Learning scoring schemes for sequence alignment from partial examples

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volumn 5, Issue 4, 2008, Pages 546-556

  Kim, Eagu ^a   Kececioglu, John ^a  

^a University of Arizona   (United States)

Author keywords

Affine gap penalties; Cutting plane algorithms; Inverse parametric sequence alignment; Linear programming; Substitution score matrices

Indexed keywords

AFFINE GAP PENALTIES; AVERAGE ERRORS; BIOLOGICAL SEQUENCES; CUTTING PLANE ALGORITHMS; GAP PENALTIES; INVERSE PARAMETRIC SEQUENCE ALIGNMENT; MULTIPLE SEQUENCE ALIGNMENTS; OPTIMAL ALIGNMENTS; PARAMETER VALUES; PRIOR WORKS; PROTEIN FAMILIES; SCORING SCHEMES; SEQUENCE ALIGNMENTS; SUBSTITUTION SCORE MATRICES;

GALLIUM ALLOYS; LINEAR PROGRAMMING; LINEARIZATION; SPAMMING;

ALIGNMENT;

PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; ARTIFICIAL INTELLIGENCE; AUTOMATED PATTERN RECOGNITION; CHEMISTRY; METHODOLOGY; MOLECULAR GENETICS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; ULTRASTRUCTURE;

ALGORITHMS; AMINO ACID SEQUENCE; ARTIFICIAL INTELLIGENCE; MOLECULAR SEQUENCE DATA; PATTERN RECOGNITION, AUTOMATED; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

EID: 55949093159     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2008.57     Document Type: Article

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