant growth promoting species of the family Enterobacteriaceae. Syst. Appl. Microbiol. 28 (2005) 213-221
    • (2005) Syst. Appl. Microbiol. , vol.28 , pp. 213-221
    • Kämpfer, P.1    Ruppel, S.2    Remus, R.3
  • 25
    • 33750998520 scopus 로고    scopus 로고
    • Toward a more robust assessment of intraspecies diversity, using fewer genetic markers
    • Konstantinidis K.T., Ramette A., and Tiedje J.M. Toward a more robust assessment of intraspecies diversity, using fewer genetic markers. Appl. Environ. Microbiol. 72 (2006) 7286-7293
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 7286-7293
    • Konstantinidis, K.T.1    Ramette, A.2    Tiedje, J.M.3
  • 26
    • 0038697375 scopus 로고    scopus 로고
    • Pantoea agglomerans as a cause of septic arthritis after palm tree thorn injury; case report and literature review
    • Kratz, Greenberg D., Barki Y., Cohen E., and Lifshitz M. Pantoea agglomerans as a cause of septic arthritis after palm tree thorn injury; case report and literature review. Arch. Dis. Child. 88 (2003) 542-544
    • (2003) Arch. Dis. Child. , vol.88 , pp. 542-544
    • Kratz1    Greenberg, D.2    Barki, Y.3    Cohen, E.4    Lifshitz, M.5
  • 27
    • 9744242714 scopus 로고    scopus 로고
    • Klebsiella singaporensis sp. nov., a novel isomaltulose-producing bacterium
    • Li X., Zhang D., Chen F., Ma J., Dong Y., and Zhang L. Klebsiella singaporensis sp. nov., a novel isomaltulose-producing bacterium. Int. J. Syst. Evol. Microbiol. 54 (2004) 2131-2136
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 2131-2136
    • Li, X.1    Zhang, D.2    Chen, F.3    Ma, J.4    Dong, Y.5    Zhang, L.6
  • 28
    • 33645878931 scopus 로고    scopus 로고
    • Pantoea peritonitis in a patient receiving chronic ambulatory peritoneal dialysis
    • Lim P., Chen S., Tsai C., and Pai M. Pantoea peritonitis in a patient receiving chronic ambulatory peritoneal dialysis. Nephrology 11 (2006) 97-99
    • (2006) Nephrology , vol.11 , pp. 97-99
    • Lim, P.1    Chen, S.2    Tsai, C.3    Pai, M.4
  • 30
    • 0027473876 scopus 로고
    • Transfer of Erwinia ananas (synonym, Erwinia uredovora) and Erwinia stewartii to the genus Pantoea emend. as Pantoea ananas (Serrano 1928) comb. nov. and Pantoea stewartii (Smith 1898) comb. nov., respectively, and description of Pantoea stewartii subsp. indologenes subsp. nov.
    • Mergaert J., Verdonck L., and Kersters K. Transfer of Erwinia ananas (synonym, Erwinia uredovora) and Erwinia stewartii to the genus Pantoea emend. as Pantoea ananas (Serrano 1928) comb. nov. and Pantoea stewartii (Smith 1898) comb. nov., respectively, and description of Pantoea stewartii subsp. indologenes subsp. nov. Int. J. Syst. Bacteriol. 43 (1993) 162-173
    • (1993) Int. J. Syst. Bacteriol. , vol.43 , pp. 162-173
    • Mergaert, J.1    Verdonck, L.2    Kersters, K.3
  • 31
    • 0030669211 scopus 로고    scopus 로고
    • rpoB Sequence analysis as a novel basis for bacterial identification
    • Mollet C., Drancourt M., and Raoult D. rpoB Sequence analysis as a novel basis for bacterial identification. Mol. Microbiol. 26 (1997) 1005-1011
    • (1997) Mol. Microbiol. , vol.26 , pp. 1005-1011
    • Mollet, C.1    Drancourt, M.2    Raoult, D.3
  • 32
    • 0030904848 scopus 로고    scopus 로고
    • Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population
    • Niemann S., Puehler A., Tichy H.-V., Simon R., and Selbitschka W. Evaluation of the resolving power of three different DNA fingerprinting methods to discriminate among isolates of a natural Rhizobium meliloti population. J. Appl. Microbiol. 82 (1997) 477-484
    • (1997) J. Appl. Microbiol. , vol.82 , pp. 477-484
    • Niemann, S.1    Puehler, A.2    Tichy, H.-V.3    Simon, R.4    Selbitschka, W.5
  • 34
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 35
    • 0034111025 scopus 로고    scopus 로고
    • Genetic and biochemical characterization of the pathway in Pantoea citrea leading to pink disease of pineapple
    • Pujol C.J., and Kado C.I. Genetic and biochemical characterization of the pathway in Pantoea citrea leading to pink disease of pineapple. J. Bacteriol. 182 (2000) 2230-2237
    • (2000) J. Bacteriol. , vol.182 , pp. 2230-2237
    • Pujol, C.J.1    Kado, C.I.2
  • 36
    • 0037263506 scopus 로고    scopus 로고
    • Isolation of a Pantoea dispersa-like strain from a 71-year-old woman with acute myeloid leukemia and multiple myeloma
    • Schmid H., Schubert S., Weber C., and Bogner J.R. Isolation of a Pantoea dispersa-like strain from a 71-year-old woman with acute myeloid leukemia and multiple myeloma. Infection 31 (2003) 66-67
    • (2003) Infection , vol.31 , pp. 66-67
    • Schmid, H.1    Schubert, S.2    Weber, C.3    Bogner, J.R.4
  • 37
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira H., and Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17 (2001) 1246-1247
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 38
    • 0032748472 scopus 로고    scopus 로고
    • The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae
    • Spröer C., Mendrock U., Swiderski J., Lang E., and Stackebrandt E. The phylogenetic position of Serratia, Buttiauxella and some other genera of the family Enterobacteriaceae. Int. J. Syst. Bacteriol. 49 (1999) 1433-1438
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 1433-1438
    • Spröer, C.1    Mendrock, U.2    Swiderski, J.3    Lang, E.4    Stackebrandt, E.5
  • 42
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX-Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX-Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25 (1997) 4876-4882
    • (1997) Nucl. Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 45
    • 0001279038 scopus 로고
    • Preparation of genomic DNA from bacteria
    • Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Struhl K. (Eds), Green Publishing and Wiley-Interscience, New York
    • Wilson K. Preparation of genomic DNA from bacteria. In: Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Struhl K. (Eds). Current Protocols in Molecular Biology (1987), Green Publishing and Wiley-Interscience, New York 2.4.1-2.4.5
    • (1987) Current Protocols in Molecular Biology
    • Wilson, K.1
  • 46
    • 34250704824 scopus 로고    scopus 로고
    • Relationships of plant pathogenic enterobacteria based on partial atpD, carA, and recA as individual and concatenated nucleotide and peptide sequences
    • Young J.M., and Park D.C. Relationships of plant pathogenic enterobacteria based on partial atpD, carA, and recA as individual and concatenated nucleotide and peptide sequences. Syst. Appl. Microbiol. 30 (2007) 343-354
    • (2007) Syst. Appl. Microbiol. , vol.30 , pp. 343-354
    • Young, J.M.1    Park, D.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.