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Volumn 105, Issue 44, 2008, Pages 17061-17066

Prediction of human miRNAs using tissue-selective motifs in 3′ UTRs

Author keywords

Frequent pattern; Functional validation; MicroRNA; Mimic and inhibitor; Target gene

Indexed keywords

MICRORNA;

EID: 55949128866     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0809151105     Document Type: Article
Times cited : (13)

References (30)
  • 2
    • 22844440427 scopus 로고    scopus 로고
    • Identification of hundreds of conserved and nonconserved human microRNAs
    • Bentwich I, et al. (2005) Identification of hundreds of conserved and nonconserved human microRNAs. Nat Genet 37:766-770.
    • (2005) Nat Genet , vol.37 , pp. 766-770
    • Bentwich, I.1
  • 3
    • 33845237644 scopus 로고    scopus 로고
    • RNAi, microRNAs, and human disease
    • Hammond SM (2006) RNAi, microRNAs, and human disease. Cancer Chemother Pharmacol 58(Suppl 1):s63-s68.
    • (2006) Cancer Chemother Pharmacol , vol.58 , Issue.SUPPL. 1
    • Hammond, S.M.1
  • 4
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: Genomics, biogenesis, mechanism, and function
    • Bartel DP (2004) MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116:281-297.
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 5
    • 2442672918 scopus 로고    scopus 로고
    • A combined computational-experimental approach predicts human microRNA targets
    • Kiriakidou M, et al. (2004) A combined computational-experimental approach predicts human microRNA targets. Genes Dev 18:1165-1178.
    • (2004) Genes Dev , vol.18 , pp. 1165-1178
    • Kiriakidou, M.1
  • 6
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • Rehmsmeier M, Steffen P, Hochsmann M, Giegerich R (2004) Fast and effective prediction of microRNA/target duplexes. RNA 10:1507-1517.
    • (2004) RNA , vol.10 , pp. 1507-1517
    • Rehmsmeier, M.1    Steffen, P.2    Hochsmann, M.3    Giegerich, R.4
  • 7
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120:15-20.
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 8
    • 34347406537 scopus 로고    scopus 로고
    • Identification of candidate regulatory sequences in mammalian 3′ UTRs by statistical analysis of oligonucleotide distributions
    • Cora D, Di Cunto F, Caselle M, Provero P (2007) Identification of candidate regulatory sequences in mammalian 3′ UTRs by statistical analysis of oligonucleotide distributions. BMC Bioinformatics 8:174.
    • (2007) BMC Bioinformatics , vol.8 , pp. 174
    • Cora, D.1    Di Cunto, F.2    Caselle, M.3    Provero, P.4
  • 9
    • 15244358503 scopus 로고    scopus 로고
    • Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals
    • Xie X, et al. (2005) Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature 434:338-345.
    • (2005) Nature , vol.434 , pp. 338-345
    • Xie, X.1
  • 10
    • 33745961113 scopus 로고    scopus 로고
    • Detecting and profiling tissue-selective genes
    • Liang S, Li Y, Be X, Howes S, Liu W (2006) Detecting and profiling tissue-selective genes. Physiol Genomics 26:158-162.
    • (2006) Physiol Genomics , vol.26 , pp. 158-162
    • Liang, S.1    Li, Y.2    Be, X.3    Howes, S.4    Liu, W.5
  • 11
    • 23944514849 scopus 로고    scopus 로고
    • Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation
    • Bagga S, et al. (2005) Regulation by let-7 and lin-4 miRNAs results in target mRNA degradation. Cell 122:553-563.
    • (2005) Cell , vol.122 , pp. 553-563
    • Bagga, S.1
  • 12
    • 29144505309 scopus 로고    scopus 로고
    • The widespread impact of mammalian MicroRNAs on mRNA repression and evolution
    • Farh KK, et al. (2005) The widespread impact of mammalian MicroRNAs on mRNA repression and evolution. Science 310:1817-1821.
    • (2005) Science , vol.310 , pp. 1817-1821
    • Farh, K.K.1
  • 13
    • 13944282215 scopus 로고    scopus 로고
    • Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
    • Lim LP, et al. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433:769-773.
    • (2005) Nature , vol.433 , pp. 769-773
    • Lim, L.P.1
  • 14
    • 28944439309 scopus 로고    scopus 로고
    • Animal microRNAs confer robustness to gene expression and have a significant impact on 3UTR evolution
    • Stark A, Brennecke J, Bushati N, Russell RB, Cohen SM (2005) Animal microRNAs confer robustness to gene expression and have a significant impact on 3UTR evolution. Cell 123:1133-1146.
    • (2005) Cell , vol.123 , pp. 1133-1146
    • Stark, A.1    Brennecke, J.2    Bushati, N.3    Russell, R.B.4    Cohen, S.M.5
  • 16
    • 33644874572 scopus 로고    scopus 로고
    • BodyMap-Xs: Anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression
    • Ogasawara O, et al. (2006) BodyMap-Xs: Anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression. Nucleic Acids Res 34(Database issue):D628-D631.
    • (2006) Nucleic Acids Res 34(Database issue)
    • Ogasawara, O.1
  • 18
    • 33646950851 scopus 로고    scopus 로고
    • Biased alternative polyadenylation in human tissues
    • Zhang H, Lee JY, Tian B (2005) Biased alternative polyadenylation in human tissues. Genome Biol 6:R100.
    • (2005) Genome Biol , vol.6
    • Zhang, H.1    Lee, J.Y.2    Tian, B.3
  • 20
    • 33745248430 scopus 로고    scopus 로고
    • microRNA target predictions in animals
    • Rajewsky N (2006) microRNA target predictions in animals. Nat Genet 38(Suppl):S8-S13.
    • (2006) Nat Genet , vol.38 , Issue.SUPPL.
    • Rajewsky, N.1
  • 21
    • 33646272409 scopus 로고    scopus 로고
    • Identification and classification of conserved RNA secondary structures in the human genome
    • Pedersen JS, et al. (2006) Identification and classification of conserved RNA secondary structures in the human genome. PLoS Comput Biol 2:e33.
    • (2006) PLoS Comput Biol , vol.2
    • Pedersen, J.S.1
  • 22
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 23
    • 33750246178 scopus 로고    scopus 로고
    • Mouse microRNA profiles determined with a new and sensitive cloning method
    • Takada S, et al. (2006) Mouse microRNA profiles determined with a new and sensitive cloning method. Nucleic Acids Res 34:e115.
    • (2006) Nucleic Acids Res , vol.34
    • Takada, S.1
  • 24
    • 42749095242 scopus 로고    scopus 로고
    • Human chromosome 21-derived miRNAs are overexpressed in Down syndrome brains and hearts
    • Kuhn DE, et al. (2008) Human chromosome 21-derived miRNAs are overexpressed in Down syndrome brains and hearts. Biochem Biophys Res Commun 370:473-477.
    • (2008) Biochem Biophys Res Commun , vol.370 , pp. 473-477
    • Kuhn, D.E.1
  • 25
    • 0035135420 scopus 로고    scopus 로고
    • Regulatory element detection using correlation with expression
    • Bussemaker HJ, Li H, Siggia ED (2001) Regulatory element detection using correlation with expression. Nat Genet 27:167-171.
    • (2001) Nat Genet , vol.27 , pp. 167-171
    • Bussemaker, H.J.1    Li, H.2    Siggia, E.D.3
  • 26
    • 34548339681 scopus 로고    scopus 로고
    • MicroRNA regulation of human protein protein interaction network
    • Liang H, Li WH (2007) MicroRNA regulation of human protein protein interaction network. RNA 13:1402-1408.
    • (2007) RNA , vol.13 , pp. 1402-1408
    • Liang, H.1    Li, W.H.2
  • 27
    • 10944229314 scopus 로고    scopus 로고
    • Variation in alternative splicing across human tissues
    • Yeo G, Holste D, Kreiman G, Burge CB (2004) Variation in alternative splicing across human tissues. Genome Biol 5:R74.
    • (2004) Genome Biol , vol.5
    • Yeo, G.1    Holste, D.2    Kreiman, G.3    Burge, C.B.4
  • 28
    • 46249092601 scopus 로고    scopus 로고
    • Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites
    • Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB (2008) Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites. Science 320:1643-1647.
    • (2008) Science , vol.320 , pp. 1643-1647
    • Sandberg, R.1    Neilson, J.R.2    Sarma, A.3    Sharp, P.A.4    Burge, C.B.5
  • 29
    • 33747871502 scopus 로고    scopus 로고
    • Method for identifying transcription factor binding sites in yeast
    • Tsai HK, Huang GT, Chou MY, Lu HH, Li WH (2006) Method for identifying transcription factor binding sites in yeast. Bioinformatics 22:1675-1681.
    • (2006) Bioinformatics , vol.22 , pp. 1675-1681
    • Tsai, H.K.1    Huang, G.T.2    Chou, M.Y.3    Lu, H.H.4    Li, W.H.5
  • 30
    • 29144470346 scopus 로고    scopus 로고
    • Real-time quantification of microRNAs by stem-loop RT-PCR
    • Chen C, et al. (2005) Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33:e179.
    • (2005) Nucleic Acids Res , vol.33
    • Chen, C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.