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Volumn 9, Issue , 2008, Pages

A comparative computational analysis of nonautonomous Helitron elements between maize and rice

Author keywords

[No Author keywords available]

Indexed keywords

PALINDROMIC DNA; PLANT DNA; VEGETABLE PROTEIN;

EID: 55149109698     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-467     Document Type: Article
Times cited : (33)

References (39)
  • 2
    • 0029583698 scopus 로고
    • LTR-retrotransposons and MITES: Important players in the evolution of plant genomes
    • Wessler SR Bureau TE SE W LTR-retrotransposons and MITES: Important players in the evolution of plant genomes Current Opinion in Plant Biology 1995, 5:814-821.
    • (1995) Current Opinion in Plant Biology , vol.5 , pp. 814-821
    • Wessler, S.R.1    Bureau, T.E.S.E.W.2
  • 3
    • 0024979279 scopus 로고
    • About maize transposable elements and development
    • Federoff About maize transposable elements and development Cell 1989, 181-191.
    • (1989) Cell , pp. 181-191
    • Federoff1
  • 4
    • 0024712976 scopus 로고
    • Structure and Coding Properties of Bs1, a Maize Retrovirus-Like Transposon
    • 297812 2474829
    • Jin Y-K Bennetzen JL Structure and Coding Properties of Bs1, a Maize Retrovirus-Like Transposon PNAS 1989, 86:6235-6239. 297812 2474829
    • (1989) PNAS , vol.86 , pp. 6235-6239
    • Jin, Y.-K.1    Bennetzen, J.L.2
  • 5
  • 7
    • 0035902449 scopus 로고    scopus 로고
    • Rolling-circle transposons in eukaryotes
    • 37501 11447285
    • Kapitonov VV Jurka J Rolling-circle transposons in eukaryotes PNAS 2001, 98:8714-8719. 37501 11447285
    • (2001) PNAS , vol.98 , pp. 8714-8719
    • Kapitonov, V.V.1    Jurka, J.2
  • 9
    • 28344433379 scopus 로고    scopus 로고
    • Plant genomes: Massive changes of the maize genome are caused by Helitrons
    • 16222326
    • Lal SK Hannah LC Plant genomes: Massive changes of the maize genome are caused by Helitrons Heredity 2005, 95:421-422. 16222326
    • (2005) Heredity , vol.95 , pp. 421-422
    • Lal, S.K.1    Hannah, L.C.2
  • 10
    • 34848876954 scopus 로고    scopus 로고
    • Helitrons on a roll: Eukaryotic rolling-circle transposons
    • 17850916
    • Kapitonov VV Jurka J Helitrons on a roll: Eukaryotic rolling-circle transposons Trends Genet 2007, 23:521-529. 17850916
    • (2007) Trends Genet , vol.23 , pp. 521-529
    • Kapitonov, V.V.1    Jurka, J.2
  • 11
    • 33846931279 scopus 로고    scopus 로고
    • Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
    • 1794268 17261799
    • Pritham EJ Feschotte C Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus Proc Natl Acad Sci USA 2007, 104:1895-1900. 1794268 17261799
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 1895-1900
    • Pritham, E.J.1    Feschotte, C.2
  • 12
    • 20344407697 scopus 로고    scopus 로고
    • Evolution of DNA sequence nonhomologies among maize inbreds
    • 548811 15659640
    • Brunner S Fengler K Morgante M Tingey S Rafalski A Evolution of DNA sequence nonhomologies among maize inbreds Plant Cell 2005, 17:343-360. 548811 15659640
    • (2005) Plant Cell , vol.17 , pp. 343-360
    • Brunner, S.1    Fengler, K.2    Morgante, M.3    Tingey, S.4    Rafalski, A.5
  • 13
    • 0042307299 scopus 로고    scopus 로고
    • Gene expression of a gene family in maize based on noncollinear haplotypes
    • 166437 12853580
    • Song R Messing J Gene expression of a gene family in maize based on noncollinear haplotypes PNAS 2003, 100:9055-9060. 166437 12853580
    • (2003) PNAS , vol.100 , pp. 9055-9060
    • Song, R.1    Messing, J.2
  • 14
    • 0037047037 scopus 로고    scopus 로고
    • Intraspecific violation of genetic colinearity and its implications in maize
    • 123182 12060715
    • Fu H Dooner HK Intraspecific violation of genetic colinearity and its implications in maize PNAS 2002, 99:9573-9578. 123182 12060715
    • (2002) PNAS , vol.99 , pp. 9573-9578
    • Fu, H.1    Dooner, H.K.2
  • 15
    • 27444432817 scopus 로고    scopus 로고
    • Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize
    • 16146520
    • Brunner S Pea G Rafalski A Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize Plant J 2005, 43:799-810. 16146520
    • (2005) Plant J , vol.43 , pp. 799-810
    • Brunner, S.1    Pea, G.2    Rafalski, A.3
  • 16
    • 25144488228 scopus 로고    scopus 로고
    • Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
    • 16056225
    • Morgante M Brunner S Pea G Fengler K Zuccolo A Rafalski A Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize Nat Genet 2005, 37:997-1002. 16056225
    • (2005) Nat Genet , vol.37 , pp. 997-1002
    • Morgante, M.1    Brunner, S.2    Pea, G.3    Fengler, K.4    Zuccolo, A.5    Rafalski, A.6
  • 17
    • 17844406653 scopus 로고    scopus 로고
    • A novel class of Helitron- related transposable elements in maize contain portions of multiple pseudogenes
    • 15821872
    • Gupta S Gallavotti A Stryker GA Schmidt RJ Lal SK A novel class of Helitron- related transposable elements in maize contain portions of multiple pseudogenes Plant Molecular Biology 2005, 57:115-127. 15821872
    • (2005) Plant Molecular Biology , vol.57 , pp. 115-127
    • Gupta, S.1    Gallavotti, A.2    Stryker, G.A.3    Schmidt, R.J.4    Lal, S.K.5
  • 18
    • 21144454436 scopus 로고    scopus 로고
    • Gene movement by Helitron transposons contributes to the haplotype variability of maize
    • 1157042 15951422
    • Lai J Li Y Messing J Dooner HK Gene movement by Helitron transposons contributes to the haplotype variability of maize PNAS 2005, 102:9068-9073. 1157042 15951422
    • (2005) PNAS , vol.102 , pp. 9068-9073
    • Lai, J.1    Li, Y.2    Messing, J.3    Dooner, H.K.4
  • 19
    • 1042307072 scopus 로고    scopus 로고
    • Transposon diversity in Arabidopsis thaliana
    • 16553 10861007
    • Le QH Wright S Yu Z Bureau T Transposon diversity in Arabidopsis thaliana Proc Natl Acad Sci USA 2000, 97:7376-7381. 16553 10861007
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 7376-7381
    • Le, Q.H.1    Wright, S.2    Yu, Z.3    Bureau, T.4
  • 20
    • 35848941492 scopus 로고    scopus 로고
    • Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana
    • 17890239
    • Hollister JD Gaut BS Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana Mol Biol Evol 2007, 24:2515-2524. 17890239
    • (2007) Mol Biol Evol , vol.24 , pp. 2515-2524
    • Hollister, J.D.1    Gaut, B.S.2
  • 21
    • 33845215653 scopus 로고    scopus 로고
    • Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus
    • 1693800 17101975
    • Wang Q Dooner HK Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus Proc Natl Acad Sci USA 2006, 103:17644-17649. 1693800 17101975
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 17644-17649
    • Wang, Q.1    Dooner, H.K.2
  • 22
    • 21144454436 scopus 로고    scopus 로고
    • Gene movement by Helitron transposons contributes to the haplotype variability of maize
    • 1157042 15951422
    • Lai J Li Y Messing J Dooner HK Gene movement by Helitron transposons contributes to the haplotype variability of maize Proc Natl Acad Sci USA 2005, 102:9068-9073. 1157042 15951422
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9068-9073
    • Lai, J.1    Li, Y.2    Messing, J.3    Dooner, H.K.4
  • 23
    • 40549086282 scopus 로고    scopus 로고
    • Computational prediction and molecular confirmation of Helitron transposons in the maize genome
    • 2267711 18226261
    • Du C Caronna J He L Dooner HK Computational prediction and molecular confirmation of Helitron transposons in the maize genome BMC Genomics 2008, 9:51. 2267711 18226261
    • (2008) BMC Genomics , vol.9 , pp. 51
    • Du, C.1    Caronna, J.2    He, L.3    Dooner, H.K.4
  • 25
    • 4344616881 scopus 로고    scopus 로고
    • Rapid recent growth and divergence of rice nuclear genomes
    • 515075 15240870
    • Ma J Bennetzen JL Rapid recent growth and divergence of rice nuclear genomes Proc Natl Acad Sci USA 2004, 101:12404-12410. 515075 15240870
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 12404-12410
    • Ma, J.1    Bennetzen, J.L.2
  • 26
    • 38248999763 scopus 로고
    • Efficient labeling algorithms for the maximum noncrossing matching problem
    • Malucelli F Ottmann T Pretolani D Efficient labeling algorithms for the maximum noncrossing matching problem Discrete Appl Math 1993, 47:175-179.
    • (1993) Discrete Appl Math , vol.47 , pp. 175-179
    • Malucelli, F.1    Ottmann, T.2    Pretolani, D.3
  • 27
    • 33747831169 scopus 로고    scopus 로고
    • Domain organization within repeated DNA sequences: Application to the study of a family of transposable elements
    • 16809391
    • Tempel S Giraud M Lavenier D Lerman IC Valin AS Couee I Amrani AE Nicolas J Domain organization within repeated DNA sequences: Application to the study of a family of transposable elements Bioinformatics 2006, 22:1948-1954. 16809391
    • (2006) Bioinformatics , vol.22 , pp. 1948-1954
    • Tempel, S.1    Giraud, M.2    Lavenier, D.3    Lerman, I.C.4    Valin, A.S.5    Couee, I.6    Amrani, A.E.7    Nicolas, J.8
  • 28
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • 1145509
    • Watterson GA On the number of segregating sites in genetical models without recombination Theor Popul Biol 1975, 7:256-276. 1145509
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 29
    • 34249683917 scopus 로고    scopus 로고
    • Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes of Arabidopsis thaliana and Arabidopsis lyrata
    • 1865379 17451608
    • DeRose-Wilson LJ Gaut BS Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes of Arabidopsis thaliana and Arabidopsis lyrata BMC Evol Biol 2007, 7:66. 1865379 17451608
    • (2007) BMC Evol Biol , vol.7 , pp. 66
    • DeRose-Wilson, L.J.1    Gaut, B.S.2
  • 31
    • 37649005250 scopus 로고    scopus 로고
    • Long-term evolution of transposable elements
    • 2148297 18040048
    • Le Rouzic A Boutin TS Capy P Long-term evolution of transposable elements Proc Natl Acad Sci USA 2007, 104:19375-19380. 2148297 18040048
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19375-19380
    • Le Rouzic, A.1    Boutin, T.S.2    Capy, P.3
  • 33
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98
    • Hall TA BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98 Nucleic Acids Symp Ser 1999, 41:95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 34
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • 17488738
    • Tamura K Dudley J Nei M Kumar S MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 2007. 24:1596-1599. 17488738
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 35
    • 0001464973 scopus 로고
    • Estimation of evolutionary distances between homologous nucleotide sequences
    • 319072 6165991
    • Kimura M Estimation of evolutionary distances between homologous nucleotide sequences Proc Natl Acad Sci USA 1981, 78:454-458. 319072 6165991
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 454-458
    • Kimura, M.1
  • 37
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • 10547847
    • Rozen S Skaletsky H Primer3 on the WWW for general users and for biologist programmers Methods Mol Biol 2000, 132:365-386. 10547847
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 39
    • 55149109548 scopus 로고    scopus 로고
    • UNAFold: Software for nucleic acid folding and hybriziation
    • Totowa, NJ.: Humana Press Keith JM
    • Markham NRZM UNAFold: Software for nucleic acid folding and hybriziation Bioinformatics, Structure, Functions and Applications Totowa, NJ.: Humana Press Keith JM 2008, II.
    • (2008) Bioinformatics, Structure, Functions and Applications , vol.2
    • Markham, N.R.Z.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.