Replication of Carnation Italian ringspot virus defective interfering RNA in Saccharomyces cerevisiae

Journal of Virology

Volumn 77, Issue 3, 2003, Pages 2116-2123

  Pantaleo, Vitantonio ^a   Rubino, Luisa ^a   Russo, Marcello ^a,b  

^a UNIVERSITY OF BARI   (Italy)

^b Dipartimento di Protezione Delle Piante e Microbiologia Applicata   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; DIMER; MONOMER; RNA DIRECTED RNA POLYMERASE;

ARTICLE; CARNATION ITALIAN RINGSPOT VIRUS; ENZYME ACTIVITY; GENE AMPLIFICATION; GENETIC TRANSCRIPTION; NONHUMAN; PLASMID; PRIORITY JOURNAL; PROMOTER REGION; RNA REPLICATION; RNA TRANSCRIPTION; RNA TRANSLATION; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; TOBACCO RINGSPOT VIRUS; TOMBUSVIRUS; TRANSCRIPTION TERMINATION; VIRUS REPLICATION;

DEFECTIVE VIRUSES; DIANTHUS; DIMERIZATION; PROMOTER REGIONS (GENETICS); REPLICON; RNA INTERFERENCE; RNA, VIRAL; SACCHAROMYCES CEREVISIAE; TOMBUSVIRUS; TRANSCRIPTION, GENETIC; URIDINE TRIPHOSPHATE; VIRUS REPLICATION;

EID: 0037303222     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.77.3.2116-2123.2003     Document Type: Article

References (49)

1. Ammerer, G. 1983. Expression of genes in yeast using ADC1 promoter. Methods Enzymol. 101:192-201.
2. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1987. Current protocols in molecular biology. John Wiley & Sons, New York, N.Y.
3. Baker, K. P., A. Schaniel, D. Vestweber, and G. Schatz. 1990. A yeast mitochondrial outer membrane protein essential for protein import and cell viability. Nature 348:605-609.
4. Been, M. D. 1994. cis- and trans-acting ribozymes from a human pathogen, hepatitis delta virus. Trends Biochem. Sci. 19:251-256.
5. Berben, G., J. Dumont, V. Gilliquet, P. A. Bolle, and F. Hilger. 1991. The YDp plasmids: a uniform set of vectors bearing versatile gene disruption cassettes for Saccharomyces cerevisiae. Yeast 7:475-477.
6. Botstein, D., S. C. Falco, S. E. Stewart, M. Brennan, S. Scherer, D. T. Stinchcomb, K. Struhl, and R. W. Davis. 1979. Sterile host yeasts (SHY): a eukaryotic system of biological containment for recombinant DNA experiments. Gene 8:17-23.
7. Botstein, D., and G. R. Fink. 1988. Yeast: an experimental organism for modern biology. Science 240:1439-1443.
8. Burgyan, J., L. Rubino, and M. Russo. 1996. The 5′-terminal region of a tombusvirus genome determines the origin of multivesicular bodies. J. Gen. Virol. 77:1967-1974.
9. Carrington, J. C., D. D. Freed, and C. S. Oh. 1990. Expression of polyviral polyproteins in transgenic plants reveals three proteolytic activities required for complete processing. EMBO J. 9:1347-1353.
10. Cho, J. H., S. J. Ha, L. R. Kao, T. L. Megraw, and C. B. Chae. 1998. A novel DNA-binding protein bound to the mitochondrial inner membrane restores the null mutation of mitochondrial histone Abf2p in Saccharomyces cerevisiae. Mol. Cell. Biol. 18:5712-5723.
11. Dalmay, T., M. Russo, and J. Burgyan. 1993. Repair in vivo of altered 3′ terminus of cymbidium ringspot tombusvirus RNA. Virology 192:551-555.
12. Dalmay, T., G. Szittya, and J. Burgyan. 1995. Generation of defective interfering RNA dimers of cymbidium ringspot tombusvirus. Virology 207:510-517.
13. Diaz-Ruiz, J. R., and J. M. Kaper. 1978. Isolation of viral double-stranded RNAs using a LiCl fractionation procedure. Prep. Biochem. 8:1-7.
14. Di Franco, A., M. Russo, and G. P. Martelli. 1984. Ultrastructure and origin of cytoplasmic multivesicular bodies induced by carnation Italian ringspot virus. J. Gen. Virol. 65:1233-1237.
15. Dunoyer, P., C. Ritzenthaler, O. Hemmer, P. Michler, and C. Fritsch. 2002. Intracellular localization of the Peanut clump virus replication complex in tobacco BY-2 protoplasts containing green fluorescent protein-labeled endoplasmic reticulum or Golgi apparatus. J. Virol. 76:865-874.
16. Elion, E. A., and J. R. Warner. 1986. An RNA polymerase I enhancer in Saccharomyces cerevisiae. Mol. Cell. Biol. 6:2089-2097.
17. Finnen, R. L., and D. M. Rochon. 1995. Characterization and biological activity of DI RNA dimers formed during cucumber necrosis virus coinfections. Virology 207:282-286.
18. Gaire, F., C. Schmitt, C. Stussi-Garaud, L. Pinck, and C. Ritzenthaler. 1999. Protein 2A of grapevine fanleaf nepovirus is implicated in RNA2 replication and colocalizes to the replication site. Virology 264:25-36.
19. Gietz, R. D., and A. Sugino. 1988. New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74:527-534.
20. Havelda, Z., and J. Burgyan. 1995. 3′ terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA. Virology 214:269-272.
21. Hirzman, J., D. Luo, J. Halmen, and G. Hoborn. 1993. Determination of messenger RNA 5′-ends by reverse transcription of the cap structure. Nucleic Acids Res. 21:3597-3598.
22. Ishikawa, M., M. Janda, M. A. Krol, and P. Ahlquist. 1997. In Vivo DNA expression of functional brome mosaic virus RNA replicons in Saccharomyces cerevisiae. J. Virol. 71:7781-7790.
23. Ito, H., Y. Fulkuda, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153:163-168.
24. Janda, M., and P. Ahlquist. 1993. RNA-dependent replication, transcription, and persistence of brome mosaic virus RNA replicons in S. cerevisiae. Cell 72:961-970.
25. Jones, R. W., A. O. Jackson, and T. J. Morris. 1990. Defective-interfering RNAs and elevated temperatures inhibit replication of tomato bushy stunt virus in inoculated protoplasts. Virology 176:539-545.
26. Kollar, A., and J. Burgyan. 1994. Evidence that ORF 1 and 2 are the only virus encoded replicase gene of cymbidium ringspot tombusvirus. Virology 201:169-172.
27. Koonin, E. V. 1991. The phylogeny of RNA-dependent RNA polymerases of positive-strand viruses. J. Gen. Virol. 72:2197-2206.
28. Leeds, P., S. W. Peltz, A. Jacobson, and M. R. Culbertson. 1991. The product of the yeast UPF1 gene is required for rapid turnover of mRNAs containing a premature translation termination codon. Genes Dev. 5:2303-2314.
29. Martelli, G. P., D. Gallitelli, and M. Russo. 1988. Tombusviruses, p. 13-72. In R. Koenig (ed.), The plant viruses. Polyhedral virions with monopartite RNA genomes. Plenum Publishing Corporation, New York, N.Y.
30. Molinari, P., C. Marusic, A. Lucioli, R. Tavazza, and M. Tavazza. 1998. Identification of artichoke mottled crinkle virus (AMCV) proteins required for virus replication: complementation of AMCV p33 and p92 replication-defective mutants. J. Gen. Virol. 79:639-647.
31. Novak, J. E., and K. Kirkegaard. 1991. Improved method for detecting poliovirus negative strands used to demonstrate specificity of positive-strand encapsidation and the ratio of positive to negative strands in infected cells. J. Virol. 65:3384-3387.
32. Oster, S. K., B. Wu, and K. A. White. 1998. Uncoupled expression of p33 and p92 permits amplification of tomato bushy stunt virus RNAs. J. Virol. 72: 5845-5851.
33. Price, B. D., R. Rueckert, and P. Ahlquist. 1996. Complete replication of an animal virus and maintenance of expression vectors derived from it in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 93:9465-9470.
34. Redding, K., C. Holcomb, and R. S. Fuller. 1991. Immunocolocalization of Kex2 protease identifies a putative late Golgi compartment in yeast Saccharomyces cerevisiae. J. Cell Biol. 113:527-538.
35. Restrepo-Hartwig, M., and P. Ahlquist. 1996. Brome mosaic virus helicase-and polymerase-like proteins colocalize on the endoplasmic reticulum at sites of viral RNA synthesis. J. Virol. 70:8908-8916.
36. Restrepo-Hartwig, M., and P. Ahlquist. 1999. Brome mosaic virus RNA replication proteins la and 2a colocalize and la independently localizes on the yeast endoplasmic reticulum. J. Virol. 73:10303-10309.
37. Rubino, L., J. Burgyan, and M. Russo. 1995. Molecular cloning and complete nucleotide sequence of carnation Italian ringspot tombusvirus genomic and defective interfering RNAs. Arch. Virol. 140:2027-2039.
38. Rubino, L., A. Di Franco, and M. Russo. 2000. Expression of a plant virus nonstructural protein in Saccharomyces cerevisiae causes membrane proliferation and altered mitochondrial morphology. J. Gen. Virol. 81:279-286.
39. Rubino, L., and M. Russo. 1995. Characterization of resistance to cymbidium ringspot virus in transgenic plants expressing a full-length viral replicase gene. Virology 212:240-243.
40. Rubino, L., and M. Russo. 1998. Membrane targeting sequences in tombus-virus infections. Virology 252:431-437.
41. Rubino, L., F. Weber-Lotfi, A. Dietrich, C. Stussi-Garaud, and M. Russo. 2001. The open reading frame-encoded ("36K") protein of carnation Italian ringspot virus localizes to mitochondria. J. Gen. Virol. 82:29-36.
42. Russo, M., J. Burgyan, and G. P. Martelli. 1994. Molecular biology of Tombusviridae. Adv. Virus Res. 44:381-428.
43. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
44. Schlenstedt, G., E. Hurt, V. Doye, and P. A. Silver. 1993. Reconstitution of nuclear protein transport with semi-intact cells. J. Cell Biol. 123:785-798.
45. Shirako, Y., and T. M. Wilson. 1993. Complete nucleotide sequence and organization of the bipartite RNA genome of soil-borne wheat mosaic virus. Virology 195:16-32.
46. Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
47. Stevens, B. 1981. Mitochondrial structure, p. 471-504. In J. N. Strathern, E. W. Jones, and J. R. Broach (ed.), The molecular biology of the yeast Saccharomyces. Life cycle and inheritance. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
48. Strauss, J. H., and E. G. Strauss. 1999. With a little help from the host. Science 283:802-804.
49. Weber-Lotfi, F., A. Dietrich, M. Russo, and L. Rubino. 2002. Mitochondrial targeting and membrane anchoring of a viral replicase in plant and yeast cells. J. Virol. 76:10485-10496.