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Volumn 641, Issue , 2008, Pages 72-87

Oscillatory expression of hes family transcription factors: Insights from mathematical modelling

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TRANSCRIPTION FACTOR HES 1; TRANSCRIPTION FACTOR HES 5; BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; HOMEODOMAIN PROTEIN;

EID: 55949132637     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-0-387-09794-7_6     Document Type: Review
Times cited : (3)

References (48)
  • 1
    • 0034676456 scopus 로고    scopus 로고
    • Feedback control of intercellular signalling in development
    • Freeman M. Feedback control of intercellular signalling in development. Nature 2000; 408:313-319.
    • (2000) Nature , vol.408 , pp. 313-319
    • Freeman, M.1
  • 2
    • 0021171678 scopus 로고
    • Models of genetic control by repression with time delays and spatial effects
    • Mahaffy JM, Pao CY. Models of genetic control by repression with time delays and spatial effects. J Math Bioi 1984; 20:39-57.
    • (1984) J Math Bioi , vol.20 , pp. 39-57
    • Mahaffy, J.M.1    Pao, C.Y.2
  • 3
    • 38249027114 scopus 로고
    • Genetic control models with diffusion and delays
    • Mahaffy JM. Genetic control models with diffusion and delays. Math Biosci 1988; 90:519-533.
    • (1988) Math Biosci , vol.90 , pp. 519-533
    • Mahaffy, J.M.1
  • 6
    • 0037044575 scopus 로고    scopus 로고
    • The h:B-NF-KB signaling module: Temporal control and selective gene activation
    • Hoffmann A, Levchenko A, Scott ML et al. The h:B-NF-KB signaling module: Temporal control and selective gene activation. Science 2002; 298:1241-1245.
    • (2002) Science , vol.298 , pp. 1241-1245
    • Hoffmann, A.1    Levchenko, A.2    Scott, M.L.3
  • 7
    • 7444254365 scopus 로고    scopus 로고
    • Oscillations in NF-KB signaling control the dynamics of gene expression
    • Nelson DE, Ihekwaba AEC, Elliott M et al. Oscillations in NF-KB signaling control the dynamics of gene expression. Science 2004; 306:704-708.
    • (2004) Science , vol.306 , pp. 704-708
    • Nelson, D.E.1    Ihekwaba, A.E.C.2    Elliott, M.3
  • 8
    • 0034633702 scopus 로고    scopus 로고
    • Generation of oscillations by the p53-Mdm2 feedback loop: A theoretical and experimental study
    • Lev Bar-Or R, Maya R, Segel LA et al. Generation of oscillations by the p53-Mdm2 feedback loop: A theoretical and experimental study. Proc Nat! Acad Sci USA 2000; 97:11250-11255.
    • (2000) Proc Nat! Acad Sci USA , vol.97 , pp. 11250-11255
    • Lev Bar-Or, R.1    Maya, R.2    Segel, L.A.3
  • 9
    • 0842332406 scopus 로고    scopus 로고
    • Dynamics of the p53-Mdm2 feedback loop in individual cells
    • Lahav G, Rosenfeld N, Sigal A et al. Dynamics of the p53-Mdm2 feedback loop in individual cells. Nat Genet 2004; 36:147-150.
    • (2004) Nat Genet , vol.36 , pp. 147-150
    • Lahav, G.1    Rosenfeld, N.2    Sigal, A.3
  • 11
    • 0037174669 scopus 로고    scopus 로고
    • Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop
    • Hirata H, Yoshiura S, Ohrsuka T et al. Oscillatory expression of the bHLH factor Hes1 regulated by a negative feedback loop. Science 2002; 298:840-843.
    • (2002) Science , vol.298 , pp. 840-843
    • Hirata, H.1    Yoshiura, S.2    Ohrsuka, T.3
  • 12
    • 31944447678 scopus 로고    scopus 로고
    • Real-time imaging of the somite segmentation clock: Revelation of unstable oscillators in the individual presomitic mesoderm cells
    • Masamizu Y, Ohtsuka, T, Takashima Y et al. Real-time imaging of the somite segmentation clock: Revelation of unstable oscillators in the individual presomitic mesoderm cells. Proc Nat! Acad Sci USA 2006; 103:1313-1318.
    • (2006) Proc Nat! Acad Sci USA , vol.103 , pp. 1313-1318
    • Masamizu, Y.1    Ohtsuka, T.2    Takashima, Y.3
  • 13
    • 34247125714 scopus 로고    scopus 로고
    • Identification of oscillatory genes in somitogenesis from functional genomic analysis of a human mesenchymal stem cell model
    • William DA, Saitta B, Gibson JD et al. Identification of oscillatory genes in somitogenesis from functional genomic analysis of a human mesenchymal stem cell model. Dev Bioi 2007; 305:172-186.
    • (2007) Dev Bioi , vol.305 , pp. 172-186
    • William, D.A.1    Saitta, B.2    Gibson, J.D.3
  • 14
    • 0031008221 scopus 로고    scopus 로고
    • Basic mechanisms of transcript elongation and irs regulation
    • Uptain SM, Kane CM, Chamberlin MJ. Basic mechanisms of transcript elongation and irs regulation. Annu Rev Biochem 1997; 66:117-172.
    • (1997) Annu Rev Biochem , vol.66 , pp. 117-172
    • Uptain, S.M.1    Kane, C.M.2    Chamberlin, M.J.3
  • 16
    • 0036784630 scopus 로고    scopus 로고
    • Audibert A, Wei! D, Dautry F. In vitro kinetics of mRNA splicing and transport in mammalian cells. Mol Cell Bioi 2002; 22:6706-6718.
    • Audibert A, Wei! D, Dautry F. In vitro kinetics of mRNA splicing and transport in mammalian cells. Mol Cell Bioi 2002; 22:6706-6718.
  • 17
    • 0004238344 scopus 로고    scopus 로고
    • Oxford: Oxford Universiry Press
    • Lewin B. Genes VII. Oxford: Oxford Universiry Press, 2000.
    • (2000) Genes VII
    • Lewin, B.1
  • 18
    • 0028837312 scopus 로고    scopus 로고
    • Tennyson CN, K1amut HJ, Worton RG. The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced. Nat Genet 1995; 9:184-190.
    • Tennyson CN, K1amut HJ, Worton RG. The human dystrophin gene requires 16 hours to be transcribed and is cotranscriptionally spliced. Nat Genet 1995; 9:184-190.
  • 20
    • 0012907951 scopus 로고    scopus 로고
    • Time delay is a key to apoptosis induction in the p53 network
    • Tiana G, Jensen MH, Sneppen K. Time delay is a key to apoptosis induction in the p53 network. Eur Phys J B 2002; 29:135-140.
    • (2002) Eur Phys J B , vol.29 , pp. 135-140
    • Tiana, G.1    Jensen, M.H.2    Sneppen, K.3
  • 21
    • 0037464494 scopus 로고    scopus 로고
    • Sustained oscillations and time delays in gene expression of protein Hes1
    • Jensen MH, Sneppen K, Tiana G. Sustained oscillations and time delays in gene expression of protein Hes1. FEBS Lett 2003; 541:176-177.
    • (2003) FEBS Lett , vol.541 , pp. 176-177
    • Jensen, M.H.1    Sneppen, K.2    Tiana, G.3
  • 22
    • 0043180477 scopus 로고    scopus 로고
    • Oscillatory expression of Hes1, p53, and NF-KB driven by transcriptional time delays
    • Monk NAM. Oscillatory expression of Hes1, p53, and NF-KB driven by transcriptional time delays. Curr BioI 2003; 13:1409-1413.
    • (2003) Curr BioI , vol.13 , pp. 1409-1413
    • Monk, N.A.M.1
  • 23
    • 85047699421 scopus 로고    scopus 로고
    • Vertebrate hairy and Enhancer of split related proteins: Transcriptional repressors regulating cellular differentiation and embryonic patterning
    • Davis RL, Turner DL. Vertebrate hairy and Enhancer of split related proteins: Transcriptional repressors regulating cellular differentiation and embryonic patterning. Oncogene 2001; 20:8342-8357.
    • (2001) Oncogene , vol.20 , pp. 8342-8357
    • Davis, R.L.1    Turner, D.L.2
  • 24
    • 34248139757 scopus 로고    scopus 로고
    • The Hes gene family: Repressors and oscillators that orchestrate embryogenesis
    • Kageyama R, Ohrsuka T, Kobayashi T. The Hes gene family: Repressors and oscillators that orchestrate embryogenesis. Development 2007; 134:1243-1251.
    • (2007) Development , vol.134 , pp. 1243-1251
    • Kageyama, R.1    Ohrsuka, T.2    Kobayashi, T.3
  • 25
    • 0030840351 scopus 로고    scopus 로고
    • Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis
    • Palmeirim I, Henrique D, Ish-Horowicz D et al. Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis. Cell 1997; 91:639-648.
    • (1997) Cell , vol.91 , pp. 639-648
    • Palmeirim, I.1    Henrique, D.2    Ish-Horowicz, D.3
  • 26
    • 0035887251 scopus 로고    scopus 로고
    • Dynamic expression and essential functions of Hes7 in somite segmentation
    • Bessho Y, Sakata R, Komatsu S et al. Dynamic expression and essential functions of Hes7 in somite segmentation. Genes Dev 2001; 15:2642-2647.
    • (2001) Genes Dev , vol.15 , pp. 2642-2647
    • Bessho, Y.1    Sakata, R.2    Komatsu, S.3
  • 27
    • 0038046204 scopus 로고    scopus 로고
    • Bessho Y, Hirata H, Masamizu Yet al. Periodic repression by the bHLH factor Hes7 is an essential mechanism for the somite segmentation clock. Genes Dev 2003; 17:1451-1456.
    • Bessho Y, Hirata H, Masamizu Yet al. Periodic repression by the bHLH factor Hes7 is an essential mechanism for the somite segmentation clock. Genes Dev 2003; 17:1451-1456.
  • 28
    • 3042842911 scopus 로고    scopus 로고
    • Instabiliry of Hes7 protein is crucial for the somite segmentation clock
    • Hirata H, Bessho Y, Kokubu H et al. Instabiliry of Hes7 protein is crucial for the somite segmentation clock. Nat Genet 2004; 36:750-754.
    • (2004) Nat Genet , vol.36 , pp. 750-754
    • Hirata, H.1    Bessho, Y.2    Kokubu, H.3
  • 29
    • 0036332729 scopus 로고    scopus 로고
    • Her! and the Notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis
    • Holley SA, Julich D, Rauch GJ et al. Her! and the Notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis. Development 2002; 129:1175-1183.
    • (2002) Development , vol.129 , pp. 1175-1183
    • Holley, S.A.1    Julich, D.2    Rauch, G.J.3
  • 30
    • 0035984002 scopus 로고    scopus 로고
    • Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signalling pathway in the formation of anterior segmental boundaries in the zebrafish
    • Oates AC, Ho RK. Hairy/E(spl)-related (Her) genes are central components of the segmentation oscillator and display redundancy with the Delta/Notch signalling pathway in the formation of anterior segmental boundaries in the zebrafish. Development 2002; 129:2929-2946.
    • (2002) Development , vol.129 , pp. 2929-2946
    • Oates, A.C.1    Ho, R.K.2
  • 31
    • 2342420268 scopus 로고    scopus 로고
    • The zebrafish Hairy/Enhancer-of-split- related genes, her6 and her4, are required to maintain the coordination of cyclic gene expression in the presomitic mesoderm
    • Pasini A, Jiang YJ, Wilkinson DG. The zebrafish Hairy/Enhancer-of-split- related genes, her6 and her4, are required to maintain the coordination of cyclic gene expression in the presomitic mesoderm. Development 2004; 131:1529-1541.
    • (2004) Development , vol.131 , pp. 1529-1541
    • Pasini, A.1    Jiang, Y.J.2    Wilkinson, D.G.3
  • 33
    • 0028111932 scopus 로고    scopus 로고
    • Takebayashi K, Sasai Y, Sakai Yet al. Structure, chromosomal locus, and promoter analysis of the gene encoding the mouse helix-loop-helix factor Hes-1. J Bioi Chern 1994; 269:5150-5156.
    • Takebayashi K, Sasai Y, Sakai Yet al. Structure, chromosomal locus, and promoter analysis of the gene encoding the mouse helix-loop-helix factor Hes-1. J Bioi Chern 1994; 269:5150-5156.
  • 34
    • 33845444174 scopus 로고    scopus 로고
    • Dequ6mt ML, Glynn E, Gaudenz K et aI. A complex oscillating network of signaling genes underlies the mouse segmentation clock. Science 2006; 314:1595-1598.
    • Dequ6mt ML, Glynn E, Gaudenz K et aI. A complex oscillating network of signaling genes underlies the mouse segmentation clock. Science 2006; 314:1595-1598.
  • 35
    • 0041677612 scopus 로고    scopus 로고
    • Autoinhibition with transcriptional delay: A simple mechanism for the zebrafish somitogenesis oscillator
    • Lewis ]. Autoinhibition with transcriptional delay: A simple mechanism for the zebrafish somitogenesis oscillator. Curr BioI 2003; 13:1398-1408.
    • (2003) Curr BioI , vol.13 , pp. 1398-1408
    • Lewis1
  • 36
    • 85196196396 scopus 로고    scopus 로고
    • Hopf bifurcation in a DDE model of gene expression
    • doi:10.1016/j.cnsns.2006.05.00l
    • Verdugo A, Rand R. Hopf bifurcation in a DDE model of gene expression. Commun Nonlinear Sci Numer Simulat 2006, (doi:10.1016/j.cnsns.2006.05.00l).
    • (2006) Commun Nonlinear Sci Numer Simulat
    • Verdugo, A.1    Rand, R.2
  • 37
    • 22144443131 scopus 로고    scopus 로고
    • Nonlinear protein degradation and the function of genetic circuits
    • Buchler NE, Gerland U, Hwa T. Nonlinear protein degradation and the function of genetic circuits. Proc Nat! Acad Sci USA 2005; 102:9559-9564.
    • (2005) Proc Nat! Acad Sci USA , vol.102 , pp. 9559-9564
    • Buchler, N.E.1    Gerland, U.2    Hwa, T.3
  • 38
    • 0036136306 scopus 로고    scopus 로고
    • Role for Hesl-induced phosphoryllation in Groucho-mediated transctiptional repression
    • Nuthall HN, Husain ], McLarren KW et aI. Role for Hesl-induced phosphoryllation in Groucho-mediated transctiptional repression. Mol Cell Bioi 2002; 22:389-399.
    • (2002) Mol Cell Bioi , vol.22 , pp. 389-399
    • Nuthall, H.N.1    Husain2    McLarren, K.W.3    aI4
  • 39
    • 33646507312 scopus 로고    scopus 로고
    • Modelling transcriptional feedback loops: The role of Gro/TLEI in Hesl oscillations
    • Bernard S, Cajavec B, Pujo-Menjouet L et aI. Modelling transcriptional feedback loops: The role of Gro/TLEI in Hesl oscillations. Phil Trans R Soc A 2006; 364:1155-1170.
    • (2006) Phil Trans R Soc A , vol.364 , pp. 1155-1170
    • Bernard, S.1    Cajavec, B.2    Pujo-Menjouet, L.3    aI4
  • 40
    • 33646235160 scopus 로고    scopus 로고
    • Number of active transcription factor binding sites is essential for the Hes7 oscillator
    • Zeiser S, Liebscher HV, Tiedemann H et aI. Number of active transcription factor binding sites is essential for the Hes7 oscillator. Theor Bioi Med Modelling 2006; 3: 11.
    • (2006) Theor Bioi Med Modelling , vol.3 , pp. 11
    • Zeiser, S.1    Liebscher, H.V.2    Tiedemann, H.3    aI4
  • 41
    • 33847316015 scopus 로고    scopus 로고
    • Repressor dimerization in the zebrafish somitogenesis clock
    • Cinquin O. Repressor dimerization in the zebrafish somitogenesis clock. PLoS Comput Bioi 2007; 3(2):e32.
    • (2007) PLoS Comput Bioi , vol.3 , Issue.2
    • Cinquin, O.1
  • 42
    • 64749107709 scopus 로고    scopus 로고
    • Nagy ]D, Newman T] et aI. Amplified biochemical oscillations in cellular systems
    • in press
    • McKane A], Nagy ]D, Newman T] et aI. Amplified biochemical oscillations in cellular systems. J Stat Phys 2007, (in press).
    • (2007) J Stat Phys
    • McKane, A.1
  • 43
    • 33749336242 scopus 로고    scopus 로고
    • Oscillatory regulation of Hesl: Discrete stochastic delay modelling and simulation
    • Barrio M, Burrage K, Leier A et aI. Oscillatory regulation of Hesl: Discrete stochastic delay modelling and simulation. PLoS Comput BioI 2006; 2(9):e117.
    • (2006) PLoS Comput BioI , vol.2 , Issue.9
    • Barrio, M.1    Burrage, K.2    Leier, A.3    aI4
  • 44
    • 33645429016 scopus 로고    scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie DT. Exact stochastic simulation of coupled chemical reactions. J Phys Chern 1997; 81:2340-236l.
    • (1997) J Phys Chern , vol.81
    • Gillespie, D.T.1
  • 45
    • 33745000977 scopus 로고    scopus 로고
    • Noise-tesistant and synchronized oscillation of the segmentation clock
    • Horikawa K, Ishimatsu K, Yoshimoto E et aI. Noise-tesistant and synchronized oscillation of the segmentation clock. Nature 2006; 441:719-723.
    • (2006) Nature , vol.441 , pp. 719-723
    • Horikawa, K.1    Ishimatsu, K.2    Yoshimoto, E.3    aI4
  • 46
    • 33845399322 scopus 로고    scopus 로고
    • Intracellular delay limits cyclic changes in gene expression
    • Rateitschak K, Wolkenhauer O. Intracellular delay limits cyclic changes in gene expression. Math Biosci 2007; 205:163-179.
    • (2007) Math Biosci , vol.205 , pp. 163-179
    • Rateitschak, K.1    Wolkenhauer, O.2
  • 47
    • 17644427530 scopus 로고    scopus 로고
    • Ihekwaba AEC, Broomhead DS, Grimley RL et aI. Sensitivity analysis of parameters controlling oscillatory signalling in the NF-KB pathway: The roles of IKK and IKBa. Syst Bioi 2004; 1:93-1 03.
    • Ihekwaba AEC, Broomhead DS, Grimley RL et aI. Sensitivity analysis of parameters controlling oscillatory signalling in the NF-KB pathway: The roles of IKK and IKBa. Syst Bioi 2004; 1:93-1 03.
  • 48
    • 34547323658 scopus 로고    scopus 로고
    • Graph-theoretic methods for the analysis of chemical and biochemical networks. II. Oscillations in networks with delays
    • Mincheva M, Roussel M. Graph-theoretic methods for the analysis of chemical and biochemical networks. II. Oscillations in networks with delays. J Math Bioi 2007; 55:87-104.
    • (2007) J Math Bioi , vol.55 , pp. 87-104
    • Mincheva, M.1    Roussel, M.2


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