DNA amplification on chemically structured chips in forensic STR analysis;Amplifikation von DNA auf chemisch strukturierten Chips in der forensischen STR-analyse

Archiv fur Kriminologie

Volumn 222, Issue 3-4, 2008, Pages 117-127

  Schmidt, Ulrike ^a   Proff, Carsten ^b   Schneider, Peter M ^c   Matt, Katja ^a   Sänger, Timo ^a   Zacher, Thomas ^d   Lutz Bonengel, Sabine ^a  

^a UNIVERSITY OF FREIBURG   (Germany)

^b Institut fur Blutgruppenforschung LGC GmbH   (Germany)

^c UNIVERSITY OF COLOGNE   (Germany)

^d C/o Institut für Rechtsmedizin ^*

Author keywords

Chemically structured chip; Low volume amplification; STR analysis

Indexed keywords

BUFFER;

ARTICLE; CHEMICAL STRUCTURE; DNA FINGERPRINTING; FORENSIC PATHOLOGY; GENE AMPLIFICATION; GENE NUMBER; SENSITIVITY ANALYSIS; SHORT TANDEM REPEAT;

BLOOD STAINS; HUMANS; MICROSATELLITE REPEATS; MOUTH MUCOSA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; PREDICTIVE VALUE OF TESTS;

EID: 56149108683     PISSN: 00039225     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (26)

1. Eichmann, C., Berger, B., Steinlechner, M., Parson, W.: Estimating the probability of identity in a random dog population using 15 highly polymorphic canine STR markers. Forensic Sci. Int. 151: 37-44 (2005)
2. Gaines, M. L., Wojtkiewicz, P. W., Valentine, J. A., Brown, C. L.: Reduced volume PCR amplification reactions using the AmpFlSTR® Profiler Plus™ Kit. J. Forensic Sci. 47: 1224-1237 (2002)
3. Gill, P., Whitaker, J., Flaxman, C., Brown, N., Buckleton, J.: An investigation of the rigor of interpretation rules for STRs derived from less than 100 pg of DNA. Forensic Sci. Int. 112: 17-40 (2000)
4. Gill, P., Curran, J., Elliot, K.: A graphical simulation model of the entire DNA process associated with the analysis of short tandem repeat loci. Nucleic Acids Res. 33: 632-643 (2005)
5. Heinrich, M., Felske-Zech, H., Brinkmann, B., Hohoff, C.: Characterisation of variant alleles in the STR systems D2S1338, D3S1358 and D19S433. Int. J. Legal Med. 119: 310-313 (2005)
6. Kloosterman, A. D., Kersbergen, P.: Efficacy and limits of genotyping low copy number (LCN) DNA samples by multiplex PCR of STR loci. J. Soc. Biol. 197: 351-359 (2003)
7. Kricka, L. J., Wilding, P.: Microchip PCR. Anal. Bioanal. Chem. 377: 820-825 (2003)
8. Leclair, B., Sgueglia, J. B., Wojtowicz, P. C., Juston, A. C., Fregeau, C. J., Four-ney, R. M.: STR DNA typing: increased sensitivity and efficient sample consumption using reduced PCR reaction volumes. J. Forensic Sci. 48: 1001-1013 (2003)
9. Lederer, T., Braunschweiger, G., Betz, P., Seidl, S.: Purification of STR-multiplex-amplified microsamples can enhance signal intensity in capillary electrophoresis. Int. J. Legal Med. 116: 165-169 (2002)
10. Liu, R. H., Yang, J., Lenigk, R., Bonanno, J., Grodzinski, P.: Self-contained, fully integrated biochip for sample preparation, polymerase chain reaction amplification, and DNA microarray detection. Anal. Chem. 76: 1824-1831 (2004)
11. Liu, R. H., Nguyen, T., Schwarzkopf, K., Fuji, H. S., Petrova, A., Siuda, T., Peyvan, K., Bizak, M., Danley, D., McShea, A.: Fully integrated miniature device for automated gene expression DNA microarray processing. Anal. Chem. 78: 1980-1986 (2006)
12. Mályusz, V., Poetsch, M., Simeoni, E., Schwark, T., Oehmichen, M., von Wurmb-Schwark, N.: Zur Problematik der Beurteilung von Geschwisterwahrscheinlichkeiten mittels genetischer Analyse. Arch. Kriminol. 218: 44-54 (2006)
13. Mitnik, L., Carey, L., Burger, R., Desmarais, S., Koutny, L., Wernet, O., Matsudaira, P., Ehrlich, D.: High-speed analysis of multiplexed short tandem repeats with an electrophoretic microdevice. Electrophoresis 23: 719-726 (2002)
14. Patzelt, D.: History of forensic serology and molecular genetics in the sphere of activity of the German Society for Forensic Medicine. Forensic Sci. Int. 144: 185-191 (2004)
15. Proff, C., Rothschild, M. A., Schneider, P. M.: Low-volume PCR (LV-PCR) for STR typing of forensic casework samples. In: Amorim, A., Corte-Real, F., Morling, N. (Eds.): Progress in Forensic Genetics, Vol. 11. Elsevier (Amsterdam), pp. 645-647 (2006)
16. rd edn., Cold Spring Harbor Laboratory Press (Cold Spring Harbor, New York), 2001
17. Schmidt, U., Meier, N., Weisser, H.-J., Knoblich, A., Graw, M.: Anwendungsmöglichkeiten von Y-chromosomalen STRs bei der Untersuchung von Abrasionsmaterial. Arch. Kriminol. 211: 42-47 (2003)
18. Schmidt, U., Lutz-Bonengel, S., Weisser, H.-J., Sänger, T., Pollak, S., Schön, U., Zacher, T., Mann, W.: Low-volume amplification on chemically structured chips using the PowerPlex®16 DNA amplification kit. Int. J. Legal Med. 120: 42-48 (2006)
19. Strom, C. M., Rechitsky, S.: Use of nested PCR to identify charred human remains and minute amounts of blood. J. Forensic Sci. 43: 696-700 (1998)
20. Tamaki, K., Jeffreys, A. J.: Human tandem repeat sequences in forensic DNA typing. Legal Med. 7: 244-250 (2005)
21. Urban, C., Gruber, F., Kundi, M., Falkner, F. G., Dorner, F., Hammerle, T.: A systematic and quantitative analysis of PCR template contaminations. J. Forensic Sci. 45: 1307-1311 (2000)
22. Walsh, P. S., Metzger, D. A., Higuchi, R.: Chelex® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10: 506-513 (1991)
23. Walsh, S. J.: Recent advances in forensic genetics. Expert Rev. Mol. Diagn. 4: 31-40 (2004)
24. Wiegand, P., Kleiber, M.: Less is more - length reduction of STR amplicons using re-designed primers. Int. J. Legal Med. 114: 269-273 (2001)
25. Wiegand, P., Klein, R., Braunschweiger, G., Hohoff, C., Brinkmann, B.: Short amplicon STR multiplex for stain typing. Int. J. Legal Med. 120: 160-164 (2006)
26. Yang, D. Y., Eng, B., Saunders, S. R.: Hypersensitive PCR, ancient human mtDNA, and contamination. Hum. Biol. 75: 355-364 (2003)