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Volumn 77, Issue 1, 2003, Pages 245-257

An internally located RNA hairpin enhances replication of Tomato bushy stunt virus RNAs

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 0037213937     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.77.1.245-257.2003     Document Type: Article
Times cited : (49)

References (46)
  • 1
    • 0027282394 scopus 로고
    • Different mechanisms of recognition of bacteriophage QB plus and minus strand RNAs by QB replicase
    • Barrera, I., D. Schuppli, J. M. Sogo, and H. Weher. 1993. Different mechanisms of recognition of bacteriophage QB plus and minus strand RNAs by QB replicase. J. Mol. Biol. 232:512-521.
    • (1993) J. Mol. Biol. , vol.232 , pp. 512-521
    • Barrera, I.1    Schuppli, D.2    Sogo, J.M.3    Weher, H.4
  • 2
    • 0035868852 scopus 로고    scopus 로고
    • 5′ cloverleaf in poliovirus RNA is a cis-acting replication element required for negativestrand synthesis
    • Barton, D. J., B. J. O'Donnell, and J. Flanegan. 2001. 5′ cloverleaf in poliovirus RNA is a cis-acting replication element required for negativestrand synthesis. EMBO J. 20:1439-1448.
    • (2001) EMBO J. , vol.20 , pp. 1439-1448
    • Barton, D.J.1    O'Donnell, B.J.2    Flanegan, J.3
  • 3
    • 0027194999 scopus 로고
    • Mutational analysis of cis-acting sequences and gene function in RNA3 of Cucumber mosaic virus
    • Boccard, F., and D. Baulcombe. 1993. Mutational analysis of cis-acting sequences and gene function in RNA3 of Cucumber mosaic virus. Virology 193:563-578.
    • (1993) Virology , vol.193 , pp. 563-578
    • Boccard, F.1    Baulcombe, D.2
  • 4
    • 0030332528 scopus 로고    scopus 로고
    • Comparison of the replication of positive-stranded RNA viruses of plants and animals
    • Buck, K. W. 1996. Comparison of the replication of positive-stranded RNA viruses of plants and animals. Adv. Virus Res. 47:159-251.
    • (1996) Adv. Virus Res. , vol.47 , pp. 159-251
    • Buck, K.W.1
  • 5
    • 0029002328 scopus 로고
    • Host effects and sequences essential for accumulation of defective interfering RNAs of cucumber necrosis and tomato bushy stunt tombusviruses
    • Chang, Y. C., M. Borja, H. B. Scholthof, A. O. Jackson, and T. J. Morris. 1995. Host effects and sequences essential for accumulation of defective interfering RNAs of cucumber necrosis and tomato bushy stunt tombusviruses. Virology 210:41-53.
    • (1995) Virology , vol.210 , pp. 41-53
    • Chang, Y.C.1    Borja, M.2    Scholthof, H.B.3    Jackson, A.O.4    Morris, T.J.5
  • 6
    • 0035834784 scopus 로고    scopus 로고
    • Regulatory activity of distal and core RNA elements in tombusvirus subgenomic mRNA2 transcription
    • Choi, I. R., M. Ostrovsky, G. Zhang, and K. A. White. 2001. Regulatory activity of distal and core RNA elements in tombusvirus subgenomic mRNA2 transcription. J. Biol. Chem. 276:41761-41768.
    • (2001) J. Biol. Chem. , vol.276 , pp. 41761-41768
    • Choi, I.R.1    Ostrovsky, M.2    Zhang, G.3    White, K.A.4
  • 7
    • 0036479122 scopus 로고    scopus 로고
    • An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus
    • Choi, I. R., and K. A. White. 2002. An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus. J. Biol. Chem. 277:3760-3766.
    • (2002) J. Biol. Chem. , vol.277 , pp. 3760-3766
    • Choi, I.R.1    White, K.A.2
  • 8
    • 0032695133 scopus 로고    scopus 로고
    • Functions of the 3′-untranslated regions of positive strand RNA viral genomes
    • Dreher, T. W. 1999. Functions of the 3′-untranslated regions of positive strand RNA viral genomes. Annu. Rev. Phytopathol. 37:151-174.
    • (1999) Annu. Rev. Phytopathol. , vol.37 , pp. 151-174
    • Dreher, T.W.1
  • 9
    • 0027966461 scopus 로고
    • cis-acting sequences in the replication of plant viruses with plussense RNA genomes
    • Duggal, R., F. C. Lahser, and T. C. Hall. 1994. cis-acting sequences in the replication of plant viruses with plussense RNA genomes. Annu. Rev. Phytopathol. 32:287-309.
    • (1994) Annu. Rev. Phytopathol. , vol.32 , pp. 287-309
    • Duggal, R.1    Lahser, F.C.2    Hall, T.C.3
  • 10
    • 0027222063 scopus 로고
    • Sequence and structure of defective interfering RNAs associated with cucumber necrosis virus infections
    • Finnen, R. L., and D. M. Rochon. 1993. Sequence and structure of defective interfering RNAs associated with cucumber necrosis virus infections. J. Gen. Viroh. 74:1715-1720.
    • (1993) J. Gen. Virol. , vol.74 , pp. 1715-1720
    • Finnen, R.L.1    Rochon, D.M.2
  • 11
    • 0023264034 scopus 로고
    • Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA3
    • French, R., and P. Ahlquist. 1987. Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA3. J. Virol. 61:1457-1465.
    • (1987) J. Virol. , vol.61 , pp. 1457-1465
    • French, R.1    Ahlquist, P.2
  • 12
    • 0034003829 scopus 로고    scopus 로고
    • Identification of a cis-acting replication element within the poliovirus coding region
    • Goodfellow, I., Y. Chaudhry, A. Richardson, et al. 2000. Identification of a cis-acting replication element within the poliovirus coding region. J. Virol. 74:4590-4600.
    • (2000) J. Virol. , vol.74 , pp. 4590-4600
    • Goodfellow, I.1    Chaudhry, Y.2    Richardson, A.3
  • 13
    • 0028972784 scopus 로고
    • 3′ terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA
    • Haveida, Z., and J. Burgyan. 1995. 3′ terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA. Virology 214:269-272.
    • (1995) Virology , vol.214 , pp. 269-272
    • Haveida, Z.1    Burgyan, J.2
  • 14
    • 0029089676 scopus 로고
    • Localization of cis-acting sequences essential for cymbidium ringspot tombusvirus defective interfering RNA replication
    • Haveida, Z., T. Dalmay, and J. Burgyan. 1995. Localization of cis-acting sequences essential for cymbidium ringspot tombusvirus defective interfering RNA replication. J. Gen. Virol. 76:2311-2316.
    • (1995) J. Gen. Virol. , vol.76 , pp. 2311-2316
    • Haveida, Z.1    Dalmay, T.2    Burgyan, J.3
  • 15
    • 0025277441 scopus 로고
    • The complete genome structure and synthesis of infectious RNA from clones of Tomato bushy stunt virus
    • Hearne, P. Q., D. A. Knorr, B. I. Hillman, and T. J. Morris. 1990. The complete genome structure and synthesis of infectious RNA from clones of Tomato bushy stunt virus. Virology 177:141-151.
    • (1990) Virology , vol.177 , pp. 141-151
    • Hearne, P.Q.1    Knorr, D.A.2    Hillman, B.I.3    Morris, T.J.4
  • 16
    • 0035265836 scopus 로고    scopus 로고
    • Poliovirus RNA replication requires genome circularization through a protein-protein bridge
    • Herold, J., and R. Andino. 2001. Poliovirus RNA replication requires genome circularization through a protein-protein bridge. Mol. Cell 7:581-591.
    • (2001) Mol. Cell , vol.7 , pp. 581-591
    • Herold, J.1    Andino, R.2
  • 17
    • 0023646739 scopus 로고
    • A defective interfering RNA that contains a mosaic of a plant virus genome
    • Hillman, B. I., J. C. Carrington, and T. J. Morris. 1987. A defective interfering RNA that contains a mosaic of a plant virus genome. Cell 51:427-433.
    • (1987) Cell , vol.51 , pp. 427-433
    • Hillman, B.I.1    Carrington, J.C.2    Morris, T.J.3
  • 18
    • 0024633149 scopus 로고
    • Organization of the Tomato bushy stunt virus genome: Characterization of the coat protein gene and 3′ terminus
    • Hillman, B. I., P. Hearne, D. Rochon, and T. J. Morris. 1989. Organization of the Tomato bushy stunt virus genome: Characterization of the coat protein gene and 3′ terminus. Virology 169:42-50.
    • (1989) Virology , vol.169 , pp. 42-50
    • Hillman, B.I.1    Hearne, P.2    Rochon, D.3    Morris, T.J.4
  • 19
    • 0026060634 scopus 로고
    • Specific cessation of minus-strand RNA accumulation at an early stage of tobacco mosaic virus infection
    • Ishikawa, M., T. Meshi, T. Ohno, and Y. Okada. 1991. Specific cessation of minus-strand RNA accumulation at an early stage of tobacco mosaic virus infection. J. Virol. 65:861-868.
    • (1991) J. Virol. , vol.65 , pp. 861-868
    • Ishikawa, M.1    Meshi, T.2    Ohno, T.3    Okada, Y.4
  • 20
    • 0032478255 scopus 로고    scopus 로고
    • Brome mosaic virus RNA replication protein la dramatically increases in vivo stability but not translation of viral genomic RNA3
    • Janda, M., and P. Ahlquist. 1998. Brome mosaic virus RNA replication protein la dramatically increases in vivo stability but not translation of viral genomic RNA3. Proc. Natl. Acad. Sci. USA 95:2227-2232.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 2227-2232
    • Janda, M.1    Ahlquist, P.2
  • 21
    • 0034984219 scopus 로고    scopus 로고
    • Essential role of cyclization sequences in flavivirus RNA replication
    • Khromykh, A. A., H. Meka, K. J. Guyatt, and E. G. Westaway. 2001. Essential role of cyclization sequences in flavivirus RNA replication. J. Virol. 75:6719-6728.
    • (2001) J. Virol. , vol.75 , pp. 6719-6728
    • Khromykh, A.A.1    Meka, H.2    Guyatt, K.J.3    Westaway, E.G.4
  • 22
    • 0033544721 scopus 로고    scopus 로고
    • A long-range pseudoknot in QB RNA is essential for replication
    • Klovins, J., and J. van Duin. 1999. A long-range pseudoknot in QB RNA is essential for replication. J. Mol. Biol. 294:875-884.
    • (1999) J. Mol. Biol. , vol.294 , pp. 875-884
    • Klovins, J.1    Van Duin, J.2
  • 23
    • 0026026113 scopus 로고
    • De novo generation of defective interfering RNAs of Tomato bushy stunt virus by high multiplicity passage
    • Knorr, D. A., R. H. Mullin, P. Q. Hearne, and T. Morris. 1991. De novo generation of defective interfering RNAs of Tomato bushy stunt virus by high multiplicity passage. Virology 181:193-202.
    • (1991) Virology , vol.181 , pp. 193-202
    • Knorr, D.A.1    Mullin, R.H.2    Hearne, P.Q.3    Morris, T.4
  • 25
    • 0031762554 scopus 로고    scopus 로고
    • The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication
    • McKnight, K. L., and S. M. Lemon. 1998. The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication. RNA 4:1569-1584.
    • (1998) RNA , vol.4 , pp. 1569-1584
    • McKnight, K.L.1    Lemon, S.M.2
  • 26
    • 0033570067 scopus 로고    scopus 로고
    • RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus
    • Nagy, P. D., J. Pogany, and A. E. Simon. 1999. RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus. EMBO J. 18:5653-5665.
    • (1999) EMBO J. , vol.18 , pp. 5653-5665
    • Nagy, P.D.1    Pogany, J.2    Simon, A.E.3
  • 27
    • 0034715555 scopus 로고    scopus 로고
    • Partial purification and characterization of Cucumber necrosis virus and Tomato busy stunt virus RNA-dependent RNA polymerases: Similarities and differences in template usage between tombusvirus and carmovirus RNA-dependent RNA polymerases
    • Nagy, P. D., and J. Pogany. 2000. Partial purification and characterization of Cucumber necrosis virus and Tomato busy stunt virus RNA-dependent RNA polymerases: Similarities and differences in template usage between tombusvirus and carmovirus RNA-dependent RNA polymerases. Virology 276:279-288.
    • (2000) Virology , vol.276 , pp. 279-288
    • Nagy, P.D.1    Pogany, J.2
  • 28
    • 0031780865 scopus 로고    scopus 로고
    • Uncoupled expression of p33 and p92 permits amplification of Tomato bushy stunt virus RNAs
    • Oster, S. K., B. Wu, and K. A. White. 1998. Uncoupled expression of p33 and p92 permits amplification of Tomato bushy stunt virus RNAs. J. Virol. 72: 5845-5851.
    • (1998) J. Virol. , vol.72 , pp. 5845-5851
    • Oster, S.K.1    Wu, B.2    White, K.A.3
  • 29
    • 0036290363 scopus 로고    scopus 로고
    • Analysis of minimal promoter sequences for plus-strand synthesis by the Cucumber necrosis virus RNA-dependent RNA polymerase
    • Panavas, T., J. Pogany, and P. D. Nagy. 2002. Analysis of minimal promoter sequences for plus-strand synthesis by the Cucumber necrosis virus RNA-dependent RNA polymerase. Virology 296:263-274.
    • (2002) Virology , vol.296 , pp. 263-274
    • Panavas, T.1    Pogany, J.2    Nagy, P.D.3
  • 30
    • 0037213878 scopus 로고    scopus 로고
    • The RNA replication enhancer element of tombusviruses contains two interchangeable hairpins that are functional during plus-strand synthesis
    • Panavas, T., and P. D. Nagy. 2002. The RNA replication enhancer element of tombusviruses contains two interchangeable hairpins that are functional during plus-strand synthesis. J. Virol. 77:258-269.
    • (2002) J. Virol. , vol.77 , pp. 258-269
    • Panavas, T.1    Nagy, P.D.2
  • 31
    • 0035987132 scopus 로고    scopus 로고
    • Efficient infection of Nicotiana benthamiana by Tomato bushy stunt virus is facilitated by the coat protein and maintained by p19 through suppression of gene silencing
    • Qu, F., and T. J. Morris. 2002. Efficient infection of Nicotiana benthamiana by Tomato bushy stunt virus is facilitated by the coat protein and maintained by p19 through suppression of gene silencing. Mol. Plant-Microbe Interact. 15:193-202.
    • (2002) Mol. Plant-Microbe Interact. , vol.15 , pp. 193-202
    • Qu, F.1    Morris, T.J.2
  • 32
    • 0033616517 scopus 로고    scopus 로고
    • Enhancer-like properties of an RNA element that modulates tomhusvirus RNA accumulation
    • Ray, D., and K. A. White. 1999. Enhancer-like properties of an RNA element that modulates tomhusvirus RNA accumulation. Virology 256:162-171.
    • (1999) Virology , vol.256 , pp. 162-171
    • Ray, D.1    White, K.A.2
  • 34
    • 0028832792 scopus 로고
    • Tomato bushy stunt virus spread is regulated by two nested genes that function in cell-to-cell movement and host-dependent systemic invasion
    • Scholthof, H. B., K. B. Scholthof, M. Kikkert, and A. O. Jackson. 1995. Tomato bushy stunt virus spread is regulated by two nested genes that function in cell-to-cell movement and host-dependent systemic invasion. Virology 213:425-438.
    • (1995) Virology , vol.213 , pp. 425-438
    • Scholthof, H.B.1    Scholthof, K.B.2    Kikkert, M.3    Jackson, A.O.4
  • 35
    • 0029347008 scopus 로고
    • Identification of Tomato bushy stunt virus host-specific symptom determinants by expression of individual genes from a potato virus X vector
    • Scholthof, H. B., K. B. Scholthof, and A. O. Jackson. 1995. Identification of Tomato bushy stunt virus host-specific symptom determinants by expression of individual genes from a potato virus X vector. Plant Cell 7:1157-1172.
    • (1995) Plant Cell , vol.7 , pp. 1157-1172
    • Scholthof, H.B.1    Scholthof, K.B.2    Jackson, A.O.3
  • 36
    • 0030727722 scopus 로고    scopus 로고
    • The 3′ untranslated region of alfalfa mosaic virus RNA3 contains a core promoter for minus-strand RNA synthesis and an enhancer element
    • van Rossum, C. M. A., C. B. E. M. Reusken, F. Brederode, and J. F. Bol. 1997. The 3′ untranslated region of alfalfa mosaic virus RNA3 contains a core promoter for minus-strand RNA synthesis and an enhancer element. J. Gen. Virol. 78:3045-3049.
    • (1997) J. Gen. Virol. , vol.78 , pp. 3045-3049
    • Van Rossum, C.M.A.1    Reusken, C.B.E.M.2    Brederode, F.3    Bol, J.F.4
  • 37
    • 0033598840 scopus 로고    scopus 로고
    • Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants
    • Voinnet, O., Y. M. Pinto, and D. C. Baulcombe. 1999. Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants. Proc. Natl. Acad. Sci. USA 96:14147-14152.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 14147-14152
    • Voinnet, O.1    Pinto, Y.M.2    Baulcombe, D.C.3
  • 38
    • 0028108791 scopus 로고
    • Enhanced competitiveness of Tomato bushy stunt virus defective interfering RNAs by segment duplication or nucleotide insertion
    • White, K. A., and T. J. Morris. 1994. Enhanced competitiveness of Tomato bushy stunt virus defective interfering RNAs by segment duplication or nucleotide insertion. J. Virol. 68:6092-6096.
    • (1994) J. Virol. , vol.68 , pp. 6092-6096
    • White, K.A.1    Morris, T.J.2
  • 39
    • 0028147380 scopus 로고
    • Nonhomologous RNA recombination in tombusviruses: Generation and evolution of defective interfering RNAs hy stepwise deletions
    • White, K. A., and T. J. Morris. 1994. Nonhomologous RNA recombination in tombusviruses: Generation and evolution of defective interfering RNAs hy stepwise deletions. J. Virol. 68:14-24.
    • (1994) J. Virol. , vol.68 , pp. 14-24
    • White, K.A.1    Morris, T.J.2
  • 40
    • 0031775401 scopus 로고    scopus 로고
    • Formation and amplification of a novel tombusvirus defective RNA which lacks the 5′ nontranslated region of the viral genome
    • Wu, B., and K. A. White. 1998. Formation and amplification of a novel tombusvirus defective RNA which lacks the 5′ nontranslated region of the viral genome. J. Virol. 72:9897-9905.
    • (1998) J. Virol. , vol.72 , pp. 9897-9905
    • Wu, B.1    White, K.A.2
  • 41
    • 0032845271 scopus 로고    scopus 로고
    • A primary determinant of cap-independent translation is located in the 3′-proximal region of the Tomato bushy stunt virus genome
    • Wu, B., and K. A. White. 1999. A primary determinant of cap-independent translation is located in the 3′-proximal region of the Tomato bushy stunt virus genome. J. Virol. 73:8982-8988.
    • (1999) J. Virol. , vol.73 , pp. 8982-8988
    • Wu, B.1    White, K.A.2
  • 42
    • 0035951298 scopus 로고    scopus 로고
    • An RNA domain within the 5′ untranslated region the Tomato bushy stunt virus genome modulates viral RNA replication
    • Wu, B., W. B. Vanti, and K. A. White. 2001. An RNA domain within the 5′ untranslated region the Tomato bushy stunt virus genome modulates viral RNA replication. J. Mol. Biol. 305:741-756.
    • (2001) J. Mol. Biol. , vol.305 , pp. 741-756
    • Wu, B.1    Vanti, W.B.2    White, K.A.3
  • 43
    • 0035844132 scopus 로고    scopus 로고
    • In vitro RNA synthesis from exogenous dengue viral RNA templates requires long-range interactions between 5′- and 3′-terminal regions that influence RNA structure
    • You, S., B. Falgout, L. Markoff, and R. Padmanabhan. 2001. In vitro RNA synthesis from exogenous dengue viral RNA templates requires long-range interactions between 5′- and 3′-terminal regions that influence RNA structure. J. Biol. Chem. 276:15581-15591.
    • (2001) J. Biol. Chem. , vol.276 , pp. 15581-15591
    • You, S.1    Falgout, B.2    Markoff, L.3    Padmanabhan, R.4
  • 44
    • 0032899861 scopus 로고    scopus 로고
    • Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus
    • Zhang, G., V. Slowinski, and K. A. White. 1999. Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus. RNA 5:550-561.
    • (1999) RNA , vol.5 , pp. 550-561
    • Zhang, G.1    Slowinski, V.2    White, K.A.3
  • 45
    • 0029938867 scopus 로고    scopus 로고
    • Analysis of cis-acting elements required for replication of barley stripe mosaic virus RNAs
    • Zhou, H., and A. O. Jackson. 1996. Analysis of cis-acting elements required for replication of barley stripe mosaic virus RNAs. Virology 219:150-160.
    • (1996) Virology , vol.219 , pp. 150-160
    • Zhou, H.1    Jackson, A.O.2
  • 46
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • J. Barciszewski and B. F. C. Clark (ed.). Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Zuker, M., D. H. Mathews, and D. H. Turner. 1999. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide, p. 11-43. In J. Barciszewski and B. F. C. Clark (ed.), RNA Biochemistry and Biotechnology. Kluwer Academic Publishers, Dordrecht, The Netherlands.
    • (1999) RNA Biochemistry and Biotechnology , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


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