Classification of 'Nocardioides fulvus' IFO 14399 and Nocardioides sp. ATCC 39419 in Kribbella gen. nov., as Kribbella flavida sp. nov. and Kribbella sandramycini sp. nov.

International Journal of Systematic Bacteriology

Volumn 49, Issue 2, 1999, Pages 743-752

  Park, Yong Ha ^a   Yoon, Jung Hoon ^a,b   Shin, Yong Kook ^a   Suzuki, Ken Ichiro ^c   Kudo, Takuji ^c   Seino, Akio ^a   Kim, Hong Joong ^a   Lee, Jung Sook ^a   Lee, Sung Taik ^b  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^c RIKEN BIORESOURCE CENTER   (Japan)

Author keywords

Kribbella flavida; Kribbella sandramycini; LL diaminopimelic acid; Nocardioides spp.; Phylogeny

Indexed keywords

ALANINE; DIAMINOPIMELIC ACID; MENAQUINONE; PHOSPHATIDYLCHOLINE;

AEROBIC BACTERIUM; ARTICLE; BACTERIUM ISOLATION; CELL STRUCTURE; CHEMOTAXONOMY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; DNA SEQUENCE; KRIBBELLA FLAVIDA; KRIBBELLA SANDRAMYCINI; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS); KRIBBELLA; KRIBBELLA FLAVIDA; KRIBBELLA SANDRAMYCINI; NEGIBACTERIA; NOCARDIOIDACEAE; NOCARDIOIDES; NOCARDIOIDES FULVUS; NOCARDIOIDES SP.; POSIBACTERIA; PROKARYOTA;

EID: 0032900531     PISSN: 00207713     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-49-2-743     Document Type: Article

References (37)

1. Charfreitag, O., Collins, M. D. & Stackebrandt, E. (1988). Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. Int J Syst Bacteriol 38, 354-357.
2. Collins, M. D., Dorsch, M. & Stackebrandt, E. (1989). Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov. Int J Syst Bacteriol 39, 1-6.
3. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
4. Kalakoutskii, L. V., Kirillova, I. P. & Krassilnikov, N. A. (1967). A new genus of the Actinomycetales - Intrasporangium gen.nov. J Gen Microbiol 48, 79-85.
5. Komagata, K. & Suzuki, K. (1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-203.
6. Kurup, V. P. & Fink, J. N. (1975). A scheme for the identification of thermophilic actinomycetes associated with hypersensitivity pneumonitis. J Clin Microbiol 2, 55-61.
7. Lechevalier, M. P. & Lechevalier, H. A. (1970). A critical evaluation of the genera of aerobic actinomycetes. In The Actinomycetales, pp. 393-405. Edited by H. Prauser. Jena: Gustav Fischer.
8. Lechevalier, M. P., Lechevalier, H. & Holbert, P. E. (1968). Sporichthya, un nouveau genre de Streptomycetaceae. Ann Inst Pasteur 114, 277-286.
9. Lindenbein, W. (1952). Über einige chemisch interessante Actinomycetenstämme und ihre Klassifizierung. Arch Mikrobiol 17, 361-383.
10. Matson, J. A. & Bush, J. A. (1989). Sandramycin, a novel antitumour antibiotic produced by a Nocardioides sp. Production, isolation, characterization and biological properties. J Antibiotics 42, 1763-1767.
11. Miller, E. S., Woese, C. R. & Brenner, S. (1991). Description of the erythromycin-producing bacterium Arthrobacter sp. strain NRRL B-3381 as Aeromicrobium erythreum gen. nov., sp. nov. Int J Syst Bacteriol 41, 363-368.
12. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
13. Nakamura, K., Hiraishi, A., Yoshimi, Y., Kawaharasaki, M., Masuda, K. & Kamagata, Y. (1995). Microlunatus phosphovorus gen. nov., sp. nov., a new gram positive polyphosphate-accumulating bacterium isolated from activated sludge. Int J Syst Bacteriol 45, 17-22.
14. Nesterenko, O. A., Kvasnikov, E. I. & Nogina, T. M. (1985). Nocardioidaceae fam. nov., a new family of the order Actinomycetales Buchanan 1917. Microbiol Zhurnal 47, 3-12.
15. O'Donnell, A. G., Goodfellow, M. & Minnikin, D. E. (1982). Lipids in the classification of Nocardioides: reclassification of Arthrobacter simplex (Jensen) Lochhead in the genus Nocardioides (Prauser) emend. O'Donnell et al. as Nocardioides simplex comb. nov. Arch Microbiol 133, 323-329.
16. Pitcher, D. G. & Collins, M. D. (1991). Phylogenetic analysis of some LL-diaminopimelic acid-containing coryneform bacteria from human skin: description of Propionibacterium innocuum sp. nov. FEMS Microbiol Lett 84, 295-300.
17. Prauser, H. (1976). Nocardioides, a new genus of the order Actinomycetales. Int J Syst Bacteriol 26, 58-65.
18. Prauser, H., Schumann, P., Rainey, F. A., Kroppenstedt, R. M. & Stackebrandt, E. (1997). Terracoccus luteus gen. nov., sp. nov., an LL-diaminopimelic acid-containing coccoid actinomycete from soil. Int J Syst Bacteriol 47, 1218-1224.
19. Rainey, F. A., Schumann, P., Prauser, H., Toalster, R. & Stackebrandt, E. (1993). Sporichthya polymorpha represents a novel line of descent within the order Actinomycetales. FEMS Microbiol Lett 109, 263-268.
20. Ruan, J. S. & Zhang, Y. M. (1979). Two new species of Nocardioides. Acta Microbiol Sin 19, 347-352.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sasaki, J., Chijimatsu, M. & Suzuki, K. (1998). Taxonomic significance of 2,4-diaminobutyric acid isomers in the cell wall peptidoglycan of actinomycetes and reclassification of Clavibacter toxicus as Rathayibacter toxicus comb. nov. Int J Syst Bacteriol 48, 403-410.
23. Schumann, P., Prauser, H., Rainey, F. A., Stackebrandt, E. & Hirsch, P. (1997). Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from antarctic sandstone. Int J Syst Bacteriol 47, 278-283.
24. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
25. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
26. Suzuki, K. & Komagata, K. (1983). Pimelobacter gen. nov., a new genus of coryneform bacteria with LL-diaminopimelic acid in the cell wall. J Gen Appl Microbiol 29, 59-71.
27. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
28. Tamura, T. & Yokota, A. (1994). Transfer of Nocardioides fastidiosa Collins and Stackebrandt 1989 to the genus Aeromicrobium as Aeromicrobium fastidiosum comb. nov. Int J Syst Bacteriol 44, 608-611.
29. Tamura, T., Takeuchi, M. & Yokota, A. (1994). Luteococcus japonicus gen. nov., a new gram-positive coccus with LL-diaminopimelic acid in the cell wall. Int J Syst Bacteriol 44, 348-356.
30. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
31. Waksman, S. A. & Henrici, A. T. (1943). The nomenclature and classification of the actinomycetes. J Bacteriol 46, 337-341.
32. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
33. Williams, S.T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
34. Yokota, A., Tamura, T., Takeuchi, M., Weiss, N. & Stackebrandt, E. (1994). Transfer of Propionibacterium innocuum Pitcher and Collins 1991 to Propioniferax gen. nov., as Propioniferax innocua comb. nov. Int J Syst Bacteriol 44, 579-582.
35. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H. (1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502-505.
36. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998a). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48, 187-194.
37. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998b). Genetic analyses of the genus Nocardioides and related taxa based on 16S-23S rDNA internally transcribed spacer sequences. Int J Syst Bacteriol 48, 641-650.