Mitochondrial DNA and electronic tracking reveal population structure of Atlantic bluefin tuna (Thunnus thynnus)

Marine Biology

Volumn 156, Issue 1, 2008, Pages 13-24

  Boustany, Andre M ^a,b   Reeb, Carol A ^a   Block, Barbara A ^a  

^a STANFORD UNIVERSITY   (United States)

^b DUKE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HOMING BEHAVIOR; MITOCHONDRIAL DNA; PERCIFORM; POPULATION STRUCTURE; SAMPLING; SPAWNING GROUND; TRACKING;

ATLANTIC ISLANDS; ATLANTIC OCEAN; BAHAMAS; CARIBBEAN ISLANDS; GULF OF MEXICO; MEDITERRANEAN SEA; MEDITERRANEAN SEA (WEST);

ANIMALIA; SCOMBRIDAE; THUNNUS THYNNUS;

EID: 55949091195     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-008-1058-0     Document Type: Article

References (66)

1. JR Alvarado-Bremer I Nasseri B Ely 1998 A provisional study of northern bluefin tuna populations Coll Vol Sci Pap ICCAT SCRS 98 78 127 129
2. JR Alvarado-Bremer J Vinas J Mejuto B Ely C Pla 2005 Comparative phylogeography of Atlantic bluefin tuna and swordfish: the combined effects of vicariance, secondary contact, introgression, and population expansion on the regional phylogenies of two highly migratory pelagic fishes Mol Phylogenet Evol 36 169 187 10.1016/j.ympev.2004.12.011
3. RE Baglin Jr 1982 Reproductive biology of western Atlantic bluefin tuna (Thunnus thynnus) Fish Bull (Wash D C) 80 121 134
4. Y Benjamini Y Hochberg 1995 Controlling the false discovery rate: a practical and powerful approach to multiple testing J R Stat Soc B 57 289 300
5. P Bentzen CT Taggart DE Ruzzante D Cook 1996 Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the northwest Atlantic Can J Fish Aquat Sci 53 2706 2721 10.1139/cjfas-53-12-2706
6. E Bermingham SH Forbes K Friedland C Pla 1991 Discrimination between Atlantic salmon (Salmo salar) of North-American and European origin using restriction analyses of mitochondrial-DNA Can J Fish Aquat Sci 48 884 893 10.1139/f91-105
7. BA Block H Dewar SB Blackwell TD Williams ED Prince CJ Farwell 2001 Electronic tags reveal migratory movements, depth preferences and thermal biology of Atlantic bluefin tuna Science 293 1310 1314 10.1126/science.1061197
8. BA Block SLH Teo A Walli A Boustany MJW Stokesbury CJ Farwell 2005 Electronic tagging and population structure of Atlantic bluefin tuna Nature 434 1121 1127 10.1038/nature03463
9. J Brodziak B Bentley D Bartley GAE Gall R Gomulkiewicz M Mangel 1992 Tests of genetic stock identification using coded wire tagged fish Can J Fish Aquat Sci 49 1507 1517
10. RE Broughton JR Gold 1997 Microsatellite development and survey of variation in northern bluefin tuna (Thunnus thynnus) Mol Mar Biol Biotechnol 6 308 314
11. FG Carey JM Teal 1969 Regulation of body temperature by the bluefin tuna Comp Biochem Physiol 28A 205 213 10.1016/0010-406X(69)91336-X
12. J Carlsson JR [tmp] McDowell P Diaz-Jaimes JEL Carlsson SB Boles JR Gold 2004 Microsatellite and mitochondrial DNA analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the Mediterranean Sea Mol Ecol 13 3345 3356 10.1111/j.1365-294X.2004.02336.x
13. J Carlsson JR [tmp] McDowell JEL Carlsson JE Graves 2007 Genetic identity of YOY bluefin tuna from the eastern and Western Atlantic spawning areas J Hered 98 23 28 10.1093/jhered/esl046
14. Collette BB, Reeb CA, Block BA (2001) Systematics of the tunas and mackerels (Scombridae). In: Block BA, Stevens ED (eds) Physiological ecology of tunas. Academic Press, San Diego, pp 5-33
15. S Chow H Kishino 1995 Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): inconsistent implications from morphology, nuclear and mitochondrial genomes Natl Res Inst Far Seas Fish 41 741 748
16. S Chow H Okamoto N Miyabe K Hiramatsu N Barut 2000 Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa Mol Ecol 9 221 227 10.1046/j.1365-294x.2000.00851. x
17. Cort JJ, Loirzou B (1990) Reproduction-Eastern Atlantic and Mediterranean. In: Clay D (ed) World bluefin meeting, May 25-31, 1990. La Jolla, CA, pp 99-101
18. JL Cort 1991 Age and growth of the bluefin tuna Thunnus thynnus (L.) of the Northeast Atlantic Col Vol Sci Pap ICCAT 35 213 230
19. S De Innocentiis A Lesti S Livi AR Rossi D Crosetti L Sola 2004 Microsatellite markers reveal population structure in gilthead sea bream Sparus auratus from the Atlantic Ocean and Mediterranean Sea Fish Sci 70 852 859 10.1111/j.1444-2906.2004.00879.x
20. G De Metrio GP Arnold BA Block JM de la Serna M Deflorio M Cataldo C Yannopoulos P Megalofonou S Beemer C Farwell A Seitz 2002 Behaviour of post-spawning Atlantic bluefin tuna tagged with pop-up satellite tags in the Mediterranean and eastern Atlantic Col Vol Sci Pap ICCAT 54 415 424
21. GA Diaz SC Turner 2007 Size frequency distribution analysis, age composition, and maturity of western bluefin tuna in the Gulf of Mexico from the U.S. (1981-2005) and Japanese (1975-1981) longline fleets Col Vol Sci Pap ICCAT 6 1160 1170
22. PH Edmonds JI Sammons 1973 Similarity of genetic polymorphism of tetrazolium oxiidase in bluefin tuna (Thunnus thynnus) from the Atlantic coast of France and the western North Atlantic J Fish Res Board Can 30 1031 1032
23. B Ely DS Stoner JM Dean JR Alvarado-Bremer S Chow S Tsuji 2002 Genetic analysis of Atlantic northern bluefin tuna captured in the northwest Atlantic Ocean and the Mediterranean Sea Col Vol Sci Pap ICCAT 54 372 376
24. L Excoffier PE Smouse JM Quattro 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes:application of human mitochondrial DNA restriction data Genetics 131 479 491
25. J Goldstein S Heppel A Cooper S Brault M Lutcavage 2007 Reproductive status and body condition of Atlantic bluefin tuna in the Gulf of Maine, 2000-2002 Mar Biol (Berl) 151 2063 2075 10.1007/s00227-007-0638-8
26. C Gomes HA Oxenford RBG Dales 1999 Mitochondrial DNA D-loop variation and implications for stock structure of the four-wing flyingfish, Hirundichthys affinis, in the central western Atlantic Bull Mar Sci 64 485 500
27. Graves JE (1996) Conservation genetics of fishes in the pelagic marine realm. In: Avise JC, Hamrick JL (eds) Conservation genetics: case histories from nature. Springer, Berlin, pp 335-366
28. RR Hudson 2000 A new statistic of detecting genetic differentiation Genetics 155 2001 2014
29. ICCAT 2003 Report of the 2002 Atlantic bluefin tuna stock assessment session Col Vol Sci Pap ICCAT 55 710 937
30. WJ Jones JM Quattro 1999 Genetic structure of summer flounder (Paralichthys dentatus) populations north and south of Cape Hatteras Mar Biol (Berl) 133 129 135 10.1007/s002270050451
31. DK Kimura AM Shimada FR Shaw 1998 Stock structure and movement of tagged sablefish, Anoplopoma fimbria, in offshore northeast Pacific waters and the effects of El Nino Southern Oscillation on migration and growth Fish Bull (Wash D C) 96 462 481
32. S Kumar K Tamura M Nei 1994 MEGA: molecular evolutionary genetics analysis software for microcomputers Comput Appl Biosci 10 189 191
33. RM Laurs JA Wetherall 1981 Growth-rates of North Pacific albacore, Thunnus alalunga, based on tag returns Fish Bull (Wash D C) 79 293 302
34. ME Lutcavage RW Brill GB Skomal BC Chase PW Howey 1999 Results of pop-up satellite tagging on spawning size class fish in the Gulf of Maine: do North Atlantic bluefin spawn in the mid-Atlantic? Can J Fish Aquat Sci 56 173 177 10.1139/cjfas-56-2-173
35. A Magoulas R Castilho S Caetano S Marcato T Patarnello 2006 Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus) Mol Phylogenet Evol 39 734 746 10.1016/j.ympev.2006.01.016
36. Mather FJ, Mason JM, Jones AC (1995) Life history and fisheries of Atlantic bluefin tuna. NOAA technical memorandum, NMFS-SFSC 370, 165 pp
37. MF [tmp] McGowan WJ Richards 1989 Bluefin tuna, Thunnus thynnus, larvae in the Gulf Stream off the southeastern USA: satellite and shipboard observations of their environment Fish Bull (Wash D C) 87 615 632
38. M Nakadate J Vinas A Corriero S Clarke N Suzuki S Chow 2005 Genetic isolation between Atlantic and Mediterranean albacore populations inferred from mitochondrial and nuclear DNA markers J Fish Biol 66 1545 1557 10.1111/j.0022-1112.2005.00705.x
39. National Research Council (1994) An assessment of Atlantic bluefin tuna. Natl Acad Press, Washington, 148 pp
40. A Natoli A Birkun A Aguilar A Lopez AR Hoelzel 2005 Habitat structure and the dispersal of male and female bottlenose dolphins (Tursiops truncatus) Proc R Soc B 272 1217 1226
41. D Nemerson S Berkeley C Safina 2000 Spawning site fidelity in Atlantic bluefin tuna, Thunnus thynnus: the use of size-frequency analysis to test for the presence of migrant east Atlantic bluefin tuna on Gulf of Mexico spawning grounds Fish Bull (Wash D C) 98 118 126
42. T Nishida S Tsuji K Segawa 1998 Spatial data analyses of Atlantic bluefin tuna larval surveys in the 1994 ICCAT BYP Coll Vol Sci Pap ICCAT 48 107 110
43. D Posada KA Crandall 1998 MODELTEST: testing the model of DNA substitution Bioinform Oxf 14 817 818 10.1093/bioinformatics/14.9.817
44. JM Pujolar C Pla 2000 Genetic differentiation between north-west Atlantic and Mediterranean samples of bluefin tuna (Thunnus thynnus) using isozyme analysis Coll Vol Sci Pap ICCAT 51 882 891
45. JF Quinn A Hastings 1987 Extinction in subdivided habitats Conserv Biol 1 198 208 10.1111/j.1523-1739.1987.tb00033.x
46. CA Reeb L Arcangeli BA Block 2000 Structure and migration corridors in Pacific populations of the Swordfish Xiphius gladius, as inferred through analyses of mitochondrial DNA Mar Biol (Berl) 136 1123 1131 10.1007/ s002270000291
47. WJ Richards 1976 Spawning of bluefin tuna in the Atlantic Ocean and adjacent seas Coll Vol Sci Pap ICCAT 5 267 278
48. WJ Richards 1990 Results of a review of the US bluefin tuna larval assessment with a brief response Coll Vol Sci Pap ICCAT 32 240 247
49. Rodriguez-Roda (1971) Investigations of tuna (Thunnus thynnus) in Spain. ICCAT Rep Biennal Period 1970-1971(Part 2), pp 110-113
50. J Rozas JC Sánchez-DelBarrio R Messeguer-Rozas 2003 DnaSP, DNA polymorphism analyses by the coalescent and other methods Bioinformatics 19 2496 2497 10.1093/bioinformatics/btg359
51. Schaefer KM (2001) Reproductive biology of tunas. In: Block BA, Stevens ED (eds) Physiological ecology of tunas. Academic Press, San Diego, pp 225-270
52. Schneider S, Kueffer JM, Roessli D, Excoffier L (1997) ARLEQUIN version 1:1: a Software for Population Genetic Data Analysis Genetics and Biometry Laboratory. University of Geneva, Geneva
53. Sharp GD (1978) Behavioral and physiological properties of tunas and their effects on vulnerability to fishing gear. In: Sharp GD, Dizon AE (eds) The physiological ecology of tunas. Academic Press, New York, pp 397-449
54. DS Simberloff LG Abele 1976 Island bio-geography theory and conservation practice Science 191 285 286 10.1126/science.191.4224.285
55. MJW Stokesbury SLH Teo A Seitz RK O'Dor BA Block 2004 Movement of Atlantic bluefin tuna (Thunnus thynnus) as determined by satellite tagging experiments initiated off New England Can J Fish Aquat Sci 61 1976 1987 10.1139/f04-130
56. F Tajima 1989 The effect of change in population size on DNA polymorphism Genetics 123 597 602
57. M Takagi T Okamura S Chow N Taniguchi 1999 PCR primers for microsatellite loci in tuna species of the genus Thunnus and its application for population genetic study Fish Sci 65 571 576
58. K Tamura M Nei 1993 Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees Mol Biol Evol 10 512 526
59. SLH Teo AM Boustany S Blackwell A Walli KC Weng BA Block 2004 Validation of geolocation estimates based on light level and sea surface temperature from electronic tags Mar Ecol Prog Ser 283 81 98 10.3354/meps283081
60. SLH Teo AM Boustany H Dewar MJW Stokesbury KCM Weng S Beemer 2006 Annual migrations, diving behavior, and thermal biology of Atlantic bluefin tuna, Thunnus thynnus, on their Gulf of Mexico breeding grounds Mar Biol (Berl) 151 1 18 10.1007/s00227-006-0447-5
61. HC Thompson RF Contin 1980 Electrophoretic study of Atlantic bluefin tuna (Thunnus thynnus) from the eastern and western Atlantic Ocean Bull Mar Sci 30 727 731
62. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680 10.1093/nar/22.22.4673
63. TN Todd RC Haas 1993 Genetic and tagging evidence for movement of walleyes between Lake Erie and Lake St-Clair J Great Lakes Res 19 445 452
64. J Vinas J Alvarado-Bremer C Pla 2004 Phylogeography of the Atlantic bonito (Sarda sarda) in the northern Mediterranean: the combined effects of historical vicariance, population expansion, secondary invasion, and isolation by distance Mol Phylogenet Evol 33 32 42 10.1016/j.ympev.2004.04.009
65. RS Waples 1998 Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species J Hered 89 438 450 10.1093/jhered/89.5.438
66. RD Ward NG Elliott BH Innes AJ Smolenski PM Grewe 1997 Global population structure of yellowfin tuna, Thunnus albacares, inferred from allozyme and mitochondrial DNA variation Fish Bull (Wash D C) 95 566 575