Actinopolymorpha rutila sp. nov., isolated from a forest soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 10, 2008, Pages 2443-2446

  Wang, Yong Xia ^a,b   Zhang, Yu Qin ^a,b,c   Xu, Li Hua ^a,b   Li, Wen Jun ^a,b,d  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^b YUNNAN UNIVERSITY   (China)

^c INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

^d SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

MENAQUINONE; RNA 16S;

ACTINOBACTERIA; ACTINOPOLYMORPHA RUTILA; AEROBIC BACTERIUM; ARTICLE; BACTERIAL CELL WALL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; CULTURE MEDIUM; DNA DNA HYBRIDIZATION; FOREST SOIL; GRAM POSITIVE BACTERIUM; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

CELL WALL; CHINA; DNA, BACTERIAL; GENES, BACTERIAL; GENES, RRNA; GENOTYPE; LIPIDS; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; PROPIONIBACTERIACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; TREES; VITAMIN K 2;

ACTINOPOLYMORPHA; ACTINOPOLYMORPHA SINGAPORENSIS; NOCARDIOIDACEAE; POSIBACTERIA;

EID: 55849096217     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65629-0     Document Type: Article

References (29)

1. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H. N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
5. He, L., Li, W., Huang, Y., Wang, L. M., Liu, Z. H., Lanoot, B. J., Vancanneyt, M. & Swings, J. (2005). Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol 55, 1939-1944.
6. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
7. Kelly, K. L. (1964). Inter-Society Color Council - National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
8. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequence. J Mol Evol 16, 111-120.
9. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
10. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
11. Lechevalier, M. P., Stern, A. E. & Lechevalier, H. A. (1981). Phospholipids in the taxonomy of actinomycetes. Zentralbl Bakteriol Hyg Abt 1 (Suppl 11), 111-116.
12. Li, W. J., Xu, P., Schumann, P., Zhang, Y. Q., Pukall, R., Xu, L. H., Stackebrandt, E. & Jiang, C. L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China) and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
13. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
14. Miller, E. S., Woese, C. R. & Brenner, S. (1991). Description of the erythromycin-producing bacterium Arthrobacter sp. strain NRRL B-3381 as Aeromicrobium erythreum gen. nov., sp. nov. Int J Syst Bacteriol 41, 363-368.
15. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
16. Nesterenko, O. A., Kvasnikov, E. I. & Nogina, T. M. (1985). Nocardioidaceae fam. nov., a new family of the order Actinomycetales Buchanan 1917. Mikrobiol Zh 47, 3-12.
17. Park, Y. H., Yoon, J. H., Shin, Y. K., Suzuki, K., Kudo, T., Seino, A., Kim, H. J., Lee, J. S. & Lee, S. T. (1999). Classification of 'Nocardioides fulvus' IFO 14399 and Nocardioides sp. ATCC 39419 in Kribbella gen. nov., as Kribbella flavida sp. nov. and Kribbella sandramycini sp. nov. Int J Syst Bacteriol 49, 743-752.
18. Prauser, H. (1976). Nocardioides, a new genus of the order Actinomycetales. Int J Syst Bacteriol 26, 58-65.
19. Pridham, T. G. & Lyons, A. J. (1980). Methodologies for Actinomycetales with special reference to streptomycetes and strepto-verticillia. In Actinomycete Taxonomy, Special publication no. 6, pp. 153-224. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society for Industrial Microbiology.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
22. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
23. Song, L., Li, W. J., Wang, Q. L., Chen, G. Z., Zhang, Y. S. & Xu, L. H. (2005). Jiangella gansuensis gen. nov., sp. nov., a novel actinomycete from a desert soil in north-west China. Int J Syst Evol Microbiol 55, 881-884.
24. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin layer chromatography. Appl Microbiol 28, 226-231.
25. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
26. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
27. Urzì, C., Salamone, P., Schumann, P. & Stackebrandt, E. (2000). Marmoricola aurantiacus gen. nov., sp. nov., a coccoid member of the family Nocardioidaceae isolated from a marble statue. Int J Syst Evol Microbiol 50, 529-536.
28. Wang, Y. M., Zhang, Z. S., Xu, X. L., Ruan, J. S. & Wang, Y. (2001). Actinopolymorpha singaporensis gen. nov., sp. nov., a novel actinomycete from the tropical rainforest of Singapore. Int J Syst Bacteriol 51, 467-473.
29. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.