메뉴 건너뛰기




Volumn 49, Issue 4, 1999, Pages 1531-1538

Identification of Enterobacteriaceae by partial sequencing of the gene encoding translation initiation factor 2

Author keywords

Enterobacteriaceae; infB; Phylogenetic analysis; Translation initiation factor 2

Indexed keywords

GUANOSINE TRIPHOSPHATE; INITIATION FACTOR 2;

EID: 0032706670     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-49-4-1531     Document Type: Article
Times cited : (41)

References (33)
  • 1
    • 0024093632 scopus 로고
    • Beta-subunit of ATP-synthase: A useful marker for studying the phylogenetic relationship of eubacteria
    • Amann, R., Ludwig, W. & Schleifer, K.-H. (1988). Beta-subunit of ATP-synthase: a useful marker for studying the phylogenetic relationship of eubacteria. J Gen Microbiol 134, 2815-2821.
    • (1988) J Gen Microbiol , vol.134 , pp. 2815-2821
    • Amann, R.1    Ludwig, W.2    Schleifer, K.-H.3
  • 3
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner, F. R., Plunkett, G. R., III, Bloch, C. A. & 14 other authors (1997). The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1474.
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1    Plunkett G.R. III2    Bloch, C.A.3
  • 4
    • 0030572374 scopus 로고    scopus 로고
    • Classification and identification of bacteria: Current approaches to an old problem. Overview of methods used in bacterial systematics
    • Busse, H. J., Denner, E. B. & Lubitz, W. (1996). Classification and identification of bacteria: current approaches to an old problem. Overview of methods used in bacterial systematics. J Biotechnol 47, 3-38.
    • (1996) J Biotechnol , vol.47 , pp. 3-38
    • Busse, H.J.1    Denner, E.B.2    Lubitz, W.3
  • 5
    • 0030813076 scopus 로고    scopus 로고
    • Phylogenetic relationships of Salmonella typhi and Salmonella typhimurium based on 16S rRNA sequence analysis
    • Chang, H. R., Loo, L. H., Jeyaseelan, K., Earnest, L. & Stackebrandt, E. (1997). Phylogenetic relationships of Salmonella typhi and Salmonella typhimurium based on 16S rRNA sequence analysis. Int J Syst Bacteriol 47, 1253-1254.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 1253-1254
    • Chang, H.R.1    Loo, L.H.2    Jeyaseelan, K.3    Earnest, L.4    Stackebrandt, E.5
  • 6
    • 0030024243 scopus 로고    scopus 로고
    • Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level
    • Cilia, V., Lafay, B. & Christen, R. (1996). Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level. Mol Biol Evol 13, 451-461.
    • (1996) Mol Biol Evol , vol.13 , pp. 451-461
    • Cilia, V.1    Lafay, B.2    Christen, R.3
  • 7
    • 0029027263 scopus 로고
    • Intraspecific variation in small-subunit rRNA sequences in GenBank: Why single sequences may not adequately represent prokaryotic taxa
    • Clayton, R. A., Sutton, G., Hinkle, P. S., Jr, Bult, C. & Fields, C. (1995). Intraspecific variation in small-subunit rRNA sequences in GenBank: why single sequences may not adequately represent prokaryotic taxa. Int J Syst Bacteriol 45, 595-599.
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 595-599
    • Clayton, R.A.1    Sutton, G.2    Hinkle P.S., Jr.3    Bult, C.4    Fields, C.5
  • 8
    • 0026760924 scopus 로고
    • The sequence of the gene encoding elongation factor Tu from Chlamydia trachomatis compared with those of other organisms
    • Cousineau, B., Cerpa, C., Lefebvre, J. & Cedergren, R. (1992). The sequence of the gene encoding elongation factor Tu from Chlamydia trachomatis compared with those of other organisms. Gene 120, 33-41.
    • (1992) Gene , vol.120 , pp. 33-41
    • Cousineau, B.1    Cerpa, C.2    Lefebvre, J.3    Cedergren, R.4
  • 9
    • 0002977684 scopus 로고
    • Enterobacteriaceae. Introduction and identification
    • Edited by P. R. Murray, E J. Baron, M. Pfaller, F. C. Tenover & R. H. Yolken. Washington, DC: American Society for Microbiology
    • Farmer, J. J. (1995). Enterobacteriaceae. Introduction and identification. In Manual of Clinical Microbiology. Edited by P. R. Murray, E J. Baron, M. Pfaller, F. C. Tenover & R. H. Yolken. Washington, DC: American Society for Microbiology.
    • (1995) Manual of Clinical Microbiology
    • Farmer, J.J.1
  • 10
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann, R. D., Adams, M. D., White, O. & 37 other authors (1995). Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3
  • 11
    • 0019639160 scopus 로고
    • Inversion between ribosomal RNA genes of Escherichia coli
    • Hill, C. W. & Harnish, B. W. (1981). Inversion between ribosomal RNA genes of Escherichia coli. Proc Natl Acad Sci USA 78, 7069-7072.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 7069-7072
    • Hill, C.W.1    Harnish, B.W.2
  • 12
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Edited by H. N. Munro New York: Academic Press
    • Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro New York: Academic Press.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 13
    • 0021798245 scopus 로고
    • Evolution of glutamine amidotransferase genes. Nucleotide sequences of the pabA genes from Salmonella typhimurium, Klebsiella aerogenes and Serratia marcescens
    • Kaplan, J. B., Merkel, W. K. & Nichols, B. P. (1985). Evolution of glutamine amidotransferase genes. Nucleotide sequences of the pabA genes from Salmonella typhimurium, Klebsiella aerogenes and Serratia marcescens. J Mol Biol 183, 327-340
    • (1985) J Mol Biol , vol.183 , pp. 327-340
    • Kaplan, J.B.1    Merkel, W.K.2    Nichols, B.P.3
  • 14
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1
  • 15
    • 0020639539 scopus 로고
    • Cloning of the nusA gene of Escherichia coli
    • Kurihara, T. & Nakamura, Y. (1983). Cloning of the nusA gene of Escherichia coli. Mol Gen Genet 190, 189-195
    • (1983) Mol Gen Genet , vol.190 , pp. 189-195
    • Kurihara, T.1    Nakamura, Y.2
  • 16
    • 0025744585 scopus 로고
    • A severely truncated form of translational initiation factor 2 supports growth of Escherichia coli
    • Laalami, S., Putzer, H., Plumbridge, J. A. & Grunberg-Manago, M. (1991). A severely truncated form of translational initiation factor 2 supports growth of Escherichia coli. J Mol Biol 220, 335-349.
    • (1991) J Mol Biol , vol.220 , pp. 335-349
    • Laalami, S.1    Putzer, H.2    Plumbridge, J.A.3    Grunberg-Manago, M.4
  • 17
    • 0028232085 scopus 로고
    • In vivo study of engineered G-domain mutants of Escherichia coli translation initiation factor IF2
    • Laalami, S., Timofeev, A. V., Putzer, H., Leautey, J. & Grunberg-Manago, M. (1994). In vivo study of engineered G-domain mutants of Escherichia coli translation initiation factor IF2. Mol Microbiol 11, 293-302.
    • (1994) Mol Microbiol , vol.11 , pp. 293-302
    • Laalami, S.1    Timofeev, A.V.2    Putzer, H.3    Leautey, J.4    Grunberg-Manago, M.5
  • 18
    • 0025777130 scopus 로고
    • Molecular and evolutionary relationships among enteric bacteria
    • Lawrence, J. G., Ochman, H. & Hartl, D. L. (1991). Molecular and evolutionary relationships among enteric bacteria. J Gen Microbiol 137, 1911-1921.
    • (1991) J Gen Microbiol , vol.137 , pp. 1911-1921
    • Lawrence, J.G.1    Ochman, H.2    Hartl, D.L.3
  • 19
    • 0027818659 scopus 로고
    • Phylogenetic relationships of Bacteria based on comparative sequence analysis of elongation factor Tu and ATP-synthase beta-subunit genes
    • Ludwig, W., Neumaier, J., Klugbauer, N. & 9 other authors (1993). Phylogenetic relationships of Bacteria based on comparative sequence analysis of elongation factor Tu and ATP-synthase beta-subunit genes. Antonie Leeuwenhoek 64, 285-305.
    • (1993) Antonie Leeuwenhoek , vol.64 , pp. 285-305
    • Ludwig, W.1    Neumaier, J.2    Klugbauer, N.3
  • 20
    • 0000174016 scopus 로고
    • Simplified tests for some amino acid decarboxylases and for the arginine dihydrolase system
    • Møller, V. (1955). Simplified tests for some amino acid decarboxylases and for the arginine dihydrolase system. Acta Pathol Microbiol Scand 36, 158-172.
    • (1955) Acta Pathol Microbiol Scand , vol.36 , pp. 158-172
    • Møller, V.1
  • 21
    • 0030669211 scopus 로고    scopus 로고
    • rpoB sequence analysis as a novel basis for bacterial identification
    • Mollet, C., Drancourt, M. & Raoult, D. (1997). rpoB sequence analysis as a novel basis for bacterial identification. Mol Microbiol 26, 1005-1011.
    • (1997) Mol Microbiol , vol.26 , pp. 1005-1011
    • Mollet, C.1    Drancourt, M.2    Raoult, D.3
  • 22
    • 0030870289 scopus 로고    scopus 로고
    • Discovery and classification of ecological diversity in the bacterial world: The role of DNA sequence data
    • Palys, T., Nakamura, L. K. & Cohan, F. M. (1997). Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. Int J Syst Bacteriol 47, 1145-1156.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 1145-1156
    • Palys, T.1    Nakamura, L.K.2    Cohan, F.M.3
  • 23
    • 0021112086 scopus 로고
    • Organization of the Escherichia coli chromosome around the genes for translation initiation factor IF2 (infB) and a transcription termination factor (nusA)
    • Plumbridge, J. A. & Springer, M. (1983). Organization of the Escherichia coli chromosome around the genes for translation initiation factor IF2 (infB) and a transcription termination factor (nusA). J Mol Biol 167, 227-243.
    • (1983) J Mol Biol , vol.167 , pp. 227-243
    • Plumbridge, J.A.1    Springer, M.2
  • 25
    • 0031974386 scopus 로고    scopus 로고
    • Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase
    • Poyart, C., Quesne, G., Coulon, S., Berche, P. & Trieu Cuot, P. (1998). Identification of streptococci to species level by sequencing the gene encoding the manganese-dependent superoxide dismutase J Clin Microbiol 36, 41-47.
    • (1998) J Clin Microbiol , vol.36 , pp. 41-47
    • Poyart, C.1    Quesne, G.2    Coulon, S.3    Berche, P.4    Trieu Cuot, P.5
  • 27
    • 0028239563 scopus 로고
    • Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences
    • Ruimy, R., Breittmayer, V., Elbaze, P., Lafay, B., Boussemart, O., Gauthier, M. & Christen, R. (1994). Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences. Int J Syst Bacteriol 44, 416-426.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 416-426
    • Ruimy, R.1    Breittmayer, V.2    Elbaze, P.3    Lafay, B.4    Boussemart, O.5    Gauthier, M.6    Christen, R.7
  • 28
    • 0021677209 scopus 로고
    • Sequence of the initiation factor IF2 gene: Unusual protein features and homologies with elongation factors
    • Sacerdot, C., Dessen, P., Hershey, J. W., Plumbridge, J. A. & Grunberg-Manago, M. (1984). Sequence of the initiation factor IF2 gene: unusual protein features and homologies with elongation factors. Proc Natl Acad Sci USA 81, 7787-7791.
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 7787-7791
    • Sacerdot, C.1    Dessen, P.2    Hershey, J.W.3    Plumbridge, J.A.4    Grunberg-Manago, M.5
  • 29
    • 0023796990 scopus 로고
    • The existence of two genes between infB and rpsO in the Escherichia coli genome: DNA sequencing and S1 nuclease mapping
    • Sands, J. F., Regnier, P., Cummings, H. S., Grunberg-Manago, M. & Hershey, J. W. (1988). The existence of two genes between infB and rpsO in the Escherichia coli genome: DNA sequencing and S1 nuclease mapping. Nucleic Acids Res 16, 10803-10816.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10803-10816
    • Sands, J.F.1    Regnier, P.2    Cummings, H.S.3    Grunberg-Manago, M.4    Hershey, J.W.5
  • 30
    • 0031449546 scopus 로고    scopus 로고
    • E. coli translation initiation factor IF2-an extremely conserved protein. Comparative sequence analysis of the infB gene in clinical isolates of E. coli
    • Steffensen, S. A., Poulsen, A. B., Mortensen, K. K. & Sperling-Petersen, H. U. (1997). E. coli translation initiation factor IF2-an extremely conserved protein. Comparative sequence analysis of the infB gene in clinical isolates of E. coli. FEBS Lett 419, 281-284.
    • (1997) FEBS Lett , vol.419 , pp. 281-284
    • Steffensen, S.A.1    Poulsen, A.B.2    Mortensen, K.K.3    Sperling-Petersen, H.U.4
  • 31
    • 0030968531 scopus 로고    scopus 로고
    • Subspecific differentiation of Mycobacterium avium complex strains by automated sequencing of a region of the gene (hsp65) encoding a 65-kilodalton heat shock protein
    • Swanson, D. S., Kapur, V., Stockbauer, K., Pan, X., Frothingham, R. & Musser, J. M. (1997). Subspecific differentiation of Mycobacterium avium complex strains by automated sequencing of a region of the gene (hsp65) encoding a 65-kilodalton heat shock protein. Int J Syst Bacteriol 47, 414-419.
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 414-419
    • Swanson, D.S.1    Kapur, V.2    Stockbauer, K.3    Pan, X.4    Frothingham, R.5    Musser, J.M.6
  • 33
    • 0026711010 scopus 로고
    • Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases
    • Tamura, K. (1992). Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases. Mol Biol Evol 9, 678-687.
    • (1992) Mol Biol Evol , vol.9 , pp. 678-687
    • Tamura, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.