-
1
-
-
0033677274
-
Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function
-
Akutsu,T, Miyano,S. and Kuhara,S. (2000) Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. J. Comput. Biol., 7, 331-343.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 331-343
-
-
Akutsu, T.1
Miyano, S.2
Kuhara, S.3
-
2
-
-
0033828273
-
Systemic properties of ensembles of metabolic networks: Application of graphical and statistical methods to simple unbranched pathways
-
Alves,R. and Savageau,M.A. (2000) Systemic properties of ensembles of metabolic networks: application of graphical and statistical methods to simple unbranched pathways. Bioinformatics, 16, 534-547.
-
(2000)
Bioinformatics
, vol.16
, pp. 534-547
-
-
Alves, R.1
Savageau, M.A.2
-
3
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells
-
Arkin,A., Ross,J. and McAdams,H.H. (1998) Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells. Genetics, 149, 1633-1648.
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
4
-
-
0033736476
-
Genetic network inference: From co-expression clustering to reverse engineering
-
D'haeseleer,P., Liang,S. and Somogyi,R. (2000) Genetic network inference: from co-expression clustering to reverse engineering. Bioinformatics, 16, 707-726.
-
(2000)
Bioinformatics
, vol.16
, pp. 707-726
-
-
D'haeseleer, P.1
Liang, S.2
Somogyi, R.3
-
5
-
-
0029096741
-
Genetic-algorithm selection of a regulatory structure that directs flux in a simple metabolic model
-
Gilman,A. and Ross,J. (1995) Genetic-algorithm selection of a regulatory structure that directs flux in a simple metabolic model. Biophys. J., 69, 1321-1333.
-
(1995)
Biophys. J.
, vol.69
, pp. 1321-1333
-
-
Gilman, A.1
Ross, J.2
-
8
-
-
0030002954
-
Rules for coupled expression of regulator and effector genes in inducible circuits
-
Hlavacek,W.S. and Savageau,M.A. (1996) Rules for coupled expression of regulator and effector genes in inducible circuits. J. Mol. Biol., 255, 121-139.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 121-139
-
-
Hlavacek, W.S.1
Savageau, M.A.2
-
9
-
-
0035852785
-
Dynamic modeling of gene expression data
-
Holter,N.S., Maritan,A., Cieplak,M., Fedoroff,N.V. and Banavar,J.R. (2001) Dynamic modeling of gene expression data. Proc. Natl Acad. Sci. USA, 98, 1693-1698.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 1693-1698
-
-
Holter, N.S.1
Maritan, A.2
Cieplak, M.3
Fedoroff, N.V.4
Banavar, J.R.5
-
10
-
-
0025445207
-
Efficient solution of nonlinear ordinary differential equations expressed in S-system canonical form
-
Irvine,D.H. and Savageau,M.A. (1990) Efficient solution of nonlinear ordinary differential equations expressed in S-system canonical form. SIAM J. Numer. Anal., 27, 704-735.
-
(1990)
SIAM J. Numer. Anal.
, vol.27
, pp. 704-735
-
-
Irvine, D.H.1
Savageau, M.A.2
-
11
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
Jong,H.D. (2002) Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol., 9, 67-103.
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 67-103
-
-
Jong, H.D.1
-
13
-
-
0012911079
-
Genetic networks prediction using S-system optimized by GA
-
pp. MPS-37-4 (in Japanese)
-
Kikuchi,S., Tominaga,D., Arita,M. and Tomita,M. (2001) Genetic networks prediction using S-system optimized by GA. In Proceedings of IPSJ meetings. pp. MPS-37-4 (in Japanese).
-
(2001)
Proceedings of IPSJ Meetings
-
-
Kikuchi, S.1
Tominaga, D.2
Arita, M.3
Tomita, M.4
-
14
-
-
0001441372
-
Probable networks and plausible prediction - A review of practical Bayesian methods for supervised neural networks
-
Mackay,D.J.C. (1995) Probable networks and plausible prediction - a review of practical Bayesian methods for supervised neural networks. Network: Computation in Neural Systems, 6, 469-505.
-
(1995)
Network: Computation in Neural Systems
, vol.6
, pp. 469-505
-
-
Mackay, D.J.C.1
-
15
-
-
0035221090
-
Development of a system for the inference of large scale genetic networks
-
Maki,Y., Tominaga,D., Okamoto,M., Watanabe,S. and Eguchi,Y. (2001) Development of a system for the inference of large scale genetic networks. In Proceedings of the Pacific Symposium on Biocomputing. pp. 446-458.
-
(2001)
Proceedings of the Pacific Symposium on Biocomputing
, pp. 446-458
-
-
Maki, Y.1
Tominaga, D.2
Okamoto, M.3
Watanabe, S.4
Eguchi, Y.5
-
16
-
-
0031053177
-
Application of genetic algorithms to parameter estimation of bioprocesses
-
Park,L.J., Park,C.H., Park,C. and Lee,T. (1997) Application of genetic algorithms to parameter estimation of bioprocesses. Med. Biol. Eng. Comput., 35, 47-49.
-
(1997)
Med. Biol. Eng. Comput.
, vol.35
, pp. 47-49
-
-
Park, L.J.1
Park, C.H.2
Park, C.3
Lee, T.4
-
17
-
-
0034606674
-
Modeling of biological process using self-cycling fermentation and genetic algorithm
-
Pinchuk,J., Brown,W.A., Hughes,S.M. and Cooper,D.G. (2000) Modeling of biological process using self-cycling fermentation and genetic algorithm. Biotechnol. Bioeng., 67, 19-24.
-
(2000)
Biotechnol. Bioeng.
, vol.67
, pp. 19-24
-
-
Pinchuk, J.1
Brown, W.A.2
Hughes, S.M.3
Cooper, D.G.4
-
18
-
-
0028897360
-
Mechanism of eve stripe formation
-
Reinitz,J. and Sharp,D.H. (1995) Mechanism of eve stripe formation. Mech. Dev., 49, 133-158.
-
(1995)
Mech. Dev.
, vol.49
, pp. 133-158
-
-
Reinitz, J.1
Sharp, D.H.2
-
20
-
-
0026495410
-
The tricarboxylic acid cycle in Dictyostelium discoideum
-
Shiraishi,F. and Savageau,M.A. (1992) The tricarboxylic acid cycle in Dictyostelium discoideum. J. Biol. Chem., 267, 22912-22943.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 22912-22943
-
-
Shiraishi, F.1
Savageau, M.A.2
-
23
-
-
0033031386
-
E-CELL: Software environment for whole-cell simulation
-
Tomita,M., Hashimoto,K., Takahashi,K., Shimizu,T.S., Matsuzaki,Y., Miyoshi,F., Saito,K., Tanida,S., Yugi,K., Venter,J.C. and Hutchison,C.A. (1999) E-CELL: Software environment for whole-cell simulation. Bioinformatics, 15, 72-84.
-
(1999)
Bioinformatics
, vol.15
, pp. 72-84
-
-
Tomita, M.1
Hashimoto, K.2
Takahashi, K.3
Shimizu, T.S.4
Matsuzaki, Y.5
Miyoshi, F.6
Saito, K.7
Tanida, S.8
Yugi, K.9
Venter, J.C.10
Hutchison, C.A.11
-
26
-
-
0034520437
-
Biochemical systems analysis of genome-wide expression data
-
Voit,E.O. and Radivoyevitch,T. (2000) Biochemical systems analysis of genome-wide expression data. Bioinformatics, 16, 1023-1037.
-
(2000)
Bioinformatics
, vol.16
, pp. 1023-1037
-
-
Voit, E.O.1
Radivoyevitch, T.2
-
27
-
-
0000673452
-
Bayesian regularization and pruning using a Laplace prior
-
Williams,P.M. (1995) Bayesian regularization and pruning using a Laplace prior. Neural Computat., 7, 117-143.
-
(1995)
Neural Computat.
, vol.7
, pp. 117-143
-
-
Williams, P.M.1
|