-
1
-
-
33344477448
-
Genomics of microRNA
-
Kim VN, Nam JW (2006) Genomics of microRNA. Trends Genet 22: 165-173.
-
(2006)
Trends Genet
, vol.22
, pp. 165-173
-
-
Kim, V.N.1
Nam, J.W.2
-
2
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Lewis BP, Burge CB, Bartel DP (2005) Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120: 15-20.
-
(2005)
Cell
, vol.120
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
3
-
-
18044377963
-
Principles of microRNA-target recognition
-
doi:10.1371/journal.pbio.0030085
-
Brennecke J, Stark A, Russell RB, Cohen SM (2005) Principles of microRNA-target recognition. PLoS Biol 3: e85. doi:10.1371/journal.pbio.0030085.
-
(2005)
PLoS Biol
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
4
-
-
33745248430
-
MicroRNA target predictions in animals
-
Rajewsky N (2006) MicroRNA target predictions in animals. Nat Genet 38: S8-S13.
-
(2006)
Nat Genet
, vol.38
-
-
Rajewsky, N.1
-
5
-
-
0038444122
-
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells
-
Elkon R, Linhart C, Sharan R, Shamir R, Shiloh Y (2003) Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells. Genome Res 13: 773-780.
-
(2003)
Genome Res
, vol.13
, pp. 773-780
-
-
Elkon, R.1
Linhart, C.2
Sharan, R.3
Shamir, R.4
Shiloh, Y.5
-
6
-
-
0034785443
-
Identifying regulatory networks by combinatorial analysis of promoter elements
-
Pilpel Y, Sudarsanam P, Church GM (2001) Identifying regulatory networks by combinatorial analysis of promoter elements. Nat Genet 29: 153-159.
-
(2001)
Nat Genet
, vol.29
, pp. 153-159
-
-
Pilpel, Y.1
Sudarsanam, P.2
Church, G.M.3
-
7
-
-
2442446708
-
Genome-wide discovery of transcriptional modules from DNA sequence and gene expression
-
Segal E, Yelensky R, Koller D (2003) Genome-wide discovery of transcriptional modules from DNA sequence and gene expression. Bioinformatics 19: i273-i282.
-
(2003)
Bioinformatics
, vol.19
-
-
Segal, E.1
Yelensky, R.2
Koller, D.3
-
8
-
-
33646029456
-
Stability regulation of mRNA and the control of gene expression
-
Cheadle C, Fan J, Cho-Chung YS, Werner T, Ray J, et al. (2005) Stability regulation of mRNA and the control of gene expression. Ann N Y Acad Sci 1058: 196-204.
-
(2005)
Ann N Y Acad Sci
, vol.1058
, pp. 196-204
-
-
Cheadle, C.1
Fan, J.2
Cho-Chung, Y.S.3
Werner, T.4
Ray, J.5
-
9
-
-
29144505309
-
The widespread impact of mammalian microRNAs on mRNA repression and evolution
-
Farh KK, Grimson A, Jan C, Lewis BP, Johnston WK, et al. (2005) The widespread impact of mammalian microRNAs on mRNA repression and evolution. Science 310: 1817-1821.
-
(2005)
Science
, vol.310
, pp. 1817-1821
-
-
Farh, K.K.1
Grimson, A.2
Jan, C.3
Lewis, B.P.4
Johnston, W.K.5
-
10
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim LP, Lau NC, Garrett-Engele P, Grimson A, Schelter JM, et al. (2005) Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 433: 769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
-
11
-
-
40749101545
-
-
PLoS, doi:10.1371/journal.pone.0000804
-
Liu T, Papagiannakopoulos T, Puskar K, Qi S, Santiago F, et al. (2007) Detection of a microRNA signal in an in vivo expression set of mRNAs. PLoS ONE 2: e804. doi:10.1371/journal.pone.0000804.
-
(2007)
Detection of a microRNA signal in an in vivo expression set of mRNAs
, vol.ONE 2
-
-
Liu, T.1
Papagiannakopoulos, T.2
Puskar, K.3
Qi, S.4
Santiago, F.5
-
12
-
-
34249819336
-
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals
-
Tsang J, Zhu J, van Oudenaarden A (2007) MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. Mol Cell 26: 753-767.
-
(2007)
Mol Cell
, vol.26
, pp. 753-767
-
-
Tsang, J.1
Zhu, J.2
van Oudenaarden, A.3
-
13
-
-
36749005527
-
Using expression profiling data to identify human microRNA targets
-
Huang JC, Babak T, Corson TW, Chua G, Khan S, et al. (2007) Using expression profiling data to identify human microRNA targets. Nat Methods 4: 1045-1049.
-
(2007)
Nat Methods
, vol.4
, pp. 1045-1049
-
-
Huang, J.C.1
Babak, T.2
Corson, T.W.3
Chua, G.4
Khan, S.5
-
14
-
-
33644499134
-
Cell-type-specific signatures of microRNAs on target mRNA expression
-
Sood P, Krek A, Zavolan M, Macino G, Rajewsky N (2006) Cell-type-specific signatures of microRNAs on target mRNA expression. Proc Natl Acad Sci U S A 103: 2746-2751.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2746-2751
-
-
Sood, P.1
Krek, A.2
Zavolan, M.3
Macino, G.4
Rajewsky, N.5
-
15
-
-
0346727524
-
MicroRNAs modulate hematopoietic lineage differentiation
-
Chen CZ, Li L, Lodish HF, Bartel DP (2004) MicroRNAs modulate hematopoietic lineage differentiation. Science 303: 83-86.
-
(2004)
Science
, vol.303
, pp. 83-86
-
-
Chen, C.Z.1
Li, L.2
Lodish, H.F.3
Bartel, D.P.4
-
16
-
-
29144440077
-
MicroRNAs 221 and 222 inhibit normal erythropoiesis and erythroleukemic cell growth via kit receptor down-modulation
-
Felli N, Fontana L, Pelosi E, Botta R, Bonci D, et al. (2005) MicroRNAs 221 and 222 inhibit normal erythropoiesis and erythroleukemic cell growth via kit receptor down-modulation. Proc Natl Acad Sci U S A 102: 18081-18086.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 18081-18086
-
-
Felli, N.1
Fontana, L.2
Pelosi, E.3
Botta, R.4
Bonci, D.5
-
17
-
-
33847304124
-
CD34+ hematopoietic stem-progenitor cell microRNA expression and function: A circuit diagram of differentiation control
-
Georgantas RW 3rd, Hildreth R, Morisot S, Alder J, Liu CG, et al. (2007) CD34+ hematopoietic stem-progenitor cell microRNA expression and function: a circuit diagram of differentiation control. Proc Natl Acad Sci U S A 104: 2750-2755.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 2750-2755
-
-
Georgantas 3rd, R.W.1
Hildreth, R.2
Morisot, S.3
Alder, J.4
Liu, C.G.5
-
18
-
-
28344438648
-
A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis
-
Fazi F, Rosa A, Fatica A, Gelmetti V, De Marchis ML, et al. (2005) A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis. Cell 123: 819-831.
-
(2005)
Cell
, vol.123
, pp. 819-831
-
-
Fazi, F.1
Rosa, A.2
Fatica, A.3
Gelmetti, V.4
De Marchis, M.L.5
-
19
-
-
9144226389
-
Molecular signatures of self-renewal, differentiation, and lineage choice in multipotential hemopoietic progenitor cells in vitro
-
Bruno L, Hoffmann R, McBlane F, Brown J, Gupta R, et al. (2004) Molecular signatures of self-renewal, differentiation, and lineage choice in multipotential hemopoietic progenitor cells in vitro. Mol Cell Biol 24: 741-756.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 741-756
-
-
Bruno, L.1
Hoffmann, R.2
McBlane, F.3
Brown, J.4
Gupta, R.5
-
20
-
-
25444531992
-
Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips
-
van Ruissen F, Ruijter JM, Schaaf GJ, Asgharnegad L, Zwijnenburg DA, et al. (2005) Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips. BMC Genomics 6: 91.
-
(2005)
BMC Genomics
, vol.6
, pp. 91
-
-
van Ruissen, F.1
Ruijter, J.M.2
Schaaf, G.J.3
Asgharnegad, L.4
Zwijnenburg, D.A.5
-
21
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, et al. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30: e15.
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
-
22
-
-
45249111019
-
Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3′ expression arrays
-
Pradervand S, Paillusson A, Thomas J, Weber J, Wirapati P, et al. (2008) Affymetrix Whole-Transcript Human Gene 1.0 ST array is highly concordant with standard 3′ expression arrays. Biotechniques 44: 759-762.
-
(2008)
Biotechniques
, vol.44
, pp. 759-762
-
-
Pradervand, S.1
Paillusson, A.2
Thomas, J.3
Weber, J.4
Wirapati, P.5
-
23
-
-
34247584465
-
Requirement of bic/microRNA-155 for normal immune function
-
Rodriguez A, Vigorito E, Clare S, Warren MV, Couttet P, et al. (2007) Requirement of bic/microRNA-155 for normal immune function. Science 316: 608-611.
-
(2007)
Science
, vol.316
, pp. 608-611
-
-
Rodriguez, A.1
Vigorito, E.2
Clare, S.3
Warren, M.V.4
Couttet, P.5
-
24
-
-
4344671912
-
Gene expression profiles during human CD4+ T cell differentiation
-
Lee MS, Hanspers K, Barker CS, Korn AP, McCune JM (2004) Gene expression profiles during human CD4+ T cell differentiation. Int Immunol 16: 1109-1124.
-
(2004)
Int Immunol
, vol.16
, pp. 1109-1124
-
-
Lee, M.S.1
Hanspers, K.2
Barker, C.S.3
Korn, A.P.4
McCune, J.M.5
-
25
-
-
33947721625
-
miR-181a is an intrinsic modulator of T cell sensitivity and selection
-
Li QJ, Chau J, Ebert PJ, Sylvester G, Min H, et al. (2007) miR-181a is an intrinsic modulator of T cell sensitivity and selection. Cell 129: 147-161.
-
(2007)
Cell
, vol.129
, pp. 147-161
-
-
Li, Q.J.1
Chau, J.2
Ebert, P.J.3
Sylvester, G.4
Min, H.5
-
26
-
-
34250879111
-
Oncogenic potential of the miR-106-363 cluster and its implication in human T-cell leukemia
-
Landais S, Landry S, Legault P, Rassart E (2007) Oncogenic potential of the miR-106-363 cluster and its implication in human T-cell leukemia. Cancer Res 67: 5699-5707.
-
(2007)
Cancer Res
, vol.67
, pp. 5699-5707
-
-
Landais, S.1
Landry, S.2
Legault, P.3
Rassart, E.4
-
27
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, et al. (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 31: e15.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
-
28
-
-
33747885673
-
Bioconductor: An open source framework for bioinformatics and computational biology
-
Reimers M, Carey VJ (2006) Bioconductor: an open source framework for bioinformatics and computational biology. Methods Enzymol 411: 119-134.
-
(2006)
Methods Enzymol
, vol.411
, pp. 119-134
-
-
Reimers, M.1
Carey, V.J.2
-
29
-
-
38549176691
-
-
Flicek P, Aken BL, Beal K, Ballester B, Caccamo M, et al. (2008) Ensembl 2008. Nucleic Acids Res 36: D707-D714.
-
(2008)
Ensembl 2008. Nucleic Acids Res
, vol.36
-
-
Flicek, P.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
|