-
1
-
-
33746189409
-
Endonucleolytic function of MutLalpha in human mismatch repair
-
Kadyrov,F.A., Dzantiev,L., Constantin,N. and Modrich,P. (2006) Endonucleolytic function of MutLalpha in human mismatch repair. Cell 126, 297-308.
-
(2006)
Cell
, vol.126
, pp. 297-308
-
-
Kadyrov, F.A.1
Dzantiev, L.2
Constantin, N.3
Modrich, P.4
-
2
-
-
33750083332
-
Mechanisms in eukaryotic mismatch repair
-
Modrich,P. (2006) Mechanisms in eukaryotic mismatch repair. J. Biol. Chem., 281, 30305-30309.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 30305-30309
-
-
Modrich, P.1
-
3
-
-
1942512288
-
Role of APC and DNA mismatch repair genes in the development of colorectal cancers
-
Narayan,S. and Roy,D. (2003) Role of APC and DNA mismatch repair genes in the development of colorectal cancers. Mol. Cancer, 2, 41.
-
(2003)
Mol. Cancer
, vol.2
, pp. 41
-
-
Narayan, S.1
Roy, D.2
-
4
-
-
33751265848
-
DNA mismatch repair and Lynch syndrome
-
Plotz,G., Zeuzem,S. and Raedle,J. (2006) DNA mismatch repair and Lynch syndrome. J. Mol. Histol., 37, 271-283.
-
(2006)
J. Mol. Histol
, vol.37
, pp. 271-283
-
-
Plotz, G.1
Zeuzem, S.2
Raedle, J.3
-
5
-
-
33745612779
-
Genetics of colorectal cancer
-
Discussion 285-286, 288-289
-
Jeter,J.M., Kohlmann,W. and Gruber,S.B. (2006) Genetics of colorectal cancer. Oncology, 20, 269-276; Discussion 285-286, 288-289.
-
(2006)
Oncology
, vol.20
, pp. 269-276
-
-
Jeter, J.M.1
Kohlmann, W.2
Gruber, S.B.3
-
6
-
-
0024596295
-
Methyl-directed DNA mismatch correction
-
Modrich,P. (1989) Methyl-directed DNA mismatch correction. J. Biol. Chem., 264, 6597-6600.
-
(1989)
J. Biol. Chem
, vol.264
, pp. 6597-6600
-
-
Modrich, P.1
-
7
-
-
0025170997
-
Mechanisms of DNA-mismatch correction
-
Grilley,M., Holmes,J., Yashar,B. and Modrich,P. (1990) Mechanisms of DNA-mismatch correction. Mutat. Res., 236, 253-267.
-
(1990)
Mutat. Res
, vol.236
, pp. 253-267
-
-
Grilley, M.1
Holmes, J.2
Yashar, B.3
Modrich, P.4
-
8
-
-
0035903140
-
Redundant exonuclease involvement in Escherichia coli methyl-directed mismatch repair
-
Viswanathan,M., Burdett,V., Baitinger,C., Modrich,P. and Lovett,S.T. (2001) Redundant exonuclease involvement in Escherichia coli methyl-directed mismatch repair. J. Biol. Chem., 276, 31053-31058.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 31053-31058
-
-
Viswanathan, M.1
Burdett, V.2
Baitinger, C.3
Modrich, P.4
Lovett, S.T.5
-
9
-
-
0027276122
-
Methyl-directed mismatch repair is bidirectional
-
Cooper,D.L., Lahue,R.S. and Modrich,P. (1993) Methyl-directed mismatch repair is bidirectional. J. Biol. Chem., 268, 11823-11829.
-
(1993)
J. Biol. Chem
, vol.268
, pp. 11823-11829
-
-
Cooper, D.L.1
Lahue, R.S.2
Modrich, P.3
-
10
-
-
0029863561
-
Role of the recJ gene product in UV-induced illegitimate recombination at the hotspot
-
Ukita,T. and Ikeda,H. (1996) Role of the recJ gene product in UV-induced illegitimate recombination at the hotspot. J. Bacteriol. 178, 2362-2367.
-
(1996)
J. Bacteriol
, vol.178
, pp. 2362-2367
-
-
Ukita, T.1
Ikeda, H.2
-
11
-
-
0032567535
-
Identification of a potent DNase activity associated with RNase T of Escherichia coli
-
Viswanathan,M., Dower,K.W. and Lovett,S.T. (1998) Identification of a potent DNase activity associated with RNase T of Escherichia coli. J. Biol. Chem., 273, 35126-35131.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 35126-35131
-
-
Viswanathan, M.1
Dower, K.W.2
Lovett, S.T.3
-
12
-
-
0033057293
-
Identification of RNase T as a high-copy suppressor of the UV sensitivity associated with single-strand DNA exonuclease deficiency in Escherichia coli
-
Viswanathan,M., Lanjuin,A. and Lovett,S.T. (1999) Identification of RNase T as a high-copy suppressor of the UV sensitivity associated with single-strand DNA exonuclease deficiency in Escherichia coli. Genetics, 151, 929-934.
-
(1999)
Genetics
, vol.151
, pp. 929-934
-
-
Viswanathan, M.1
Lanjuin, A.2
Lovett, S.T.3
-
13
-
-
33750479057
-
sbcB15 And ΔsbcB mutations activate two types of recf recombination pathways in Escherichia coli
-
Zahradka,K., Simic,S., Buljubasic,M., Petranovic,M., Dermic,D. and Zahradka,D. (2006) sbcB15 And ΔsbcB mutations activate two types of recf recombination pathways in Escherichia coli. J. Bacteriol., 188, 7562-7571.
-
(2006)
J. Bacteriol
, vol.188
, pp. 7562-7571
-
-
Zahradka, K.1
Simic, S.2
Buljubasic, M.3
Petranovic, M.4
Dermic, D.5
Zahradka, D.6
-
14
-
-
33644862908
-
RecJ exonuclease: Substrates, products and interaction with SSB
-
Han,E.S., Cooper,D.L., Persky,N.S., Sutera,V.A., Whitaker,R.D., Montello,M.L. and Lovett,S.T. (2006) RecJ exonuclease: Substrates, products and interaction with SSB. Nucleic Acids Res., 34, 1084-1091.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1084-1091
-
-
Han, E.S.1
Cooper, D.L.2
Persky, N.S.3
Sutera, V.A.4
Whitaker, R.D.5
Montello, M.L.6
Lovett, S.T.7
-
15
-
-
0035811037
-
-
Burdett,V., Baitinger,C., Viswanathan,M., Lovett,S.T. and Modrich,P. (2001) In vivo requirement for RecJ, ExoVII, ExoI, and ExoX in methyl-directed mismatch repair. Proc. Natl Acad. Sci. USA, 98 6765-6770.
-
Burdett,V., Baitinger,C., Viswanathan,M., Lovett,S.T. and Modrich,P. (2001) In vivo requirement for RecJ, ExoVII, ExoI, and ExoX in methyl-directed mismatch repair. Proc. Natl Acad. Sci. USA, 98 6765-6770.
-
-
-
-
16
-
-
33645236040
-
Single-strand-specific exonucleases prevent frameshift mutagenesis by suppressing SOS induction and the action of DinB/DNA polymerase IV in growing cells
-
Hersh,M.N., Morales,L.D., Ross,K.J. and Rosenberg,S.M. (2006) Single-strand-specific exonucleases prevent frameshift mutagenesis by suppressing SOS induction and the action of DinB/DNA polymerase IV in growing cells. J. Bacteriol., 188, 2336-2342.
-
(2006)
J. Bacteriol
, vol.188
, pp. 2336-2342
-
-
Hersh, M.N.1
Morales, L.D.2
Ross, K.J.3
Rosenberg, S.M.4
-
17
-
-
0016258294
-
Exonuclease VII of Escherichia coli. Purification and properties
-
Chase,J.W. and Richardson,C.C. (1974) Exonuclease VII of Escherichia coli. Purification and properties. J. Biol. Chem., 249, 4545-4552.
-
(1974)
J. Biol. Chem
, vol.249
, pp. 4545-4552
-
-
Chase, J.W.1
Richardson, C.C.2
-
18
-
-
0016166828
-
Exonuclease VII of Escherichia coli. Mechanism of action
-
Chase,J.W. and Richardson,C.C. (1974) Exonuclease VII of Escherichia coli. Mechanism of action. J. Biol. Chem., 249, 4553-4561.
-
(1974)
J. Biol. Chem
, vol.249
, pp. 4553-4561
-
-
Chase, J.W.1
Richardson, C.C.2
-
19
-
-
0022979871
-
Escherichia coli exonuclease VII. Cloning and sequencing of the gene encoding the large subunit (xseA)
-
Chase,J.W., Rabin,B.A., Murphy,J.B., Stone,K.L. and Williams,K.R. (1986) Escherichia coli exonuclease VII. Cloning and sequencing of the gene encoding the large subunit (xseA). J. Biol. Chem., 261, 14929-14935.
-
(1986)
J. Biol. Chem
, vol.261
, pp. 14929-14935
-
-
Chase, J.W.1
Rabin, B.A.2
Murphy, J.B.3
Stone, K.L.4
Williams, K.R.5
-
20
-
-
0033609333
-
Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima
-
Nelson,K.E., Clayton,R.A., Gill,S.R., Gwinn,M.L., Dodson,R.J., Haft,D.H., Hickey,E.K., Peterson,J.D., Nelson,W.C., Ketchum,K.A. et al. (1999) Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature, 399, 323-329.
-
(1999)
Nature
, vol.399
, pp. 323-329
-
-
Nelson, K.E.1
Clayton, R.A.2
Gill, S.R.3
Gwinn, M.L.4
Dodson, R.J.5
Haft, D.H.6
Hickey, E.K.7
Peterson, J.D.8
Nelson, W.C.9
Ketchum, K.A.10
-
21
-
-
0035143506
-
Genome of Thermotoga maritima MSB8
-
Nelson,K.E., Eisen,J.A. and Fraser,C.M. (2001) Genome of Thermotoga maritima MSB8. Methods Enzymol., 330, 169-180.
-
(2001)
Methods Enzymol
, vol.330
, pp. 169-180
-
-
Nelson, K.E.1
Eisen, J.A.2
Fraser, C.M.3
-
22
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
Edgar,R.C. (2004) MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinform., 5, 113.
-
(2004)
BMC Bioinform
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
23
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar,R.C. (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res., 32, 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
24
-
-
0024234855
-
CLUSTAL: A package for performing multiple sequence alignment on a microcomputer
-
Higgins,D.G. and Sharp,P.M. (1988) CLUSTAL: A package for performing multiple sequence alignment on a microcomputer. Gene, 73, 237-244.
-
(1988)
Gene
, vol.73
, pp. 237-244
-
-
Higgins, D.G.1
Sharp, P.M.2
-
25
-
-
0029976603
-
Using CLUSTAL for multiple sequence alignments
-
Higgins,D.G., Thompson,J.D. and Gibson,T.J. (1996) Using CLUSTAL for multiple sequence alignments. Methods Enzymol., 266, 383-402.
-
(1996)
Methods Enzymol
, vol.266
, pp. 383-402
-
-
Higgins, D.G.1
Thompson, J.D.2
Gibson, T.J.3
-
26
-
-
0033990087
-
The use of CLUSTAL W and CLUSTAL X for multiple sequence alignment
-
Aiyar,A. (2000) The use of CLUSTAL W and CLUSTAL X for multiple sequence alignment. Methods Mol. Biol., 132, 221-241.
-
(2000)
Methods Mol. Biol
, vol.132
, pp. 221-241
-
-
Aiyar, A.1
-
27
-
-
0027764344
-
Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation
-
Livingstone,C.D. and Barton,G.J. (1993) Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation. Comput. Appl. Biosci., 9, 745-756.
-
(1993)
Comput. Appl. Biosci
, vol.9
, pp. 745-756
-
-
Livingstone, C.D.1
Barton, G.J.2
-
28
-
-
0034843597
-
AL2CO: Calculation of positional conservation in a protein sequence alignment
-
Pei,J. and Grishin,N.V. (2001) AL2CO: Calculation of positional conservation in a protein sequence alignment. Bioinformatics, 17, 700-712.
-
(2001)
Bioinformatics
, vol.17
, pp. 700-712
-
-
Pei, J.1
Grishin, N.V.2
-
29
-
-
0141705410
-
Using protein design for homology detection and active site searches
-
Pei,J., Dokholyan,N.V., Shakhnovich,E.I. and Grishin,N.V. (2003) Using protein design for homology detection and active site searches. Proc. Natl Acad. Sci. USA, 100, 11361-11366.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 11361-11366
-
-
Pei, J.1
Dokholyan, N.V.2
Shakhnovich, E.I.3
Grishin, N.V.4
-
30
-
-
0242515820
-
Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases
-
Pei,J. and Grishin,N.V. (2003) Peptidase family U34 belongs to the superfamily of N-terminal nucleophile hydrolases. Protein Sci., 12, 1131-1135.
-
(2003)
Protein Sci
, vol.12
, pp. 1131-1135
-
-
Pei, J.1
Grishin, N.V.2
-
31
-
-
33750001271
-
MUMMALS: Multiple sequence alignment improved by using hidden Markov models with local structural information
-
Pei,J. and Grishin,N.V. (2006) MUMMALS: Multiple sequence alignment improved by using hidden Markov models with local structural information. Nucleic Acids Res., 34, 4364-4374.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4364-4374
-
-
Pei, J.1
Grishin, N.V.2
-
32
-
-
0020479444
-
Subunit structure of Escherichia coli exonuclease VII
-
Vales,L.D., Rabin,B.A. and Chase,J.W. (1982) Subunit structure of Escherichia coli exonuclease VII. J. Biol. Chem., 257, 8799-8805.
-
(1982)
J. Biol. Chem
, vol.257
, pp. 8799-8805
-
-
Vales, L.D.1
Rabin, B.A.2
Chase, J.W.3
-
33
-
-
0037124038
-
Interaction of the Salmonella typhimurium transcription and virulence factor SlyA with target DNA and identification of members of the SlyA regulon
-
Stapleton,M.R., Norte,V.A., Read,R.C. and Green,J. (2002) Interaction of the Salmonella typhimurium transcription and virulence factor SlyA with target DNA and identification of members of the SlyA regulon. J. Biol. Chem., 277, 17630-17637.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 17630-17637
-
-
Stapleton, M.R.1
Norte, V.A.2
Read, R.C.3
Green, J.4
-
34
-
-
13444301391
-
Contact with host cells induces a DNA repair system in pathogenic Neisseriae
-
Morelle,S., Carbonnelle,E., Matic,I. and Nassif,X. (2005) Contact with host cells induces a DNA repair system in pathogenic Neisseriae. Mol. Microbiol., 55, 853-861.
-
(2005)
Mol. Microbiol
, vol.55
, pp. 853-861
-
-
Morelle, S.1
Carbonnelle, E.2
Matic, I.3
Nassif, X.4
-
35
-
-
0012767432
-
Nucleic acid recognition by OB-fold proteins
-
Theobald,D.L., Mitton-Fry,R.M. and Wuttke,D.S. (2003) Nucleic acid recognition by OB-fold proteins. Annu. Rev. Biophys. Biomol. Struct. 32, 115-133.
-
(2003)
Annu. Rev. Biophys. Biomol. Struct
, vol.32
, pp. 115-133
-
-
Theobald, D.L.1
Mitton-Fry, R.M.2
Wuttke, D.S.3
-
36
-
-
20744437001
-
RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins
-
Yang,Z.R., Thomson,R., McNeil,P. and Esnouf,R.M. (2005) RONN: The bio-basis function neural network technique applied to the detection of natively disordered regions in proteins. Bioinformatics, 21, 3369-3376.
-
(2005)
Bioinformatics
, vol.21
, pp. 3369-3376
-
-
Yang, Z.R.1
Thomson, R.2
McNeil, P.3
Esnouf, R.M.4
-
37
-
-
0037115920
-
Structure and function of nucleases in DNA repair: Shape, grip and blade of the DNA scissors
-
Nishino,T. and Morikawa,K. (2002) Structure and function of nucleases in DNA repair: Shape, grip and blade of the DNA scissors. Oncogene, 21, 9022-9032.
-
(2002)
Oncogene
, vol.21
, pp. 9022-9032
-
-
Nishino, T.1
Morikawa, K.2
-
38
-
-
0017595260
-
Escherichia coli mutants deficient in exonuclease VII
-
Chase,J.W. and Richardson,C.C. (1977) Escherichia coli mutants deficient in exonuclease VII. J. Bacteriol., 129, 934-947.
-
(1977)
J. Bacteriol
, vol.129
, pp. 934-947
-
-
Chase, J.W.1
Richardson, C.C.2
-
39
-
-
0020511898
-
Isolation and preliminary characterization of Escherichia coli mutants deficient in exonuclease VII
-
Vales,L.D., Rabin,B.A. and Chase,J.W. (1983) Isolation and preliminary characterization of Escherichia coli mutants deficient in exonuclease VII. J. Bacteriol., 155, 1116-1122.
-
(1983)
J. Bacteriol
, vol.155
, pp. 1116-1122
-
-
Vales, L.D.1
Rabin, B.A.2
Chase, J.W.3
-
40
-
-
33846033400
-
CDD: A conserved domain database for interactive domain family analysis
-
Marchler-Bauer,A., Anderson,J.B., Derbyshire,M.K., DeWeese-Scott,C., Gonzales,N.R., Gwadz,M., Hao,L., He,S., Hurwitz,D.I., Jackson,J.D. et al. (2007) CDD: A conserved domain database for interactive domain family analysis. Nucleic Acids Res., 35, D237-D240.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Derbyshire, M.K.3
DeWeese-Scott, C.4
Gonzales, N.R.5
Gwadz, M.6
Hao, L.7
He, S.8
Hurwitz, D.I.9
Jackson, J.D.10
-
41
-
-
0030977227
-
The RecB protein of Escherichia coli translocates along single-stranded DNA in the 3′ to 5′ direction: A proposed ratchet mechanism
-
Phillips,R.J., Hickleton,D.C., Boehmer,P.E. and Emmerson,P.T. (1997) The RecB protein of Escherichia coli translocates along single-stranded DNA in the 3′ to 5′ direction: A proposed ratchet mechanism. Mol. Gen. Genet., 254, 319-329.
-
(1997)
Mol. Gen. Genet
, vol.254
, pp. 319-329
-
-
Phillips, R.J.1
Hickleton, D.C.2
Boehmer, P.E.3
Emmerson, P.T.4
-
42
-
-
0034628577
-
Enzyme evolution. Design by necessity
-
Petsko,G.A. (2000) Enzyme evolution. Design by necessity. Nature, 403, 606-607.
-
(2000)
Nature
, vol.403
, pp. 606-607
-
-
Petsko, G.A.1
-
43
-
-
0033570183
-
Exonuclease X of Escherichia coli. A novel 3′-5′ DNase and Dnaq superfamily member involved in DNA repair
-
Viswanathan,M. and Lovett,S.T. (1999) Exonuclease X of Escherichia coli. A novel 3′-5′ DNase and Dnaq superfamily member involved in DNA repair. J. Biol. Chem., 274, 30094-30100.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 30094-30100
-
-
Viswanathan, M.1
Lovett, S.T.2
-
44
-
-
0017840194
-
Processivity of DNA exonucleases
-
Thomas,K.R. and Olivera,B.M. (1978) Processivity of DNA exonucleases. J. Biol. Chem., 253, 424-429.
-
(1978)
J. Biol. Chem
, vol.253
, pp. 424-429
-
-
Thomas, K.R.1
Olivera, B.M.2
|