Microsatellite markers reveal population structure in gilthead sea bream Sparus auratus from the Atlantic Ocean and Mediterranean Sea

Fisheries Science

Volumn 70, Issue 5, 2004, Pages 852-859

  De Innocentiis, Sabina ^a   Lesti, Andrea ^b   Livi, Silvia ^a   Rossi, Anna Rita ^b   Crosetti, Donatella ^a   Sola, Luciana ^b  

^a Ctrl Institute for Marine Research   (Italy)

^b SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

Gilthead sea bream; Microsatellite; Population structure; Sparus auratus

Indexed keywords

ARCHOSARGUS RHOMBOIDALIS; HYPEROGLYPHE POROSA; SPARUS; SPARUS AURATA; TRANSPOSONS;

EID: 7544225161     PISSN: 09199268     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1444-2906.2004.00879.x     Document Type: Article

References (45)

1. Perez-Enriquez R, Takemura M, Tabata K, Taniguchi N. Genetic diversity of red sea bream Pagrus mayor in western Japan in relation to stock enhancement. Fish. Sci. 2001; 67: 71-78.
2. Youngson AF, Dosdat A, Saroglia M, Jordan WC. Genetic interactions between marine finfish species in European aquaculture and wild conspecifics. J. Appl. Ichthyol. 2001; 17: 153-162.
3. Yokota M, Harada Y, Iizuka M. Genetic drift in a hatchery and the maintenance of genetic diversity in hatchery-wild systems. Fish. Sci. 2003; 69: 101-109.
4. FAO. Code of Conduct for Responsible Fisheries. FAO, Rome. 1995.
5. Cervelli M, Comparini A, Fava G, Rodinò E. Prime ricerche di genetica biochimica applicate all'acquacoltura di orata (Sparus auratus L.). Oebalia 1985; XI: 49-58.
6. Funkenstein B, Cavari B, Stadie T, Davidovitch E. Restriction site polymorphism of mitochondrial DNA of the gilthead sea bream (Sparus auratus) broodstock in Eilat, Israel. Aquaculture 1990; 89: 217-223.
7. Maniatis T, Fritsch EF, Sambrook J. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratories, Cold Spring Harbor, NY. 1982.
8. Batargias C, Dermitzakis E, Magoulas A, Zouros E. Characterization of six polymorphic microsatellite markers in gilthead sea bream, Sparus aurata (Linnaeus 1758). Mol. Ecol. 1999; 8: 897-899.
9. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F. 1996-2004 GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. [Internet]. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier (France): [cited 01/06/2004]. Available from: http://www.univ-montp2.fr/~genetix/genetix/genetix.htm
10. Raymond M, Rousset F. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 1995; 86: 248-249.
11. Guo SW, Thompson EA. Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometrics 1992; 48: 361-372.
12. Cockerham CC, Weir BS. Digenic descent measures for finite populations. Genet. Res. 1979; 30: 121-147.
13. Goudet J, Raymond M, de Meeüs T, Rousset F. Testing differentiation in diploid populations. Genetics 1996; 144: 1933-1940.
14. Rice WR. Analyzing tables of statistical tests. Evolution 1989; 43: 223-225.
15. Wright S. The genetical structure of populations. Ann. Eugenics 1951; 15: 323-354.
16. Weir BS, Cockerham CC. Estimating F-statistics for the analysis of population structure. Evolution 1984; 38: 1358-1370.
17. Excoffier L, Smouse PE, Quattro JM. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992; 131: 479-491.
18. Schneider S, Kueffer JM, Roessli D, Excoffier L. Arlequin, Version 1.1. A Software for Population Genetic Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva. 1997.
19. Nei M. Genetic distance between populations. Am. Nat. 1972; 106: 283-292.
20. Cavalli-Sforza LL, Edwards AWF. Phylogenetic analysis: models and estimation procedures. Evolution 1967; 21: 550-570.
21. Paetkau D, Waits LP, Clarkson PL, Craighead L, Strobeck C. An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations. Genetics 1997; 147: 1943-1957.
22. Cornuet JM, Piry S, Luikart G, Estoup A, Solignac M. New methods employing multilocus genotypes to select or exclude populations as origins of individuals. Genetics 1999; 153: 1989-2000.
23. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 1967; 27: 209-220.
24. Bentzen P, Taggart CT, Ruzzante DE, Cook D. Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua). Can. J. Fish. Aquat. Sci. 1996; 53: 2706-2721.
25. Garcia de Lèon FJ, Chikhi L, Bonhomme F. Microsatellite polymorphism and population subdivision in natural population of European sea bass Dicentrarchus labrax (Linnaeus, 1758). Mol. Ecol. 1997; 6: 51-62.
26. Perez-Enriquez R., Taniguchi N. Genetic structure of red sea bream (Pagrus major) population of Japan and the Southwest Pacific, using microsatellite DNA markers. Fish. Sci. 1999; 65: 23-30.
27. Jeong DS, Umino T, Kuroda K, Hayashi M, Nakagawa H, Kang JC, Morishima K, Arai K. Genetic divergence and population structure of black sea bream Acanthopagrus schlegeli inferred from microsatellite analysis. Fish. Sci. 2003; 69: 896-902.
28. De Woody JA, Avise JC. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. J. Fish Biol. 2000; 56: 461-473.
29. Chapman RW, Sedberry GR, Koenig CC, Eleby BM. Stock identification of gag, Mycteroperca microlepis, along the Southeast coast of the United States. Mar. Biotechn. 1999; 1: 137-146.
30. Lundy CJ, Moran P, Rico C, Milner RS, Hewitt GM. Macrogeographic population differentiation in oceanic environments: a case study of European hake (Merluccius merluccius), a commercially important fish. Mol. Ecol. 1999; 8: 1889-1898.
31. Rogl F, Steininger F, Muller C. Middle Miocene salinity crisis and paleogeography of the Paratethys (middle and eastern Europe). In: Hsü K. (eds). Initial Reports of the Deep Sea Drilling Project, vol. 42. National Science Foundation, Washington. 1978; 985-990.
32. Gaudant J. La crise messinienne et ses effets sur l'ichthyofaune néogène de la Méditerranée: le témoignage des squelettes en connexion de poissons téléostéens. Geodiversitas 2002; 24: 691-710.
33. Weber JL, Wong C. Mutation of human short tandem repeats. Hum. Mol. Genet. 1993; 2: 1123-1128.
34. Artale V, Astraldi M, Buffoni G, Gasparini GP. Seasonal variability of gyre-scale circulation in the northern Tyrrhenian Sea. J. Geophys. Res. C. Oceans 1994; 99: 14 127-14 137.
35. Perilli A, Rupolo V, Salusti E. Satellite investigations of a cyclonic gyre in the central Tyrrhenian Sea (western Mediterranean Sea). J. Geophys. Res. 1995; 100: 2487-2500.
36. Buffoni G, Falco P, Griffa A, Zambianchi E. Dispersion processes and residence times in a semi-enclosed basin with recirculating gyres: An application to the Tyrrhenian Sea. J. Geophys. Res. 1997; 102: 18 699-18 713.
37. Molcard A, Pinardi N, Iskandarani M, Haidvogel DB. Wind driven general circulation of the Mediterranean Sea simulated with a Spectral Element Ocean Model. Dyn. Atmos. Oceans 2002; 35: 97-130.
38. Quesada H, Beynon CM, Skibinski DOF. A mitochondrial DNA discontinuity in the mussel Mytilus galloprovincialis: Pleistocene vicariance biogeography and secondary intergradation. Mol. Biol. Evol. 1995; 12: 521-524.
39. Istituto Idrografico della Marina. Cartine delle Correnti Superficiali Medie Mensili Dei Mari Italiani. Pub. no. 3068. Nautica Editrice, Roma. 2002.
40. Centre National pour l'Exploitation des Océans. Fiches biotechniques d'aquaculture: la dorade (Sparus auratus). CNEXO, Paris. 1983.
41. Tanaka M. The ecological studies on the larvae and juveniles of the red sea bream in Shijiki Bay. 1. The horizontal distribution of the pelagic larvae and juveniles in and outside the bay. Bull. Seikai Reg. Fish. Res. Lab. 1980; 54: 231-258.
42. Garza JC, Slatkin M, Freimer NB. Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Mol. Biol. Evol. 1995; 12: 594-603.
43. Nauta MJ, Weissing FJ. Constraints on allele size at microsatellite loci: implications for genetic differentiation. Genetics 1996; 143: 1021-1032.
44. Ellegren H. Heterogeneous mutation processes in human microsatellite DNA sequences. Nat. Genet. 2000; 24: 400-402.
45. Crosetti D. Genetic Characterisation of Reared Populations of Fish Species Used in Aquaculture, With Particular Attention to Captive Breeding Broodstocks. Final Report of the MiPAF research project 5C148. MiPAF, Rome. 2004.