-
1
-
-
0030754921
-
Distribution of both lengths and 5′terminal nucleotides of mammalian pre-tRNA 3′trailers reflects properties of 3′ processing endoribonuclease
-
Nashimoto M. Distribution of both lengths and 5′terminal nucleotides of mammalian pre-tRNA 3′trailers reflects properties of 3′ processing endoribonuclease. Nucleic Acids Res. 25 (1997) 1148-1155
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1148-1155
-
-
Nashimoto, M.1
-
2
-
-
0038750928
-
A candidate prostate cancer susceptibility gene encodes tRNA 3′ processing endoribonuclease
-
Takaku H., Minagawa A., Takagi M., and Nashimoto M. A candidate prostate cancer susceptibility gene encodes tRNA 3′ processing endoribonuclease. Nucleic Acids Res. 31 (2003) 2272-2278
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2272-2278
-
-
Takaku, H.1
Minagawa, A.2
Takagi, M.3
Nashimoto, M.4
-
3
-
-
20444395097
-
Residues in the conserved His domain of fruit fly tRNase Z that function in catalysis are not involved in substrate recognition or binding
-
Zareen N., Yan H., Hopkinson A., and Levinger L. Residues in the conserved His domain of fruit fly tRNase Z that function in catalysis are not involved in substrate recognition or binding. J. Mol. Biol. 350 (2005) 189-199
-
(2005)
J. Mol. Biol.
, vol.350
, pp. 189-199
-
-
Zareen, N.1
Yan, H.2
Hopkinson, A.3
Levinger, L.4
-
4
-
-
29044449835
-
The tRNase Z family of proteins: physiological functions, substrate specificity and structural properties
-
Vogel A., Schilling O., Spath B., and Marchfelder A. The tRNase Z family of proteins: physiological functions, substrate specificity and structural properties. Biol. Chem. 386 (2005) 1253-1264
-
(2005)
Biol. Chem.
, vol.386
, pp. 1253-1264
-
-
Vogel, A.1
Schilling, O.2
Spath, B.3
Marchfelder, A.4
-
5
-
-
33646402107
-
Substrate recognition ability differs among various prokaryotic tRNase Zs
-
Minagawa A., Takaku H., Shibata H.S., Ishii R., Takagi M., Yokoyama S., and Nashimoto M. Substrate recognition ability differs among various prokaryotic tRNase Zs. Biochem. Biophys. Res. Commun. 345 (2006) 385-393
-
(2006)
Biochem. Biophys. Res. Commun.
, vol.345
, pp. 385-393
-
-
Minagawa, A.1
Takaku, H.2
Shibata, H.S.3
Ishii, R.4
Takagi, M.5
Yokoyama, S.6
Nashimoto, M.7
-
6
-
-
2442616184
-
A novel endonucleolytic mechanism to generate the CCA 3′termini of tRNA molecules in Thermotoga maritima
-
Minagawa A., Takaku H., Takagi M., and Nashimoto M. A novel endonucleolytic mechanism to generate the CCA 3′termini of tRNA molecules in Thermotoga maritima. J. Biol. Chem. 279 (2004) 15688-15697
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 15688-15697
-
-
Minagawa, A.1
Takaku, H.2
Takagi, M.3
Nashimoto, M.4
-
7
-
-
0035135523
-
A candidate prostate cancer susceptibility gene at chromosome 17p
-
Tavtigian S.V., Simard J., Teng D.H., Abtin V., Baumgard M., Beck A., et al. A candidate prostate cancer susceptibility gene at chromosome 17p. Nature Genet. 27 (2001) 172-180
-
(2001)
Nature Genet.
, vol.27
, pp. 172-180
-
-
Tavtigian, S.V.1
Simard, J.2
Teng, D.H.3
Abtin, V.4
Baumgard, M.5
Beck, A.6
-
8
-
-
4243087008
-
The N-terminal half domain of the long form of tRNase Z is required for the RNase 65 activity
-
Takaku H., Minagawa A., Takagi M., and Nashimoto M. The N-terminal half domain of the long form of tRNase Z is required for the RNase 65 activity. Nucleic Acids Res. 32 (2004) 4429-4438
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 4429-4438
-
-
Takaku, H.1
Minagawa, A.2
Takagi, M.3
Nashimoto, M.4
-
9
-
-
14144251951
-
Structural basis for substrate binding, cleavage and allostery in the tRNA maturase RNase Z
-
de la Sierra-Gallay I.L., Pellegrini O., and Condon C. Structural basis for substrate binding, cleavage and allostery in the tRNA maturase RNase Z. Nature 433 (2005) 657-661
-
(2005)
Nature
, vol.433
, pp. 657-661
-
-
de la Sierra-Gallay, I.L.1
Pellegrini, O.2
Condon, C.3
-
10
-
-
17144378531
-
Crystal structure of the tRNA 3′processing endoribonuclease tRNase Z from Thermotoga maritima
-
Ishii R., Minagawa A., Takaku H., Takagi M., Nashimoto M., and Yokoyama S. Crystal structure of the tRNA 3′processing endoribonuclease tRNase Z from Thermotoga maritima. J. Biol. Chem. 280 (2005) 14138-14144
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 14138-14144
-
-
Ishii, R.1
Minagawa, A.2
Takaku, H.3
Takagi, M.4
Nashimoto, M.5
Yokoyama, S.6
-
11
-
-
32444437167
-
The crystal structure of the zinc phosphodiesterase from Escherichia coli provides insight into function and cooperativity of tRNase Z-family proteins
-
Kostelecky B., Pohl E., Vogel A., Schilling O., and Meyer-Klaucke W. The crystal structure of the zinc phosphodiesterase from Escherichia coli provides insight into function and cooperativity of tRNase Z-family proteins. J. Bacteriol. 188 (2006)
-
(2006)
J. Bacteriol.
, vol.188
-
-
Kostelecky, B.1
Pohl, E.2
Vogel, A.3
Schilling, O.4
Meyer-Klaucke, W.5
-
12
-
-
34547634674
-
The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes
-
Ishii R., Minagawa A., Takaku H., Takagi M., Nashimoto M., and Yokoyama S. The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes. Acta Cryst. F63 (2007) 637-641
-
(2007)
Acta Cryst.
, vol.F63
, pp. 637-641
-
-
Ishii, R.1
Minagawa, A.2
Takaku, H.3
Takagi, M.4
Nashimoto, M.5
Yokoyama, S.6
-
13
-
-
0033520073
-
On the mechanism of the metallo-β-lactamase from Bacteroides fragilis
-
Wang Z., Fast W., and Benkovic S.J. On the mechanism of the metallo-β-lactamase from Bacteroides fragilis. Biochemistry 38 (1999) 10013-10023
-
(1999)
Biochemistry
, vol.38
, pp. 10013-10023
-
-
Wang, Z.1
Fast, W.2
Benkovic, S.J.3
-
14
-
-
3142738641
-
Identification of metal binding residues for the binuclear zinc phosphodiesterase reveals identical coordination as glyoxalase II
-
Vogel A., Schilling O., and Meyer-Klaucke W. Identification of metal binding residues for the binuclear zinc phosphodiesterase reveals identical coordination as glyoxalase II. Biochemistry 43 (2004) 10379-10386
-
(2004)
Biochemistry
, vol.43
, pp. 10379-10386
-
-
Vogel, A.1
Schilling, O.2
Meyer-Klaucke, W.3
-
15
-
-
0347093408
-
Metal binding Asp-120 in metallo-β-lactamase L1 from Stenotrophomonas maltophilia plays a crucial role in catalysis
-
Garrity J.D., Carenbauer A.L., Herron L.R., and Crowder M.W. Metal binding Asp-120 in metallo-β-lactamase L1 from Stenotrophomonas maltophilia plays a crucial role in catalysis. J. Biol. Chem. 279 (2004) 920-927
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 920-927
-
-
Garrity, J.D.1
Carenbauer, A.L.2
Herron, L.R.3
Crowder, M.W.4
-
16
-
-
23344445580
-
Crystal structure of phosphorylcholine esterase domain of the virulence factor choline-binding protein E from Streptococcus pneumoniae: new structural features among the metallo-β-lactamase superfamily
-
Garau G., Lemaire D., Vernet T., Dideberg O., and Di Guilmi A.M. Crystal structure of phosphorylcholine esterase domain of the virulence factor choline-binding protein E from Streptococcus pneumoniae: new structural features among the metallo-β-lactamase superfamily. J. Biol. Chem. 280 (2005) 28591-28600
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 28591-28600
-
-
Garau, G.1
Lemaire, D.2
Vernet, T.3
Dideberg, O.4
Di Guilmi, A.M.5
-
17
-
-
33845902048
-
Polyadenylation factor CPSF-73 is the pre-mRNA 3′-end-processing endonuclease
-
Mandel C.R., Kaneko S., Zhang H., Gebauer D., Vethantham V., Manley J.L., and Tong L. Polyadenylation factor CPSF-73 is the pre-mRNA 3′-end-processing endonuclease. Nature 444 (2006) 953-956
-
(2006)
Nature
, vol.444
, pp. 953-956
-
-
Mandel, C.R.1
Kaneko, S.2
Zhang, H.3
Gebauer, D.4
Vethantham, V.5
Manley, J.L.6
Tong, L.7
-
19
-
-
0029854010
-
Specific cleavage of target RNAs from HIV-1 with 5′ half tRNA by mammalian tRNA 3′ processing endoribonuclease
-
Nashimoto M. Specific cleavage of target RNAs from HIV-1 with 5′ half tRNA by mammalian tRNA 3′ processing endoribonuclease. RNA 2 (1996) 523-534
-
(1996)
RNA
, vol.2
, pp. 523-534
-
-
Nashimoto, M.1
-
20
-
-
0032103908
-
RNA heptamers that direct RNA cleavage by mammalian tRNA 3′ processing endoribonuclease
-
Nashimoto M., Geary S., Tamura M., and Kaspar R. RNA heptamers that direct RNA cleavage by mammalian tRNA 3′ processing endoribonuclease. Nucleic Acids Res. 26 (1998) 2565-2571
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2565-2571
-
-
Nashimoto, M.1
Geary, S.2
Tamura, M.3
Kaspar, R.4
-
21
-
-
0035420191
-
Role of HPC2/ELAC2 in hereditary prostate cancer
-
Wang L., McDonnell S.K., Elkins D.A., Slager S.L., Christensen E., Marks A.F., et al. Role of HPC2/ELAC2 in hereditary prostate cancer. Cancer Res. 61 (2001) 6494-6499
-
(2001)
Cancer Res.
, vol.61
, pp. 6494-6499
-
-
Wang, L.1
McDonnell, S.K.2
Elkins, D.A.3
Slager, S.L.4
Christensen, E.5
Marks, A.F.6
-
22
-
-
4444368106
-
Structure of primate and rodent orthologs of the prostate cancer susceptibility gene ELAC2
-
Dumont M., Frank D., Moisan A.M., Tranchant M., Soucy P., Breton R., Labrie F., Tavtigian S.V., and Simard J. Structure of primate and rodent orthologs of the prostate cancer susceptibility gene ELAC2. Biochim. Biophys. Acta 1679 (2004) 230-247
-
(2004)
Biochim. Biophys. Acta
, vol.1679
, pp. 230-247
-
-
Dumont, M.1
Frank, D.2
Moisan, A.M.3
Tranchant, M.4
Soucy, P.5
Breton, R.6
Labrie, F.7
Tavtigian, S.V.8
Simard, J.9
-
23
-
-
33646341197
-
Unstructured RNA is a substrate for tRNase Z
-
Shibata H.S., Minagawa A., Takaku H., Takagi M., and Nashimoto M. Unstructured RNA is a substrate for tRNase Z. Biochemistry 45 (2006) 5486-5492
-
(2006)
Biochemistry
, vol.45
, pp. 5486-5492
-
-
Shibata, H.S.1
Minagawa, A.2
Takaku, H.3
Takagi, M.4
Nashimoto, M.5
-
24
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho S.N., Hunt H.D., Horton R.M., Pullen J.K., and Pease L.R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77 (1989) 51-59
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
25
-
-
0035812598
-
The inhibitory effect of the autoantigen La on in vitro 3′ processing of mammalian precursor tRNAs
-
Nashimoto M., Nashimoto C., Tamura M., Kaspar R.L., and Ochi K. The inhibitory effect of the autoantigen La on in vitro 3′ processing of mammalian precursor tRNAs. J. Mol. Biol. 312 (2001) 975-984
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 975-984
-
-
Nashimoto, M.1
Nashimoto, C.2
Tamura, M.3
Kaspar, R.L.4
Ochi, K.5
-
26
-
-
33646872034
-
Residues in two homology blocks on the amino side of the tRNase Z His domain contribute unexpectedly to pre-tRNA 3′ end processing
-
Zareen N., Hopkinson A., and Levinger L. Residues in two homology blocks on the amino side of the tRNase Z His domain contribute unexpectedly to pre-tRNA 3′ end processing. RNA 12 (2006) 1104-1115
-
(2006)
RNA
, vol.12
, pp. 1104-1115
-
-
Zareen, N.1
Hopkinson, A.2
Levinger, L.3
-
27
-
-
34548090500
-
tRNase Z catalysis and conserved residues on the carboxy side of the His cluster
-
Karkashon S., Hopkinson A., and Levinger L. tRNase Z catalysis and conserved residues on the carboxy side of the His cluster. Biochemistry 46 (2007) 9380-9387
-
(2007)
Biochemistry
, vol.46
, pp. 9380-9387
-
-
Karkashon, S.1
Hopkinson, A.2
Levinger, L.3
-
28
-
-
18044386151
-
The missense mutations in the candidate prostate cancer gene ELAC2 do not alter enzymatic properties of its product
-
Minagawa A., Takaku H., Takagi M., and Nashimoto M. The missense mutations in the candidate prostate cancer gene ELAC2 do not alter enzymatic properties of its product. Cancer Lett. 222 (2004) 211-215
-
(2004)
Cancer Lett.
, vol.222
, pp. 211-215
-
-
Minagawa, A.1
Takaku, H.2
Takagi, M.3
Nashimoto, M.4
-
29
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
30
-
-
0032961270
-
ESPript: analysis of multiple sequence alignments in PostScript
-
Gouet P., Courcelle E., Stuart D.I., and Metoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 15 (1999) 305-308
-
(1999)
Bioinformatics
, vol.15
, pp. 305-308
-
-
Gouet, P.1
Courcelle, E.2
Stuart, D.I.3
Metoz, F.4
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