-
1
-
-
0036845322
-
Models-of-data and models-of processes in the post-genomic era
-
Voit, E. O. "Models-of-data and models-of processes in the post-genomic era.," Math. Biosci., 2002, 180, 263-274.
-
(2002)
Math. Biosci
, vol.180
, pp. 263-274
-
-
Voit, E.O.1
-
2
-
-
0032406131
-
Non-linear optimization of biochemical pathways: Applications to metabolic engineering and parameter estimation
-
Mendes, P. and Kelt, D, B. "Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation," Bioinformatics, 1998, 14, 869-883.
-
(1998)
Bioinformatics
, vol.14
, pp. 869-883
-
-
Mendes, P.1
Kelt, D.B.2
-
3
-
-
0035221090
-
Development of a system for the inference of large scale genetic networks
-
Maki, Y., Tominaga, D., Okamoto, M., Watanabe, S., Eguchi, Y. "Development of a system for the inference of large scale genetic networks," Pacific Symposium on Biocomputing, 2001, 6, 446-458.
-
(2001)
Pacific Symposium on Biocomputing
, vol.6
, pp. 446-458
-
-
Maki, Y.1
Tominaga, D.2
Okamoto, M.3
Watanabe, S.4
Eguchi, Y.5
-
4
-
-
16344385431
-
Evolutionary optimization with data collocation for reverse engineering of biological networks
-
Tsai, K. Y. and Wang, F. S. "Evolutionary optimization with data collocation for reverse engineering of biological networks," Bioinformatics, 2005, 21, 1180-1188.
-
(2005)
Bioinformatics
, vol.21
, pp. 1180-1188
-
-
Tsai, K.Y.1
Wang, F.S.2
-
5
-
-
25444464334
-
Quantitative inference of dynamic regulatory pathways via microarray data
-
Chang, W. C., Li, C. W., and Chen, B. S. "Quantitative inference of dynamic regulatory pathways via microarray data," BMC Bioinformatics, 2005, 6, 1-19.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 1-19
-
-
Chang, W.C.1
Li, C.W.2
Chen, B.S.3
-
6
-
-
33749340654
-
Parameter estimation in biochemical systems models with alternating regression
-
Chou, I. C., H. M., and Voit, E. O. "Parameter estimation in biochemical systems models with alternating regression," Theoretical Biology and Medical Modelling, 2006, 3, 1-25.
-
(2006)
Theoretical Biology and Medical Modelling
, vol.3
, pp. 1-25
-
-
Chou, I.C.H.M.1
Voit, E.O.2
-
7
-
-
33646364037
-
Identification of metabolic system parameters using global optimization methods
-
Polisetty, P. K., Voit, E. O. and Gatzke, E. P. "Identification of metabolic system parameters using global optimization methods," Theoretical Biology and Medical Modelling, 2006, 3, 1-15.
-
(2006)
Theoretical Biology and Medical Modelling
, vol.3
, pp. 1-15
-
-
Polisetty, P.K.1
Voit, E.O.2
Gatzke, E.P.3
-
8
-
-
0031153078
-
Steady-state modelling of chemical process systems using genetic programming
-
McKay, B., Willis, M. and Barton, G. "Steady-state modelling of chemical process systems using genetic programming," Comput. Chem. Eng., 1997, 21, 981-996.
-
(1997)
Comput. Chem. Eng
, vol.21
, pp. 981-996
-
-
McKay, B.1
Willis, M.2
Barton, G.3
-
9
-
-
0031653928
-
-
Edwards, K., Edgar, T. F. and Maousiouthakis, V. I. Kinetic model reduction using genetic algorithms, Comput. Chem. Eng., 1998, 22, 239-246.
-
Edwards, K., Edgar, T. F. and Maousiouthakis, V. I. Kinetic model reduction using genetic algorithms," Comput. Chem. Eng., 1998, 22, 239-246.
-
-
-
-
10
-
-
0242574982
-
Parameter estimation in biochemical pathways: A comparison of global optimization methods
-
Moles, C. G., Mendes, P. and Banga, J. R. "Parameter estimation in biochemical pathways: a comparison of global optimization methods," Genome Res., 2003, 13, 2467-2474.
-
(2003)
Genome Res
, vol.13
, pp. 2467-2474
-
-
Moles, C.G.1
Mendes, P.2
Banga, J.R.3
-
11
-
-
4444351989
-
Decoupling dynamic systems for pathway identification from metabolic profiles
-
Voit, E. O. and Almeida, J. S. "Decoupling dynamic systems for pathway identification from metabolic profiles," Bioinformatics, 2004, 20, 1670-1681
-
(2004)
Bioinformatics
, vol.20
, pp. 1670-1681
-
-
Voit, E.O.1
Almeida, J.S.2
-
12
-
-
20144387371
-
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm
-
Kimura, S., Ide, K., Kashihara, A., Kano, M., Mariko, H., Masui, R., Nakagawa, N. Yokoyama, S., Kuramitsu, S. and Konagaya, A. "Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm," Bioinformatics, 2005, 21, 1154-1163.
-
(2005)
Bioinformatics
, vol.21
, pp. 1154-1163
-
-
Kimura, S.1
Ide, K.2
Kashihara, A.3
Kano, M.4
Mariko, H.5
Masui, R.6
Nakagawa, N.7
Yokoyama, S.8
Kuramitsu, S.9
Konagaya, A.10
-
13
-
-
4344710012
-
Inference of genetic network using the expression profile time course data of mouse P19 cells
-
Maki, Y., Ueda, T. and Okamoto, M." Inference of genetic network using the expression profile time course data of mouse P19 cells," Chem-Bio Informatics J., 2002, 13, 382-383.
-
(2002)
Chem-Bio Informatics J
, vol.13
, pp. 382-383
-
-
Maki, Y.1
Ueda, T.2
Okamoto, M.3
-
14
-
-
16344364990
-
Inference of S-system models of genetic networks from noisy time-series data
-
Kimura, S. Hatakeyama, M. and Konagaya, A. "Inference of S-system models of genetic networks from noisy time-series data," Chem-Bio Informatics J., 2004, 4, 1-14.
-
(2004)
Chem-Bio Informatics J
, vol.4
, pp. 1-14
-
-
Kimura, S.1
Hatakeyama, M.2
Konagaya, A.3
-
15
-
-
0037461033
-
Dynamic modeling of genetic algorithm and S-system
-
Kikuchi, S., Tominaga, D., Arita, M., Takahashi, K. and Tomita, M. "Dynamic modeling of genetic algorithm and S-system," Bioinformatics, 2003, 19, 643-650.
-
(2003)
Bioinformatics
, vol.19
, pp. 643-650
-
-
Kikuchi, S.1
Tominaga, D.2
Arita, M.3
Takahashi, K.4
Tomita, M.5
-
16
-
-
32444432616
-
Inference of gene regulatory networks using S-system and differential evolution
-
Noman, N. and Iba, H. "Inference of gene regulatory networks using S-system and differential evolution," GECCO 2005: Proceedings of the 8th annual conference on Genetic and evolutionary computation, 2005, 1, 439-446.
-
(2005)
GECCO 2005: Proceedings of the 8th annual conference on Genetic and evolutionary computation
, vol.1
, pp. 439-446
-
-
Noman, N.1
Iba, H.2
-
18
-
-
27144551934
-
Evolutionary divide-and-conquer approach to inferring S-system models of genetic networks
-
Ho S. Y., Hsieh C. H., Yu, F. C., and Huang H. L. "Evolutionary divide-and-conquer approach to inferring S-system models of genetic networks," Proceedings of the 2005 IEEE Congress on Evolutionary Computation, 2005, 1, 691-698.
-
(2005)
Proceedings of the 2005 IEEE Congress on Evolutionary Computation
, vol.1
, pp. 691-698
-
-
Ho, S.Y.1
Hsieh, C.H.2
Yu, F.C.3
Huang, H.L.4
-
19
-
-
0034547980
-
A modified collocation method for solving differential-algebraic equations
-
Wang, F.S. "A modified collocation method for solving differential-algebraic equations," Applied Mathematics and Computation, 2000, 116, 257-278.
-
(2000)
Applied Mathematics and Computation
, vol.116
, pp. 257-278
-
-
Wang, F.S.1
-
20
-
-
4344592548
-
Neural-network-based parameter estimation in S-system models of biological networks
-
Almeida, J. S. and Voit, E. O." Neural-network-based parameter estimation in S-system models of biological networks," Genome Informatics, 2003, 14, 114-123.
-
(2003)
Genome Informatics
, vol.14
, pp. 114-123
-
-
Almeida, J.S.1
Voit, E.O.2
-
21
-
-
34248385237
-
Multiobjective optimization in bioinformatics and computational biology
-
Handl, J., Kelt, D. B., Knowles, J. Multiobjective optimization in bioinformatics and computational biology," IEEE/ACM Transcations on Computational Biology and Bioinformatics, 2007, 4, 279-292.
-
(2007)
IEEE/ACM Transcations on Computational Biology and Bioinformatics
, vol.4
, pp. 279-292
-
-
Handl, J.1
Kelt, D.B.2
Knowles, J.3
-
22
-
-
0004262557
-
-
Academic Press, New York
-
Sawaragi, Y., Nakayama, H., Tanino, T. Theory of Multiobjective Optimization, Academic Press, 1985, New York
-
(1985)
Theory of Multiobjective Optimization
-
-
Sawaragi, Y.1
Nakayama, H.2
Tanino, T.3
-
23
-
-
0142000477
-
Differential evolution: A simple and efficient heuristic for global optimization over continuous spaces
-
Storn, R. and Price, K. V. "Differential evolution: a simple and efficient heuristic for global optimization over continuous spaces," J. Global Optimiz., 1997, 11, 341-359.
-
(1997)
J. Global Optimiz
, vol.11
, pp. 341-359
-
-
Storn, R.1
Price, K.V.2
-
24
-
-
0032137127
-
Fuzzy-decision-making problems of fuel ethanol production using a genetically engineering yeast
-
Wang, F. S., Jing, C. H. and Tsao, G. T. "Fuzzy-decision-making problems of fuel ethanol production using a genetically engineering yeast," Ind. Eng. Chem. Res., 1998, 37, 3434-3443.
-
(1998)
Ind. Eng. Chem. Res
, vol.37
, pp. 3434-3443
-
-
Wang, F.S.1
Jing, C.H.2
Tsao, G.T.3
-
25
-
-
0033924441
-
Multiobjective parameter estimation problems of fermentation processes using a high ethanol tolerance yeast
-
Wang, F. S. and Sheu, J. W. "Multiobjective parameter estimation problems of fermentation processes using a high ethanol tolerance yeast," Chem. Eng. Sci., 2000, 55, 3685-3695.
-
(2000)
Chem. Eng. Sci
, vol.55
, pp. 3685-3695
-
-
Wang, F.S.1
Sheu, J.W.2
-
26
-
-
0035958144
-
Hybrid differential evolution for problems of kinetic parameter estimation and dynamic optimization of an ethanol fermentation process
-
Wang, F. S., Su, T. L., and Jang, H. J. "Hybrid differential evolution for problems of kinetic parameter estimation and dynamic optimization of an ethanol fermentation process," Ind. Eng. Chem. Res., 2001, 40, 2876-2885
-
(2001)
Ind. Eng. Chem. Res
, vol.40
, pp. 2876-2885
-
-
Wang, F.S.1
Su, T.L.2
Jang, H.J.3
-
27
-
-
0033544450
-
Hybrid method of evolution algorithms for static and dynamic optimization problems with application to a fedbatch fermentation process
-
Chiou, J.P. and Wang, F.S. "Hybrid method of evolution algorithms for static and dynamic optimization problems with application to a fedbatch fermentation process," Computers and Chemical Engineering, 1999, 23, 1277-1291.
-
(1999)
Computers and Chemical Engineering
, vol.23
, pp. 1277-1291
-
-
Chiou, J.P.1
Wang, F.S.2
-
28
-
-
0030002954
-
Rules for coupled expression of regulator and effector genes in inducible circuits
-
Hlavacek, W. S. and Savageau, M. A. "Rules for coupled expression of regulator and effector genes in inducible circuits," J Mol. Biol., 1996, 255, 121-139.
-
(1996)
J Mol. Biol
, vol.255
, pp. 121-139
-
-
Hlavacek, W.S.1
Savageau, M.A.2
-
29
-
-
33846418399
-
Zebrafish as a powerful vertebrate model system for in vivo studies of cell death
-
Pyati, U. J., Look, A. T., Hammerschmidt, M. "Zebrafish as a powerful vertebrate model system for in vivo studies of cell death," Seminars in Cancer Biology, 2007, 17, 154-165.
-
(2007)
Seminars in Cancer Biology
, vol.17
, pp. 154-165
-
-
Pyati, U.J.1
Look, A.T.2
Hammerschmidt, M.3
-
30
-
-
0036527963
-
Zebrafish as a cancer model system
-
Amatruda, J. F., Shepard, J. L., Stern, H. M., and Zon, L. I. "Zebrafish as a cancer model system," CANCER CELL, 2002, 1, 1-3.
-
(2002)
CANCER CELL
, vol.1
, pp. 1-3
-
-
Amatruda, J.F.1
Shepard, J.L.2
Stern, H.M.3
Zon, L.I.4
-
31
-
-
0029863315
-
Modular cis-regulatory organization of Endo 16, a gut-specific gene of the sea urchin embryo
-
Yuh, C. H. and Davidson, E. H. "Modular cis-regulatory organization of Endo 16, a gut-specific gene of the sea urchin embryo," Development, 1996, 122, 1069-1082.
-
(1996)
Development
, vol.122
, pp. 1069-1082
-
-
Yuh, C.H.1
Davidson, E.H.2
-
32
-
-
0032549745
-
Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
-
Yuh, C. H. Bolouri, H., and Davidson, E. H. "Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene," Science, 1998, 279, 1896-1902.
-
(1998)
Science
, vol.279
, pp. 1896-1902
-
-
Yuh, C.H.1
Bolouri, H.2
Davidson, E.H.3
-
33
-
-
0035094449
-
Cis-regulatory logic in the endo 16gene: Switching from a specification to a differentiation mode of control
-
Yuh, C. H., Bolouri, H., and Davidson, E. H. "Cis-regulatory logic in the endo 16gene: switching from a specification to a differentiation mode of control," Development, 2001, 128, 617-629.
-
(2001)
Development
, vol.128
, pp. 617-629
-
-
Yuh, C.H.1
Bolouri, H.2
Davidson, E.H.3
-
34
-
-
19344363949
-
Brn1/2/4, the predicted midgut regulator of the endo16 gene of the sea urchin embryo
-
Yuh, C. H., Dorman, E. R., and Davidson, E. H. "Brn1/2/4, the predicted midgut regulator of the endo16 gene of the sea urchin embryo," Developmental Biology, 2005, 281, 286-298.
-
(2005)
Developmental Biology
, vol.281
, pp. 286-298
-
-
Yuh, C.H.1
Dorman, E.R.2
Davidson, E.H.3
|