Expression of tombusvirus open reading frames 1 and 2 is sufficient for the replication of defective interfering, but not satellite, RNA

Journal of General Virology

Volumn 85, Issue 10, 2004, Pages 3115-3122

  Rubino, Luisa ^a   Pantaleo, Vitantonio ^a   Navarro, Beatriz ^a   Russo, Marcello ^a  

^a UNIVERSITY OF BARI   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC RNA; SATELLITE RNA; VIRUS PROTEIN; VIRUS RNA; RNA DIRECTED RNA POLYMERASE;

ARTICLE; CONTROLLED STUDY; DEFECTIVE VIRUS; DELETION MUTANT; ENHANCER REGION; GENETIC CODE; NONHUMAN; OPEN READING FRAME; PLANT CELL; PRIORITY JOURNAL; PROTEIN EXPRESSION; TOMBUSVIRUS; TRANSGENIC PLANT; VIRUS GENOME; VIRUS REPLICATION; YEAST CELL; BIOSYNTHESIS; GENETICS; PHYSIOLOGY; RNA INTERFERENCE; YEAST;

CARNATION ITALIAN RINGSPOT VIRUS; CYMBIDIUM; CYMBIDIUM RINGSPOT VIRUS; DIANTHUS CARYOPHYLLUS; NICOTIANA; NICOTIANA BENTHAMIANA; TOMBUSVIRUS;

DEFECTIVE VIRUSES; OPEN READING FRAMES; RNA INTERFERENCE; RNA REPLICASE; RNA, SATELLITE; TOMBUSVIRUS; VIRUS REPLICATION; YEASTS;

EID: 5444252192     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80296-0     Document Type: Article

References (50)

1. Albariño, C. G., Price, B. D., Eckerle, L. D. & Ball, L. A. (2001). Characterization and template properties of RNA dimers generated during Flock house virus RNA replication. Virology 289 269-282.
2. Berben, G., Dumont, J., Gilliquet, V., Bolle, P. A. & Hilger, F. (1991). The YDp plasmids: a uniform set of vectors bearing versatile gene disruption cassettes for Saccharomyces cerevisiae. Yeast 7, 475-477.
3. Burgyan, J. & Russo, M. (1988). Studies on the replication of a satellite RNA associated with cymbidium ringspot virus. J Gen Virol 69, 3089-3092.
4. Burgyan, J., Rubino, L. & Russo, M. (1991). De novo generation of cymbidium ringspot virus defective interfering RNA. J Gen Virol 72, 505-509.
5. Burgyan, P., Dalmay, T., Rubino, L. & Russo, M. (1992). The replication of cymbidium ringspot tombusvirus defective interfering-satellite RNA hybrid molecules. Virology 190, 579-586.
6. Burgyan, J., Rubino, L. & Russo, M. (1996). The 5′-terminal region of a tombusvirus genome determines the origin of multivesicular bodies. J Gen Virol 77, 1967-1974.
7. Carrington, J. C., Freed, D. D. & Oh, C. S. (1990). Expression of potyviral polyproteins in transgenic plants reveals three proteolytic activities required for complete processing. EMBO J 9, 1347-1353.
8. Celix, A., Rodriguez-Cerezo, E. & Garcia-Arenal, F. (1997). New satellite RNAs, but no DI RNAs, are found in natural populations of tomato bushy stunt tombusvirus. Virology 239, 277-284.
9. Celix, A., Burgyan, J. & Rodriguez-Cerezo, E. (1999). Interactions between tombusviruses and satellite RNAs of tomato bushy stunt virus: a defect in sat RNA B1 replication maps to ORF1 of a helper virus. Virology 262, 129-138.
10. Chang, Y. C., Borja, M., Scholthof, H. B., Jackson, A. O. & Morris, T. J. (1995). Host effects and sequences essential for accumulation of defective interfering RNAs of cucumber necrosis and tomato bushy stunt tombusviruses. Virology 210, 41-53.
11. Chen, J., Noueiry, A. & Ahlquist, P. (2001). Brome mosaic virus protein 1a recruits viral RNA2 to RNA replication through a 5′ proximal RNA2 signal. J Virol 75, 3207-3219.
12. Dalmay, T. & Rubino, L. (1994). The nature of multimeric forms of cymbidium ringspot tombusvirus satellite RNA. Arch Virol 138, 161-167.
13. Dalmay, T. & Rubino, L. (1995). Replication of cymbidium ringspot virus satellite RNA mutants. Virology 206, 1092-1098.
14. Dalmay, T., Rubino, L., Burgyan, J., Kollar, A. & Russo, M. (1993a). Functional analysis of cymbidium ringspot virus genome. Virology 194, 697-704.
15. Dalmay, T., Russo, M. & Burgyan, J. (1993b). Repair in vivo of altered 3′ terminus of cymbidium ringspot tombusvirus RNA. Virology 192, 551-555.
16. Dalmay, T., Szittya, G. & Burgyan, J. (1995). Generation of defective interfering RNA dimers of cymbidium ringspot tombusvirus. Virology 207, 510-517.
17. Eckerle, L. D. & Ball, L. A. (2002). Replication of the RNA segments of a bipartite viral genome is coordinated by a transactivating subgenomic RNA. Virology 296, 165-176.
18. Eckerle, L. D., Albarino, C. G. & Ball, L. A. (2003). Flock house virus subgenomic RNA3 is replicated and its replication correlates with transactivation of RNA2. Virology 317, 95-108.
19. Fabian, M. R., Na, H., Ray, D. & White, K. A. (2003). 3′-Terminal RNA secondary structures are important for accumulation of tomato bushy stunt virus DI RNAs. Virology 313, 567-580.
20. Finnen, R. L. & Rochon, D. M. (1995). Characterization and biological activity of DI RNA dimers formed during cucumber necrosis virus coinfections. Virology 207, 282-286.
21. Havelda, Z. & Burgyan, J. (1995). 3′ Terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA. Virology 214, 269-272.
22. Havelda, Z., Dalmay, T. & Burgyan, J. (1995). Localization of cis-acting sequences essential for cymbidium ringspot tombusvirus defective interfering RNA replication. J Gen Virol 76, 2311-2316.
23. Havelda, Z., Szittya, G. & Burgyan, J. (1998). Characterization of the molecular mechanism of defective interfering RNA-mediated symptom attenuation in tombusvirus-infected plants. J Virol 72, 6251-6256.
24. Ishikawa, M., Janda, M., Krol, M. A. & Ahlquist, P. (1997). In vivo DNA expression of functional brome mosaic virus RNA replicons in Saccharomyces cerevisiae. J Virol 71, 7781-7790.
25. Kollar, A. & Burgyan, J. (1994). Evidence that ORF 1 and 2 are the only virus-encoded replicase genes of cymbidium ringspot tombusvirus. Virology 201, 169-172.
26. Lupo, R., Rubino, L. & Russo, M. (1994). Immunodetection of the 33K/92K polymerase proteins in cymbidium ringspot-infected and in transgenic plant tissue extracts. Arch Virol 138, 135-142.
27. Nagy, P. D. & Pogany, J. (2000). Partial purification and characterization of Cucumber necrosis virus and Tomato bushy stunt virus RNA-dependent RNA polymerases: similarities and differences in template usage between tombusvirus and carmovirus RNA-dependent RNA polymerases. Virology 276, 279-288.
28. Oh, C. S. & Carrington, J. C. (1989). Identification of essential residues in potyvirus proteinase HC-Pro by site-directed mutagenesis. Virology 173, 692-699.
29. Panavas, T. & Nagy, P. D. (2003). Yeast as a model host to study replication and recombination of defective interfering RNA of Tomato bushy stunt virus. Virology 314, 315-325.
30. Panavas, T., Pogany, J. & Nagy, P. D. (2002a). Analysis of minimal promoter sequences for plus-strand synthesis by the Cucumber necrosis virus RNA-dependent RNA polymerase. Virology 296, 263-274.
31. Panavas, T., Pogany, J. & Nagy, P. D. (2002b). Internal initiation by the Cucumber necrosis virus RNA-dependent RNA polymerase is facilitated by promoter-like sequences. Virology 296, 275-287.
32. Pantaleo, V., Rubino, L. & Russo, M. (2003). Replication of Carnation Italian ringspot virus defective interfering RNA in Saccharomyces cerevisiae. J Virol 77 2116-2123.
33. Pantaleo, V., Rubino, L. & Russo, M. (2004). The p36 and p95 replicase proteins of Carnation Italian ringspot virus cooperate in stabilizing defective interfering RNA. J Gen Virol 85, 2429-2433.
34. Ray, D. & White, K. A. (1999). Enhancer-like properties of an RNA element that modulates Tombusvirus RNA accumulation. Virology 256, 162-171.
35. Ray, D. & White, K. A. (2003). An internally located RNA hairpin enhances replication of tomato bushy stunt virus RNAs. J Virol 77, 245-257.
36. Rubino, L. & Russo, M. (1995). Characterization of resistance to cymbidium ringspot virus in transgenic plants expressing a full-length viral replicase gene. Virology 212, 240-243.
37. Rubino, L., Burgyan, J., Grieco, F. & Russo, M. (1990). Sequence analysis of cymbidium ringspot virus satellite and defective interfering RNAs. J Gen Virol 71, 1655-1660.
38. Rubino, L., Carrington, J. C. & Russo, M. (1992). Biologically active cymbidium ringspot virus satellite RNA in transgenic plants suppresses accumulation of DI RNAs. Virology 188, 429-437.
39. Rubino, L., Lupo, R. & Russo, M. (1993). Resistance to cymbidium ringspot tombusvirus infection in transgenic Nicotiana benthamiana plants expressing a full-length viral replicase gene. Mol Plant Microbe Interact 6, 729-734.
40. Rubino, L., Burgyan, J. & Russo, M. (1995). Molecular cloning and complete nucleotide sequence of carnation Italian ringspot tombusvirus genomic and defective interfering RNAs. Arch Virol 140, 2027-2039.
41. Rubino, L., Di Franco, A. & Russo, M. (2000). Expression of a plant virus non-structural protein in Saccharomyces cerevisiae causes membrane proliferation and altered mitochondrial morphology. J Gen Virol 81, 279-286.
42. Rubino, L., Weber-Lotfi, F., Dietrich, A., Stussi-Garaud, C. & Russo, M. (2001). The open reading frame 1-encoded ('36K') protein of Carnation Italian ringspot virus localizes to mitochondria. J Gen Virol 82, 29-34.
43. Russo, M., Burgyan, J. & Martelli, G. P. (1994). Molecular biology of Tombusviridae. Adv Virus Res 44, 381-428.
44. Silhavy, D., Molnar, A., Lucioli, A., Szittya, G., Hornyik, C., Tavazza, M. & Burgyan, J. (2002). A viral protein suppresses RNA silencing and binds silencing-generated, 21- to 25-nucleotide double-stranded RNAs. EMBO J 21, 3070-3080.
45. Sit, T. L., Vaewhongs, A. A. & Lommel, S. A. (1998). RNA-mediated transactivation of transcription from a viral RNA. Science 281, 829-832.
46. Töpfer, R., Matzeit, V., Gronenborn, B., Schell, J. & Steinbiss, H. H. (1987). A set of plant expression vectors for transcriptional and translational fusions. Nucleic Acids Res 15 5890.
47. White, K. A. & Morris, T. J. (1994). Recombination between defective tombusvirus RNAs generates functional hybrid genomes. Proc Natl Acad Sci U S A 91, 3642-3646.
48. Wu, B. & White, K. A. (1998). Formation and amplification of a novel tombusvirus defective RNA which lacks the 5′ nontranslated region of the viral genome. J Virol 72, 9897-9905.
49. Wu, B., Vanti, W. B. & White, K. A. (2001). An RNA domain within the 5′ untranslated region of the tomato bushy stunt virus genome modulates viral RNA replication. J Mol Biol 305, 741-756.
50. Zhang, G., Slowinski, V. & White, K. A. (1999). Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus. RNA 5, 550-561.