-
1
-
-
23944473342
-
Structural and functional diversity generated by alternative mRNA splicing
-
10.1016/j.tibs.2005.07.001 16023350
-
Stetefeld J Ruegg MA Structural and functional diversity generated by alternative mRNA splicing Trends Biochem Sci 2005, 30:515-521. 10.1016/ j.tibs.2005.07.001 16023350
-
(2005)
Trends Biochem Sci
, vol.30
, pp. 515-521
-
-
Stetefeld, J.1
Ruegg, M.A.2
-
2
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
10.1038/35057062 11237011
-
Lander ES Linton LM Birren B Nusbaum C Zody MC Baldwin J Devon K Dewar K Doyle M FitzHugh W Funke R Gage D Harris K Heaford A Howland J Kann L Lehoczky J LeVine R McEwan P McKernan K Meldrim J Mesirov JP Miranda C Morris W Naylor J Raymond C Rosetti M Santos R Sheridan A Sougnez C Stange-Thomann N Stojanovic N Subramanian A Wyman D Rogers J Sulston J Ainscough R Beck S Bentley D Burton J Clee C Carter N Coulson A Deadman R Deloukas P Dunham A Dunham I Durbin R French L Grafham D Gregory S Hubbard T Humphray S Hunt A Jones M Lloyd C McMurray A Matthews L Mercer S Milne S Mullikin JC Mungall A Plumb R Ross M Shownkeen R Sims S Waterston RH Wilson RK Hillier LW McPherson JD Marra MA Mardis ER Fulton LA Chinwalla AT Pepin KH Gish WR Chissoe SL Wendl MC Delehaunty KD Miner TL Delehaunty A Kramer JB Cook LL Fulton RS Johnson DL Minx PJ Clifton SW Hawkins T Branscomb E Predki P Richardson P Wenning S Slezak T Doggett N Cheng JF Olsen A Lucas S Elkin C Uberbacher E et al. International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome Nature 2001, 409:860-921. 10.1038/35057062 11237011
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
Funke, R.11
Gage, D.12
Harris, K.13
Heaford, A.14
Howland, J.15
Kann, L.16
Lehoczky, J.17
LeVine, R.18
McEwan, P.19
McKernan, K.20
Meldrim, J.21
Mesirov, J.P.22
Miranda, C.23
Morris, W.24
Naylor, J.25
Raymond, C.26
Rosetti, M.27
Santos, R.28
Sheridan, A.29
Sougnez, C.30
Stange-Thomann, N.31
Stojanovic, N.32
Subramanian, A.33
Wyman, D.34
Rogers, J.35
Sulston, J.36
Ainscough, R.37
Beck, S.38
Bentley, D.39
Burton, J.40
Clee, C.41
Carter, N.42
Coulson, A.43
Deadman, R.44
Deloukas, P.45
Dunham, A.46
Dunham, I.47
Durbin, R.48
French, L.49
Grafham, D.50
Gregory, S.51
Hubbard, T.52
Humphray, S.53
Hunt, A.54
Jones, M.55
Lloyd, C.56
McMurray, A.57
Matthews, L.58
Mercer, S.59
Milne, S.60
Mullikin, J.C.61
Mungall, A.62
Plumb, R.63
Ross, M.64
Shownkeen, R.65
Sims, S.66
Waterston, R.H.67
Wilson, R.K.68
Hillier, L.W.69
McPherson, J.D.70
Marra, M.A.71
Mardis, E.R.72
Fulton, L.A.73
Chinwalla, A.T.74
Pepin, K.H.75
Gish, W.R.76
Chissoe, S.L.77
Wendl, M.C.78
Delehaunty, K.D.79
Miner, T.L.80
Delehaunty, A.81
Kramer, J.B.82
Cook, L.L.83
Fulton, R.S.84
Johnson, D.L.85
Minx, P.J.86
Clifton, S.W.87
Hawkins, T.88
Branscomb, E.89
Predki, P.90
Richardson, P.91
Wenning, S.92
Slezak, T.93
Daoggett, N.94
Cheng, J.F.95
Olsen, A.96
Lucas, S.97
Elkin, C.98
Uberbacher, E.99
more..
-
3
-
-
0035895505
-
The sequence of the human genome
-
10.1126/science.1058040 11181995
-
Venter JC Adams MD Myers EW Li PW Mural RJ Sutton GG Smith HO Yandell M Evans CA Holt RA Gocayne JD Amanatides P Ballew RM Huson DH Wortman JR Zhang Q Kodira CD Zheng XH Chen L Skupski M Subramanian G Thomas PD Zhang J Gabor Miklos GL Nelson C Broder S Clark AG Nadeau J McKusick VA Zinder N Levine AJ Roberts RJ Simon M Slayman C Hunkapiller M Bolanos R Delcher A Dew I Fasulo D Flanigan M Florea L Halpern A Hannenhalli S Kravitz S Levy S Mobarry C Reinert K Remington K Abu-Threideh J Beasley E Biddick K Bonazzi V Brandon R Cargill M Chandramouliswaran I Charlab R Chaturvedi K Deng Z Di Francesco V Dunn P Eilbeck K Evangelista C Gabrielian AE Gan W Ge W Gong F Gu Z Guan P Heiman TJ Higgins ME Ji RR Ke Z Ketchum KA Lai Z Lei Y Li Z Li J Liang Y Lin X Lu F Merkulov GV Milshina N Moore HM Naik AK Narayan VA Neelam B Nusskern D Rusch DB Salzberg S Shao W Shue B Sun J Wang Z Wang A Wang X Wang J Wei M Wides R Xiao C et al. The sequence of the human genome Science 2001, 291:1304-51. 10.1126/science.1058040 11181995
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
Holt, R.A.10
Gocayne, J.D.11
Amanatides, P.12
Ballew, R.M.13
Huson, D.H.14
Wortman, J.R.15
Zhang, Q.16
Kodira, C.D.17
Zheng, X.H.18
Chen, L.19
Skupski, M.20
Subramanian, G.21
Thomas, P.D.22
Zhang, J.23
Gabor Miklos, G.L.24
Nelson, C.25
Broder, S.26
Clark, A.G.27
Nadeau, J.28
McKusick, V.A.29
Zinder, N.30
Levine, A.J.31
Roberts, R.J.32
Simon, M.33
Slayman, C.34
Hunkapiller, M.35
Bolanos, R.36
Delcher, A.37
Dew, I.38
Fasulo, D.39
Flanigan, M.40
Florea, L.41
Halpern, A.42
Hannenhalli, S.43
Kravitz, S.44
Levy, S.45
Mobarry, C.46
Reinert, K.47
Remington, K.48
Abu-Threideh, J.49
Beasley, E.50
Biddick, K.51
Bonazzi, V.52
Brandon, R.53
Cargill, M.54
Chandramouliswaran, I.55
Charlab, R.56
Chaturvedi, K.57
Deng, Z.58
Di Francesco, V.59
Dunn, P.60
Eilbeck, K.61
Evangelista, C.62
Gabrielian, A.E.63
Gan, W.64
Ge, W.65
Gong, F.66
Gu, Z.67
Guan, P.68
Heiman, T.J.69
Higgins, M.E.70
Ji, R.R.71
Ke, Z.72
Ketchum, K.A.73
Lai, Z.74
Lei, Y.75
Li, Z.76
Li, J.77
Liang, Y.78
Lin, X.79
Lu, F.80
Merkulov, G.V.81
Milshina, N.82
Moore, H.M.83
Naik, A.K.84
Narayan, V.A.85
Neelam, B.86
Nusskern, D.87
Rusch, D.B.88
Salzberg, S.89
Shao, W.90
Shue, B.91
Sun, J.92
Wang, Z.93
Wang, A.94
Wang, X.95
Wang, J.96
Wei, M.97
Wides, R.98
Xiao, C.99
more..
-
4
-
-
0033804469
-
Genomic sequence, splicing, and gene annotation
-
1287883 10986039 10.1086/303098
-
Mount SM Genomic sequence, splicing, and gene annotation Am J Hum Genet 2000, 67:788-792. 1287883 10986039 10.1086/303098
-
(2000)
Am J Hum Genet
, vol.67
, pp. 788-792
-
-
Mount, S.M.1
-
5
-
-
12344250822
-
Function of alternative splicing
-
10.1016/j.gene.2004.10.022 15656968
-
Stamm S Ben-Ari S Rafalska I Tang Y Zhang Z Toiber D Thanaraj TA Soreq H Function of alternative splicing Gene 2005, 344:1-20. 10.1016/ j.gene.2004.10.022 15656968
-
(2005)
Gene
, vol.344
, pp. 1-20
-
-
Stamm, S.1
Ben-Ari, S.2
Rafalska, I.3
Tang, Y.4
Zhang, Z.5
Toiber, D.6
Thanaraj, T.A.7
Soreq, H.8
-
6
-
-
33748470085
-
Alternative splicing in human transcriptome: Functional and structural influence on proteins
-
10.1016/j.gene.2006.05.015 16872759
-
Yura K Shionyu M Hagino K Hijikata A Hirashima Y Nakahara T Eguchi T Shinoda K Yamaguchi A Takahashi K Itoh T Imanishi T Gojobori T Go M Alternative splicing in human transcriptome: Functional and structural influence on proteins Gene 2006, 380:63-71. 10.1016/j.gene.2006.05.015 16872759
-
(2006)
Gene
, vol.380
, pp. 63-71
-
-
Yura, K.1
Shionyu, M.2
Hagino, K.3
Hijikata, A.4
Hirashima, Y.5
Nakahara, T.6
Eguchi, T.7
Shinoda, K.8
Yamaguchi, A.9
Takahashi, K.10
Itoh, T.11
Imanishi, T.12
Gojobori, T.13
Go, M.14
-
8
-
-
1242352406
-
Assessing the impact of alternative splicing on domain interactions in the human proteome
-
10.1021/pr034064v
-
Resch A Xing Y Modrek B Gorlick M Riley R Lee C Assessing the impact of alternative splicing on domain interactions in the human proteome Proteome Res 2004, 3:76-84. 10.1021/pr034064v
-
(2004)
Proteome Res
, vol.3
, pp. 76-84
-
-
Resch, A.1
Xing, Y.2
Modrek, B.3
Gorlick, M.4
Riley, R.5
Lee, C.6
-
9
-
-
34548281651
-
Comparative genomics and evolution of alternative splicing: The pessimists' science
-
10.1021/cr068304c 17645315
-
Artamonova II Gelfand MS Comparative genomics and evolution of alternative splicing: The pessimists' science Chem Rev 2007, 107:3407-3430. 10.1021/cr068304c 17645315
-
(2007)
Chem Rev
, vol.107
, pp. 3407-3430
-
-
Artamonova, I.I.1
Gelfand, M.S.2
-
10
-
-
0035036534
-
Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
-
311065 11337482 10.1101/gr.155001
-
Kan Z Rouchka EC Gish WR States DJ Gene structure prediction and alternative splicing analysis using genomically aligned ESTs Genome Res 2001, 11:889-900. 311065 11337482 10.1101/gr.155001
-
(2001)
Genome Res
, vol.11
, pp. 889-900
-
-
Kan, Z.1
Rouchka, E.C.2
Gish, W.R.3
States, D.J.4
-
11
-
-
0034256020
-
Alternative pre-mRNA splicing: The logic of combinatorial control
-
10.1016/S0968-0004(00)01604-2 10916158
-
Smith CW Valcárcel J Alternative pre-mRNA splicing: The logic of combinatorial control Trends Biochem Sci 2000, 25:381-388. 10.1016/ S0968-0004(00)01604-2 10916158
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 381-388
-
-
Smith, C.W.1
Valcárcel, J.2
-
12
-
-
0037109158
-
The role of caspases 9 and 9-short (9S) in death ligand- and drug-induced apoptosis in human astrocytoma cells
-
10.1016/S0169-328X(02)00408-4 12393263
-
Waltereit R Weller M The role of caspases 9 and 9-short (9S) in death ligand- and drug-induced apoptosis in human astrocytoma cells Brain Res Mol Brain Res 2002, 106:42-49. 10.1016/S0169-328X(02)00408-4 12393263
-
(2002)
Brain Res Mol Brain Res
, vol.106
, pp. 42-49
-
-
Waltereit, R.1
Weller, M.2
-
13
-
-
0038407759
-
Alternative splicing: A novel mechanism to fine-tune the expression and function of the human AT1 receptor
-
10.1016/S1043-2760(02)00038-3 12591176
-
Elton TS Martin MM Alternative splicing: A novel mechanism to fine-tune the expression and function of the human AT1 receptor Trends Endocrinol Metab 2003, 14:66-71. 10.1016/S1043-2760(02)00038-3 12591176
-
(2003)
Trends Endocrinol Metab
, vol.14
, pp. 66-71
-
-
Elton, T.S.1
Martin, M.M.2
-
14
-
-
17244377445
-
Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific
-
545595 15461794 10.1186/gb-2004-5-10-r75
-
Taneri B Snyder B Novoradovsky A Gaasterland T Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific Genome Biol 2004, 5:R75. 545595 15461794 10.1186/gb-2004-5-10-r75
-
(2004)
Genome Biol
, vol.5
-
-
Taneri, B.1
Snyder, B.2
Novoradovsky, A.3
Gaasterland, T.4
-
15
-
-
34248368920
-
The implications of alternative splicing in the ENCODE protein complement
-
1838448 17372197 10.1073/pnas.0700800104
-
Tress ML Martelli PL Frankish A Reeves GA Wesselink JJ Yeats C Olason PI Albrecht M Hegyi H Giorgetti A Raimondo D Lagarde J Laskowski RA López G Sadowski MI Watson JD Fariselli P Rossi I Nagy A Kai W Størling Z Orsini M Assenov Y Blankenburg H Huthmacher C Ramírez F Schlicker A Denoeud F Jones P Kerrien S Orchard S Antonarakis SE Reymond A Birney E Brunak S Casadio R Guigo R Harrow J Hermjakob H Jones DT Lengauer T Orengo CA Patthy L Thornton JM Tramontano A Valencia A The implications of alternative splicing in the ENCODE protein complement Proc Natl Acad Sci USA 2007, 104:5495-5500. 1838448 17372197 10.1073/pnas.0700800104
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 5495-5500
-
-
Tress, M.L.1
Martelli, P.L.2
Frankish, A.3
Reeves, G.A.4
Wesselink, J.J.5
Yeats, C.6
Olason, P.I.7
Albrecht, M.8
Hegyi, H.9
Giorgetti, A.10
Raimondo, D.11
Lagarde, J.12
Laskowski, R.A.13
López, G.14
Sadowski, M.I.15
Watson, J.D.16
Fariselli, P.17
Rossi, I.18
Nagy, A.19
Kai, W.20
Størling, Z.21
Orsini, M.22
Assenov, Y.23
Blankenburg, H.24
Huthmacher, C.25
Ramírez, F.26
Schlicker, A.27
Denoeud, F.28
Jones, P.29
Kerrien, S.30
Orchard, S.31
Antonarakis, S.E.32
Reymond, A.33
Birney, E.34
Brunak, S.35
Casadio, R.36
Guigo, R.37
Harrow, J.38
Hermjakob, H.39
Jones, D.T.40
Lengauer, T.41
Orengo, C.A.42
Patthy, L.43
Thornton, J.M.44
Tramontano, A.45
Valencia, A.46
more..
-
16
-
-
0026794668
-
The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: Causes and consequences
-
10.1007/BF00210743 1427786
-
Krawczak M Reiss J Cooper DN The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: Causes and consequences Hum Genet 1992, 90:41-54. 10.1007/BF00210743 1427786
-
(1992)
Hum Genet
, vol.90
, pp. 41-54
-
-
Krawczak, M.1
Reiss, J.2
Cooper, D.N.3
-
17
-
-
39049136572
-
Alternative approach to a heavy weight problem
-
2203619 18096750 10.1101/gr.6661308
-
Goren A Kim E Amit M Bochner R Lev-Maor G Ahituv N Ast G Alternative approach to a heavy weight problem Genome Res 2008, 18:214-220. 2203619 18096750 10.1101/gr.6661308
-
(2008)
Genome Res
, vol.18
, pp. 214-220
-
-
Goren, A.1
Kim, E.2
Amit, M.3
Bochner, R.4
Lev-Maor, G.5
Ahituv, N.6
Ast, G.7
-
18
-
-
0030772379
-
The regulation of splice-site selection, and its role in human disease
-
1715899 9311728 10.1086/514856
-
Cooper TA Mattox W The regulation of splice-site selection, and its role in human disease Am J Hum Genet 1997, 61:259-266. 1715899 9311728 10.1086/514856
-
(1997)
Am J Hum Genet
, vol.61
, pp. 259-266
-
-
Cooper, T.A.1
Mattox, W.2
-
19
-
-
0034161419
-
Exonic splicing enhancers: Mechanism of action, diversity and role in human genetic diseases
-
10.1016/S0968-0004(00)01549-8 10694877
-
Blencowe BJ Exonic splicing enhancers: Mechanism of action, diversity and role in human genetic diseases Trends Biochem Sci 2000, 25:106-110. 10.1016/S0968-0004(00)01549-8 10694877
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 106-110
-
-
Blencowe, B.J.1
-
20
-
-
19344367734
-
Single nucleotide polymorphism-based validation of exonic splicing enhancers
-
514884 15340491 10.1371/journal.pbio.0020268
-
Fairbrother WG Holste D Burge CB Sharp PA Single nucleotide polymorphism-based validation of exonic splicing enhancers PloS Biol 2004, 2:E268. 514884 15340491 10.1371/journal.pbio.0020268
-
(2004)
PloS Biol
, vol.2
-
-
Fairbrother, W.G.1
Holste, D.2
Burge, C.B.3
Sharp, P.A.4
-
21
-
-
33846467191
-
Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
-
1769375 17192196 10.1186/1471-2164-7-325
-
Gardina PJ Clark TA Shimada B Staples MK Yang Q Veitch J Schweitzer A Awad T Sugnet C Dee S Davies C Williams A Turpaz Y Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array BMC Genomics 2006, 7:325. 1769375 17192196 10.1186/ 1471-2164-7-325
-
(2006)
BMC Genomics
, vol.7
, pp. 325
-
-
Gardina, P.J.1
Clark, T.A.2
Shimada, B.3
Staples, M.K.4
Yang, Q.5
Veitch, J.6
Schweitzer, A.7
Awad, T.8
Sugnet, C.9
Dee, S.10
Davies, C.11
Williams, A.12
Turpaz, Y.13
-
22
-
-
0141974926
-
Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences
-
206480 14500827 10.1093/nar/gkg786
-
Xu Q Lee C Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences Nucleic Acids Res 2003, 31:5635-5643. 206480 14500827 10.1093/nar/gkg786
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5635-5643
-
-
Xu, Q.1
Lee, C.2
-
23
-
-
0030925920
-
Pfam: A comprehensive database of protein domain families based on seed alignments
-
10.1002/(SICI)1097-0134(199707)28:3<405::AID-PROT10>3.0.CO;2-L 9223186
-
Sonnhammer EL Eddy SR Durbin R Pfam: A comprehensive database of protein domain families based on seed alignments Proteins 1997, 28:405-420. 10.1002/(SICI)1097-0134(199707)28:3<405::AID-PROT10>3.0.CO;2-L 9223186
-
(1997)
Proteins
, vol.28
, pp. 405-420
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Durbin, R.3
-
24
-
-
0037248869
-
PRINTS and its automatic supplement, prePRINTS
-
165477 12520033 10.1093/nar/gkg030
-
Attwood TK Bradley P Flower DR Gaulton A Maudling N Mitchell AL Moulton G Nordle A Paine K Taylor P Uddin A Zygouri C PRINTS and its automatic supplement, prePRINTS Nucleic Acids Res 2003, 31:400-402. 165477 12520033 10.1093/nar/gkg030
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 400-402
-
-
Attwood, T.K.1
Bradley, P.2
Flower, D.R.3
Gaulton, A.4
Maudling, N.5
Mitchell, A.L.6
Moulton, G.7
Nordle, A.8
Paine, K.9
Taylor, P.10
Uddin, A.11
Zygouri, C.12
-
27
-
-
33644878582
-
ASD: A bioinformatics resource on alternative splicing
-
1347394 16381912 10.1093/nar/gkj031
-
Stamm S Riethoven JJ Le Texier V Gopalakrishnan C Kumanduri V Tang Y Barbosa-Morais NL Thanaraj TA ASD: A bioinformatics resource on alternative splicing Nucleic Acids Res 2006, 34:D46-D55. 1347394 16381912 10.1093/nar/gkj031
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Stamm, S.1
Riethoven, J.J.2
Le Texier, V.3
Gopalakrishnan, C.4
Kumanduri, V.5
Tang, Y.6
Barbosa-Morais, N.L.7
Thanaraj, T.A.8
-
28
-
-
33846041078
-
The Universal Protein Resource (UniProt)
-
The UniProt Consortium 1669721 17142230 10.1093/nar/gkl929
-
The UniProt Consortium The Universal Protein Resource (UniProt) Nucleic Acids Res 2007, 35:D193-D197. 1669721 17142230 10.1093/nar/gkl929
-
(2007)
Nucleic Acids Res
, vol.35
-
-
-
29
-
-
0021770224
-
Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs
-
318541 6694911 10.1093/nar/12.2.857
-
Kozak M Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs Nucleic Acids Res 1984, 12:857-872. 318541 6694911 10.1093/nar/12.2.857
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 857-872
-
-
Kozak, M.1
-
31
-
-
0031813130
-
Pfam: Multiple sequence alignments and HMM-profiles of protein domains
-
147209 9399864 10.1093/nar/26.1.320
-
Sonnhammer EL Eddy SR Birney E Bateman A Durbin R Pfam: Multiple sequence alignments and HMM-profiles of protein domains Nucleic Acids Res 1998, 26:320-322. 147209 9399864 10.1093/nar/26.1.320
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 320-322
-
-
Sonnhammer, E.L.1
Eddy, S.R.2
Birney, E.3
Bateman, A.4
Durbin, R.5
-
32
-
-
33644876020
-
Pfam: Clans, web tools and services
-
1347511 16381856 10.1093/nar/gkj149
-
Finn RD Mistry J Schuster-Böckler B Griffiths-Jones S Hollich V Lassmann T Moxon S Marshall M Khanna A Durbin R Eddy SR Sonnhammer EL Bateman A Pfam: Clans, web tools and services Nucleic Acids Res 2006, 34:D247-D251. 1347511 16381856 10.1093/nar/gkj149
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Böckler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
33
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
146917 9254694 10.1093/nar/25.17.3389
-
Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25:3389-3402. 146917 9254694 10.1093/ nar/25.17.3389
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
34
-
-
0037246807
-
E-MSD: The European Bioinformatics Institute Macromolecular Structure Database
-
165512 12520052 10.1093/nar/gkg065
-
Boutselakis H Dimitropoulos D Fillon J Golovin A Henrick K Hussain A Ionides J John M Keller PA Krissinel E McNeil P Naim A Newman R Oldfield T Pineda J Rachedi A Copeland J Sitnov A Sobhany S Suarez-Uruena A Swaminathan J Tagari M Tate J Tromm S Velankar S Vranken W E-MSD: The European Bioinformatics Institute Macromolecular Structure Database Nucleic Acids Res 2003, 31:458-462. 165512 12520052 10.1093/nar/gkg065
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 458-462
-
-
Boutselakis, H.1
Dimitropoulos, D.2
Fillon, J.3
Golovin, A.4
Henrick, K.5
Hussain, A.6
Ionides, J.7
John, M.8
Keller, P.A.9
Krissinel, E.10
McNeil, P.11
Naim, A.12
Newman, R.13
Oldfield, T.14
Pineda, J.15
Rachedi, A.16
Copeland, J.17
Sitnov, A.18
Sobhany, S.19
Suarez-Uruena, A.20
Swaminathan, J.21
Tagari, M.22
Tate, J.23
Tromm, S.24
Velankar, S.25
Vranken, W.26
more..
-
35
-
-
0003436550
-
Mendelian Inheritance in Man. A Catalog of Human Genes and Genetic Disorders
-
Baltimore: Johns Hopkins University Press 12
-
McKusick VA Mendelian Inheritance in Man. A Catalog of Human Genes and Genetic Disorders The online version is: Online Mendelian Inheritance in Man, OMIM (TM). McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University (Baltimore, MD) and National Center for Biotechnology Information, National Library of Medicine (Bethesda, MD) Baltimore: Johns Hopkins University Press 12 1998. http://www.ncbi.nlm.nih.gov/omim/
-
(1998)
The Online Version Is: Online Mendelian Inheritance in Man, OMIM (TM). McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University (Baltimore, MD) and National Center for Biotechnology Information, National Library of Medicine (Bethesda, MD)
-
-
McKusick, V.A.1
-
36
-
-
24644493193
-
Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing
-
1192826 16123126 10.1073/pnas.0506139102
-
Baek D Green P Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing Proc Natl Acad Sci USA 2005, 102:12813-12818. 1192826 16123126 10.1073/ pnas.0506139102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12813-12818
-
-
Baek, D.1
Green, P.2
-
37
-
-
0037422575
-
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
-
140922 12502788 10.1073/pnas.0136770100
-
Lewis BP Green RE Brenner SE Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans Proc Natl Acad Sci USA 2003, 100:189-192. 140922 12502788 10.1073/ pnas.0136770100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 189-192
-
-
Lewis, B.P.1
Green, R.E.2
Brenner, S.E.3
-
38
-
-
34347400412
-
A new advance in alternative splicing databases: From catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants
-
1904244 17547750 10.1186/1471-2105-8-180
-
de la Grange P Dutertre M Correa M Auboeuf D A new advance in alternative splicing databases: From catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants BMC Bioinformatics 2007, 8:180. 1904244 17547750 10.1186/ 1471-2105-8-180
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 180
-
-
de la Grange, P.1
Dutertre, M.2
Correa, M.3
Auboeuf, D.4
-
39
-
-
33748550313
-
Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs
-
1557807 16914452 10.1093/nar/gkl507
-
Takeda J Suzuki Y Nakao M Barrero RA Koyanagi KO Jin L Motono C Hata H Isogai T Nagai K Otsuki T Kuryshev V Shionyu M Yura K Go M Thierry-Mieg J Thierry-Mieg D Wiemann S Nomura N Sugano S Gojobori T Imanishi T Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56 419 completely sequenced and manually annotated full-length cDNAs Nucleic Acids Research 2006, 34:3917-3928. 1557807 16914452 10.1093/nar/gkl507
-
(2006)
Nucleic Acids Research
, vol.34
, pp. 3917-3928
-
-
Takeda, J.1
Suzuki, Y.2
Nakao, M.3
Barrero, R.A.4
Koyanagi, K.O.5
Jin, L.6
Motono, C.7
Hata, H.8
Isogai, T.9
Nagai, K.10
Otsuki, T.11
Kuryshev, V.12
Shionyu, M.13
Yura, K.14
Go, M.15
Thierry-Mieg, J.16
Thierry-Mieg, D.17
Wiemann, S.18
Nomura, N.19
Sugano, S.20
Gojobori, T.21
Imanishi, T.22
more..
-
40
-
-
54949125116
-
-
PRINTS
-
PRINTS http://www.bioinf.manchester.ac.uk/dbbrowser/PRINTS/ printscontents.html
-
-
-
-
41
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Gene Ontology Consortium 10.1038/75556 10802651
-
Gene Ontology Consortium Gene Ontology: Tool for the unification of biology Nature Genet 2000, 25:25-29. 10.1038/75556 10802651
-
(2000)
Nature Genet
, vol.25
, pp. 25-29
-
-
-
42
-
-
0345306602
-
Large scale study of protein domain distribution in the context of alternative splicing
-
169920 12907725 10.1093/nar/gkg668
-
Liu S Altman RB Large scale study of protein domain distribution in the context of alternative splicing Nucleic Acids Research 2003, 31:4828-4835. 169920 12907725 10.1093/nar/gkg668
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 4828-4835
-
-
Liu, S.1
Altman, R.B.2
-
43
-
-
0037109158
-
The role of caspases 9 and 9-short (9S) in death ligand- and drug-induced apoptosis in human astrocytoma cells
-
10.1016/S0169-328X(02)00408-4 12393263
-
Waltereit R Weller M The role of caspases 9 and 9-short (9S) in death ligand- and drug-induced apoptosis in human astrocytoma cells Brain Res Mol Brain Res 2002, 106:42-49. 10.1016/S0169-328X(02)00408-4 12393263
-
(2002)
Brain Res Mol Brain Res
, vol.106
, pp. 42-49
-
-
Waltereit, R.1
Weller, M.2
-
44
-
-
33748645500
-
GENCODE: Producing a reference annotation for ENCODE
-
S4
-
Harrow J Denoeud F Frankish A Reymond A Chen CK Chrast J Lagarde J Gilbert JG Storey R Swarbreck D Rossier C Ucla C Hubbard T Antonarakis SE Guigo R GENCODE: Producing a reference annotation for ENCODE Genome Biology 2006, 7(Suppl 1:S4):1-9.
-
(2006)
Genome Biology
, vol.7
, Issue.SUPPL. 1
, pp. 1-9
-
-
Harrow, J.1
Denoeud, F.2
Frankish, A.3
Reymond, A.4
Chen, C.K.5
Chrast, J.6
Lagarde, J.7
Gilbert, J.G.8
Storey, R.9
Swarbreck, D.10
Rossier, C.11
Ucla, C.12
Hubbard, T.13
Antonarakis, S.E.14
Guigo, R.15
-
45
-
-
34047232679
-
The (In)dependence of Alternative Splicing and Gene Duplication
-
1808492 17335345 10.1371/journal.pcbi.0030033
-
Talavera D Vogel C Orozco M Teichmann SA de la Cruz X The (In)dependence of Alternative Splicing and Gene Duplication PloS Comput Biol 2007, 3:e33. 1808492 17335345 10.1371/journal.pcbi.0030033
-
(2007)
PloS Comput Biol
, vol.3
-
-
Talavera, D.1
Vogel, C.2
Orozco, M.3
Teichmann, S.A.4
de la Cruz, X.5
-
46
-
-
0037414465
-
Exhaustive enumeration of protein domain families
-
10.1016/S0022-2836(03)00269-9 12706730
-
Heger A Holm L Exhaustive enumeration of protein domain families J Mol Biol 2003, 328:749-767. 10.1016/S0022-2836(03)00269-9 12706730
-
(2003)
J Mol Biol
, vol.328
, pp. 749-767
-
-
Heger, A.1
Holm, L.2
-
47
-
-
34248999419
-
Selective translational repression of truncated proteins from frameshift mutation-derived mRNAs in tumors
-
1854916 17456004 10.1371/journal.pbio.0050109
-
You KT Li LS Kim N-G Kang HJ Koh KH Chwae Y-J Kim KM Kim YK Park SM Jang SK Kim H Selective translational repression of truncated proteins from frameshift mutation-derived mRNAs in tumors PloS Biol 2007, 5:e109. 1854916 17456004 10.1371/journal.pbio.0050109
-
(2007)
PloS Biol
, vol.5
-
-
You, K.T.1
Li, L.S.2
Kim, N.-G.3
Kang, H.J.4
Koh, K.H.5
Chwae, Y.-J.6
Kim, K.M.7
Kim, Y.K.8
Park, S.M.9
Jang, S.K.10
Kim, H.11
-
48
-
-
2442436981
-
Nonsense-mediated mRNA decay: From vacuum cleaner to Swiss army Knife
-
395777 15059251 10.1186/gb-2004-5-4-218
-
Neu-Yilik G Gehring NH Hentze MW Kulozik AE Nonsense-mediated mRNA decay: From vacuum cleaner to Swiss army Knife Genome Biol 2004, 5:218. 395777 15059251 10.1186/gb-2004-5-4-218
-
(2004)
Genome Biol
, vol.5
, pp. 218
-
-
Neu-Yilik, G.1
Gehring, N.H.2
Hentze, M.W.3
Kulozik, A.E.4
-
49
-
-
37349089805
-
Insights into the connection between cancer and alternative splicing
-
10.1016/j.tig.2007.10.001 18054115
-
Kim E Goren A Ast G Insights into the connection between cancer and alternative splicing Trends Genet 2008, 24:7-10. 10.1016/ j.tig.2007.10.001 18054115
-
(2008)
Trends Genet
, vol.24
, pp. 7-10
-
-
Kim, E.1
Goren, A.2
Ast, G.3
-
50
-
-
33746855164
-
Defective splicing, disease, and therapy: Searching for master checkpoints in exon definition
-
1524908 16855287 10.1093/nar/gkl498
-
Buratti E Baralle M Baralle FE Defective splicing, disease, and therapy: searching for master checkpoints in exon definition Nucleic Acids Res 2006, 34:3494-3510. 1524908 16855287 10.1093/nar/gkl498
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3494-3510
-
-
Buratti, E.1
Baralle, M.2
Baralle, F.E.3
-
51
-
-
33846039019
-
Ensembl 2007
-
1761443 17148474 10.1093/nar/gkl996
-
Hubbard TJ Aken BL Beal K Ballester B Caccamo M Chen Y Clarke L Coates G Cunningham F Cutts T Down T Dyer SC Fitzgerald S Fernandez-Banet J Graf S Haider S Hammond M Herrero J Holland R Howe K Howe K Johnson N Kahari A Keefe D Kokocinski F Kulesha E Lawson D Longden I Melsopp C Megy K Meidl P Ouverdin B Parker A Prlic A Rice S Rios D Schuster M Sealy I Severin J Slater G Smedley D Spudich G Trevanion S Vilella A Vogel J White S Wood M Cox T Curwen V Durbin R Fernandez-Suarez XM Flicek P Kasprzyk A Proctor G Searle S Smith J Ureta-Vidal A Birney E Ensembl 2007 Nucleic Acids Res 2007, 35:D610-D617. 1761443 17148474 10.1093/nar/ gkl996
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Hubbard, T.J.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cunningham, F.9
Cutts, T.10
Down, T.11
Dyer, S.C.12
Fitzgerald, S.13
Fernandez-Banet, J.14
Graf, S.15
Haider, S.16
Hammond, M.17
Herrero, J.18
Holland, R.19
Howe, K.20
Howe, K.21
Johnson, N.22
Kahari, A.23
Keefe, D.24
Kokocinski, F.25
Kulesha, E.26
Lawson, D.27
Longden, I.28
Melsopp, C.29
Megy, K.30
Meidl, P.31
Ouverdin, B.32
Parker, A.33
Prlic, A.34
Rice, S.35
Rios, D.36
Schuster, M.37
Sealy, I.38
Severin, J.39
Slater, G.40
Smedley, D.41
Spudich, G.42
Trevanion, S.43
Vilella, A.44
Vogel, J.45
White, S.46
Wood, M.47
Cox, T.48
Curwen, V.49
Durbin, R.50
Fernandez-Suarez, X.M.51
Flicek, P.52
Kasprzyk, A.53
Proctor, G.54
Searle, S.55
Smith, J.56
Ureta-Vidal, A.57
Birney, E.58
more..
-
52
-
-
0037084825
-
Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human
-
10.1093/hmg/11.4.451 11854178
-
Clark F Thanaraj TA Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human Human Molecular Genetics 2002, 11:451-464. 10.1093/ hmg/11.4.451 11854178
-
(2002)
Human Molecular Genetics
, vol.11
, pp. 451-464
-
-
Clark, F.1
Thanaraj, T.A.2
-
53
-
-
33644877169
-
HOLLYWOOD: A comparative relational database of alternative splicing
-
1347411 16381932 10.1093/nar/gkj048
-
Holste D Huo G Tung V Burge CB HOLLYWOOD: A comparative relational database of alternative splicing Nucleic Acids Res 2006, 34:D56-D62. 1347411 16381932 10.1093/nar/gkj048
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Holste, D.1
Huo, G.2
Tung, V.3
Burge, C.B.4
-
54
-
-
33846036722
-
The ASAPII database: Analysis and comparative genomics of alternative splicing in 15 animal species
-
1669709 17108355 10.1093/nar/gkl884
-
Kim N Alekseyenko AV Roy M Lee C The ASAPII database: Analysis and comparative genomics of alternative splicing in 15 animal species Nucleic Acids Res 2007, 35:D93-D98. 1669709 17108355 10.1093/nar/gkl884
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kim, N.1
Alekseyenko, A.V.2
Roy, M.3
Lee, C.4
-
55
-
-
33846075227
-
H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational
-
1716722 17130147 10.1093/nar/gkl854
-
Takeda J Suzuki Y Nakao M Kuroda T Sugano S Gojobori T Imanishi T H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational Nucleic Acids Res 2007, 35:D104-D109. 1716722 17130147 10.1093/nar/gkl854
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Takeda, J.1
Suzuki, Y.2
Nakao, M.3
Kuroda, T.4
Sugano, S.5
Gojobori, T.6
Imanishi, T.7
-
56
-
-
33846039709
-
ECgene: An alternative splicing database update
-
1716719 17132829 10.1093/nar/gkl992
-
Lee Y Lee Y Kim B Shin Y Nam S Kim P Kim N Chung WH Kim J Lee S ECgene: an alternative splicing database update Nucleic Acids Res 2007, 35:D99-D103. 1716719 17132829 10.1093/nar/gkl992
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Lee, Y.1
Lee, Y.2
Kim, B.3
Shin, Y.4
Nam, S.5
Kim, P.6
Kim, N.7
Chung, W.H.8
Kim, J.9
Lee, S.10
-
57
-
-
34347400412
-
A new advance in alternative splicing databases: From catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants
-
1904244 17547750 10.1186/1471-2105-8-180
-
de la Grange P Dutertre M Correa M Auboeuf D A new advance in alternative splicing databases: From catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants BMC Bioinformatics 2007, 8:180. 1904244 17547750 10.1186/ 1471-2105-8-180
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 180
-
-
de la Grange, P.1
Dutertre, M.2
Correa, M.3
Auboeuf, D.4
-
58
-
-
34547599504
-
ASTALAVISTA: Dynamic and flexible analysis of alternative splicing events in custom gene datasets
-
1933205 17485470 10.1093/nar/gkm311
-
Foissac S Sammeth M ASTALAVISTA: Dynamic and flexible analysis of alternative splicing events in custom gene datasets Nucleic Acids Res 2007, 35:W297-W299. 1933205 17485470 10.1093/nar/gkm311
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Foissac, S.1
Sammeth, M.2
-
59
-
-
33645808501
-
AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation
-
1435940 16556303 10.1186/1471-2105-7-169
-
Le Texier V Riethoven JJ Kumanduri V Gopalakrishnan C Lopez F Gautheret D Thanaraj TA AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation BMC Bioinformatics 2006, 7:169. 1435940 16556303 10.1186/1471-2105-7-169
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 169
-
-
Le Texier, V.1
Riethoven, J.J.2
Kumanduri, V.3
Gopalakrishnan, C.4
Lopez, F.5
Gautheret, D.6
Thanaraj, T.A.7
-
60
-
-
43349089687
-
ASPicDB: A database resource for alternative splicing analysis
-
10.1093/bioinformatics/btn113 18388144
-
Castrignanò T D'Antonio M Anselmo A Carrabino D D'Onorio De Meo A D'Erchia AM Licciulli F Mangiulli M Mignone F Pavesi G Picardi E Riva A Rizzi R Bonizzoni P Pesole G ASPicDB: A database resource for alternative splicing analysis Bioinformatics 2008, 24:1300-1304. 10.1093/ bioinformatics/btn113 18388144
-
(2008)
Bioinformatics
, vol.24
, pp. 1300-1304
-
-
Castrignanò, T.1
D'Antonio, M.2
Anselmo, A.3
Carrabino, D.4
D'Onorio De Meo, A.5
D'Erchia, A.M.6
Licciulli, F.7
Mangiulli, M.8
Mignone, F.9
Pavesi, G.10
Picardi, E.11
Riva, A.12
Rizzi, R.13
Bonizzoni, P.14
Pesole, G.15
-
61
-
-
33846116032
-
New developments in the InterPro database
-
1899100 17202162 10.1093/nar/gkl841
-
Mulder NJ Apweiler R Attwood TK Bairoch A Bateman A Binns D Bork P Buillard V Cerutti L Copley R Courcelle E Das U Daugherty L Dibley M Finn R Fleischmann W Gough J Haft D Hulo N Hunter S Kahn D Kanapin A Kejariwal A Labarga A Langendijk-Genevaux PS Lonsdale D Lopez R Letunic I Madera M Maslen J McAnulla C McDowall J Mistry J Mitchell A Nikolskaya AN Orchard S Orengo C Petryszak R Selengut JD Sigrist CJ Thomas PD Valentin F Wilson D Wu CH Yeats C New developments in the InterPro database Nucleic Acids Res 2007, 35:D224-D228. 1899100 17202162 10.1093/ nar/gkl841
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bork, P.7
Buillard, V.8
Cerutti, L.9
Copley, R.10
Courcelle, E.11
Das, U.12
Daugherty, L.13
Dibley, M.14
Finn, R.15
Fleischmann, W.16
Gough, J.17
Haft, D.18
Hulo, N.19
Hunter, S.20
Kahn, D.21
Kanapin, A.22
Kejariwal, A.23
Labarga, A.24
Langendijk-Genevaux, P.S.25
Lonsdale, D.26
Lopez, R.27
Letunic, I.28
Madera, M.29
Maslen, J.30
McAnulla, C.31
McDowall, J.32
Mistry, J.33
Mitchell, A.34
Nikolskaya, A.N.35
Orchard, S.36
Orengo, C.37
Petryszak, R.38
Selengut, J.D.39
Sigrist, C.J.40
Thomas, P.D.41
Valentin, F.42
Wilson, D.43
Wu, C.H.44
Yeats, C.45
more..
-
62
-
-
16644365680
-
Exploring Alternative transcript structure in the human genome using Blocks and Interpro
-
10.1142/S0219720003000113 15290774
-
Loraine AE Helt GA Cline MS Siani-Rose MA Exploring Alternative transcript structure in the human genome using Blocks and Interpro J Bioinform Comput Biol 2003, 1:289-306. 10.1142/S0219720003000113 15290774
-
(2003)
J Bioinform Comput Biol
, vol.1
, pp. 289-306
-
-
Loraine, A.E.1
Helt, G.A.2
Cline, M.S.3
Siani-Rose, M.A.4
|