-
1
-
-
0027282394
-
Different mechanisms of recognition of bacteriophage QB plus and minus strand RNAs by QB replicase
-
Barrera, I., D. Schuppli, J. M. Sogo, and H. Weher. 1993. Different mechanisms of recognition of bacteriophage QB plus and minus strand RNAs by QB replicase. J. Mol. Biol. 232:512-521.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 512-521
-
-
Barrera, I.1
Schuppli, D.2
Sogo, J.M.3
Weher, H.4
-
2
-
-
0035868852
-
5′ cloverleaf in poliovirus RNA is a cis-acting replication element required for negativestrand synthesis
-
Barton, D. J., B. J. O'Donnell, and J. Flanegan. 2001. 5′ cloverleaf in poliovirus RNA is a cis-acting replication element required for negativestrand synthesis. EMBO J. 20:1439-1448.
-
(2001)
EMBO J.
, vol.20
, pp. 1439-1448
-
-
Barton, D.J.1
O'Donnell, B.J.2
Flanegan, J.3
-
3
-
-
0027194999
-
Mutational analysis of cis-acting sequences and gene function in RNA3 of Cucumber mosaic virus
-
Boccard, F., and D. Baulcombe. 1993. Mutational analysis of cis-acting sequences and gene function in RNA3 of Cucumber mosaic virus. Virology 193:563-578.
-
(1993)
Virology
, vol.193
, pp. 563-578
-
-
Boccard, F.1
Baulcombe, D.2
-
4
-
-
0030332528
-
Comparison of the replication of positive-stranded RNA viruses of plants and animals
-
Buck, K. W. 1996. Comparison of the replication of positive-stranded RNA viruses of plants and animals. Adv. Virus Res. 47:159-251.
-
(1996)
Adv. Virus Res.
, vol.47
, pp. 159-251
-
-
Buck, K.W.1
-
5
-
-
0029002328
-
Host effects and sequences essential for accumulation of defective interfering RNAs of cucumber necrosis and tomato bushy stunt tombusviruses
-
Chang, Y. C., M. Borja, H. B. Scholthof, A. O. Jackson, and T. J. Morris. 1995. Host effects and sequences essential for accumulation of defective interfering RNAs of cucumber necrosis and tomato bushy stunt tombusviruses. Virology 210:41-53.
-
(1995)
Virology
, vol.210
, pp. 41-53
-
-
Chang, Y.C.1
Borja, M.2
Scholthof, H.B.3
Jackson, A.O.4
Morris, T.J.5
-
6
-
-
0035834784
-
Regulatory activity of distal and core RNA elements in tombusvirus subgenomic mRNA2 transcription
-
Choi, I. R., M. Ostrovsky, G. Zhang, and K. A. White. 2001. Regulatory activity of distal and core RNA elements in tombusvirus subgenomic mRNA2 transcription. J. Biol. Chem. 276:41761-41768.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 41761-41768
-
-
Choi, I.R.1
Ostrovsky, M.2
Zhang, G.3
White, K.A.4
-
7
-
-
0036479122
-
An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus
-
Choi, I. R., and K. A. White. 2002. An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus. J. Biol. Chem. 277:3760-3766.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 3760-3766
-
-
Choi, I.R.1
White, K.A.2
-
8
-
-
0032695133
-
Functions of the 3′-untranslated regions of positive strand RNA viral genomes
-
Dreher, T. W. 1999. Functions of the 3′-untranslated regions of positive strand RNA viral genomes. Annu. Rev. Phytopathol. 37:151-174.
-
(1999)
Annu. Rev. Phytopathol.
, vol.37
, pp. 151-174
-
-
Dreher, T.W.1
-
9
-
-
0027966461
-
cis-acting sequences in the replication of plant viruses with plussense RNA genomes
-
Duggal, R., F. C. Lahser, and T. C. Hall. 1994. cis-acting sequences in the replication of plant viruses with plussense RNA genomes. Annu. Rev. Phytopathol. 32:287-309.
-
(1994)
Annu. Rev. Phytopathol.
, vol.32
, pp. 287-309
-
-
Duggal, R.1
Lahser, F.C.2
Hall, T.C.3
-
10
-
-
0027222063
-
Sequence and structure of defective interfering RNAs associated with cucumber necrosis virus infections
-
Finnen, R. L., and D. M. Rochon. 1993. Sequence and structure of defective interfering RNAs associated with cucumber necrosis virus infections. J. Gen. Viroh. 74:1715-1720.
-
(1993)
J. Gen. Virol.
, vol.74
, pp. 1715-1720
-
-
Finnen, R.L.1
Rochon, D.M.2
-
11
-
-
0023264034
-
Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA3
-
French, R., and P. Ahlquist. 1987. Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA3. J. Virol. 61:1457-1465.
-
(1987)
J. Virol.
, vol.61
, pp. 1457-1465
-
-
French, R.1
Ahlquist, P.2
-
12
-
-
0034003829
-
Identification of a cis-acting replication element within the poliovirus coding region
-
Goodfellow, I., Y. Chaudhry, A. Richardson, et al. 2000. Identification of a cis-acting replication element within the poliovirus coding region. J. Virol. 74:4590-4600.
-
(2000)
J. Virol.
, vol.74
, pp. 4590-4600
-
-
Goodfellow, I.1
Chaudhry, Y.2
Richardson, A.3
-
13
-
-
0028972784
-
3′ terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA
-
Haveida, Z., and J. Burgyan. 1995. 3′ terminal putative stem-loop structure required for the accumulation of cymbidium ringspot viral RNA. Virology 214:269-272.
-
(1995)
Virology
, vol.214
, pp. 269-272
-
-
Haveida, Z.1
Burgyan, J.2
-
14
-
-
0029089676
-
Localization of cis-acting sequences essential for cymbidium ringspot tombusvirus defective interfering RNA replication
-
Haveida, Z., T. Dalmay, and J. Burgyan. 1995. Localization of cis-acting sequences essential for cymbidium ringspot tombusvirus defective interfering RNA replication. J. Gen. Virol. 76:2311-2316.
-
(1995)
J. Gen. Virol.
, vol.76
, pp. 2311-2316
-
-
Haveida, Z.1
Dalmay, T.2
Burgyan, J.3
-
15
-
-
0025277441
-
The complete genome structure and synthesis of infectious RNA from clones of Tomato bushy stunt virus
-
Hearne, P. Q., D. A. Knorr, B. I. Hillman, and T. J. Morris. 1990. The complete genome structure and synthesis of infectious RNA from clones of Tomato bushy stunt virus. Virology 177:141-151.
-
(1990)
Virology
, vol.177
, pp. 141-151
-
-
Hearne, P.Q.1
Knorr, D.A.2
Hillman, B.I.3
Morris, T.J.4
-
16
-
-
0035265836
-
Poliovirus RNA replication requires genome circularization through a protein-protein bridge
-
Herold, J., and R. Andino. 2001. Poliovirus RNA replication requires genome circularization through a protein-protein bridge. Mol. Cell 7:581-591.
-
(2001)
Mol. Cell
, vol.7
, pp. 581-591
-
-
Herold, J.1
Andino, R.2
-
17
-
-
0023646739
-
A defective interfering RNA that contains a mosaic of a plant virus genome
-
Hillman, B. I., J. C. Carrington, and T. J. Morris. 1987. A defective interfering RNA that contains a mosaic of a plant virus genome. Cell 51:427-433.
-
(1987)
Cell
, vol.51
, pp. 427-433
-
-
Hillman, B.I.1
Carrington, J.C.2
Morris, T.J.3
-
18
-
-
0024633149
-
Organization of the Tomato bushy stunt virus genome: Characterization of the coat protein gene and 3′ terminus
-
Hillman, B. I., P. Hearne, D. Rochon, and T. J. Morris. 1989. Organization of the Tomato bushy stunt virus genome: Characterization of the coat protein gene and 3′ terminus. Virology 169:42-50.
-
(1989)
Virology
, vol.169
, pp. 42-50
-
-
Hillman, B.I.1
Hearne, P.2
Rochon, D.3
Morris, T.J.4
-
19
-
-
0026060634
-
Specific cessation of minus-strand RNA accumulation at an early stage of tobacco mosaic virus infection
-
Ishikawa, M., T. Meshi, T. Ohno, and Y. Okada. 1991. Specific cessation of minus-strand RNA accumulation at an early stage of tobacco mosaic virus infection. J. Virol. 65:861-868.
-
(1991)
J. Virol.
, vol.65
, pp. 861-868
-
-
Ishikawa, M.1
Meshi, T.2
Ohno, T.3
Okada, Y.4
-
20
-
-
0032478255
-
Brome mosaic virus RNA replication protein la dramatically increases in vivo stability but not translation of viral genomic RNA3
-
Janda, M., and P. Ahlquist. 1998. Brome mosaic virus RNA replication protein la dramatically increases in vivo stability but not translation of viral genomic RNA3. Proc. Natl. Acad. Sci. USA 95:2227-2232.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 2227-2232
-
-
Janda, M.1
Ahlquist, P.2
-
21
-
-
0034984219
-
Essential role of cyclization sequences in flavivirus RNA replication
-
Khromykh, A. A., H. Meka, K. J. Guyatt, and E. G. Westaway. 2001. Essential role of cyclization sequences in flavivirus RNA replication. J. Virol. 75:6719-6728.
-
(2001)
J. Virol.
, vol.75
, pp. 6719-6728
-
-
Khromykh, A.A.1
Meka, H.2
Guyatt, K.J.3
Westaway, E.G.4
-
22
-
-
0033544721
-
A long-range pseudoknot in QB RNA is essential for replication
-
Klovins, J., and J. van Duin. 1999. A long-range pseudoknot in QB RNA is essential for replication. J. Mol. Biol. 294:875-884.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 875-884
-
-
Klovins, J.1
Van Duin, J.2
-
23
-
-
0026026113
-
De novo generation of defective interfering RNAs of Tomato bushy stunt virus by high multiplicity passage
-
Knorr, D. A., R. H. Mullin, P. Q. Hearne, and T. Morris. 1991. De novo generation of defective interfering RNAs of Tomato bushy stunt virus by high multiplicity passage. Virology 181:193-202.
-
(1991)
Virology
, vol.181
, pp. 193-202
-
-
Knorr, D.A.1
Mullin, R.H.2
Hearne, P.Q.3
Morris, T.4
-
24
-
-
0029687684
-
Chemical and computer probing of RNA structure
-
Kolchanov, N. A., I. I. Titov, I. E. Vlassova, and V. V. Vlassov. 1996. Chemical and computer probing of RNA structure. Prog. Nucleic Acid Res. Mol. Biol. 53:131-196.
-
(1996)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.53
, pp. 131-196
-
-
Kolchanov, N.A.1
Titov, I.I.2
Vlassova, I.E.3
Vlassov, V.V.4
-
25
-
-
0031762554
-
The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication
-
McKnight, K. L., and S. M. Lemon. 1998. The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication. RNA 4:1569-1584.
-
(1998)
RNA
, vol.4
, pp. 1569-1584
-
-
McKnight, K.L.1
Lemon, S.M.2
-
26
-
-
0033570067
-
RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus
-
Nagy, P. D., J. Pogany, and A. E. Simon. 1999. RNA elements required for RNA recombination function as replication enhancers in vitro and in vivo in a plus-strand RNA virus. EMBO J. 18:5653-5665.
-
(1999)
EMBO J.
, vol.18
, pp. 5653-5665
-
-
Nagy, P.D.1
Pogany, J.2
Simon, A.E.3
-
27
-
-
0034715555
-
Partial purification and characterization of Cucumber necrosis virus and Tomato busy stunt virus RNA-dependent RNA polymerases: Similarities and differences in template usage between tombusvirus and carmovirus RNA-dependent RNA polymerases
-
Nagy, P. D., and J. Pogany. 2000. Partial purification and characterization of Cucumber necrosis virus and Tomato busy stunt virus RNA-dependent RNA polymerases: Similarities and differences in template usage between tombusvirus and carmovirus RNA-dependent RNA polymerases. Virology 276:279-288.
-
(2000)
Virology
, vol.276
, pp. 279-288
-
-
Nagy, P.D.1
Pogany, J.2
-
28
-
-
0031780865
-
Uncoupled expression of p33 and p92 permits amplification of Tomato bushy stunt virus RNAs
-
Oster, S. K., B. Wu, and K. A. White. 1998. Uncoupled expression of p33 and p92 permits amplification of Tomato bushy stunt virus RNAs. J. Virol. 72: 5845-5851.
-
(1998)
J. Virol.
, vol.72
, pp. 5845-5851
-
-
Oster, S.K.1
Wu, B.2
White, K.A.3
-
29
-
-
0036290363
-
Analysis of minimal promoter sequences for plus-strand synthesis by the Cucumber necrosis virus RNA-dependent RNA polymerase
-
Panavas, T., J. Pogany, and P. D. Nagy. 2002. Analysis of minimal promoter sequences for plus-strand synthesis by the Cucumber necrosis virus RNA-dependent RNA polymerase. Virology 296:263-274.
-
(2002)
Virology
, vol.296
, pp. 263-274
-
-
Panavas, T.1
Pogany, J.2
Nagy, P.D.3
-
30
-
-
0037213878
-
The RNA replication enhancer element of tombusviruses contains two interchangeable hairpins that are functional during plus-strand synthesis
-
Panavas, T., and P. D. Nagy. 2002. The RNA replication enhancer element of tombusviruses contains two interchangeable hairpins that are functional during plus-strand synthesis. J. Virol. 77:258-269.
-
(2002)
J. Virol.
, vol.77
, pp. 258-269
-
-
Panavas, T.1
Nagy, P.D.2
-
31
-
-
0035987132
-
Efficient infection of Nicotiana benthamiana by Tomato bushy stunt virus is facilitated by the coat protein and maintained by p19 through suppression of gene silencing
-
Qu, F., and T. J. Morris. 2002. Efficient infection of Nicotiana benthamiana by Tomato bushy stunt virus is facilitated by the coat protein and maintained by p19 through suppression of gene silencing. Mol. Plant-Microbe Interact. 15:193-202.
-
(2002)
Mol. Plant-Microbe Interact.
, vol.15
, pp. 193-202
-
-
Qu, F.1
Morris, T.J.2
-
32
-
-
0033616517
-
Enhancer-like properties of an RNA element that modulates tomhusvirus RNA accumulation
-
Ray, D., and K. A. White. 1999. Enhancer-like properties of an RNA element that modulates tomhusvirus RNA accumulation. Virology 256:162-171.
-
(1999)
Virology
, vol.256
, pp. 162-171
-
-
Ray, D.1
White, K.A.2
-
34
-
-
0028832792
-
Tomato bushy stunt virus spread is regulated by two nested genes that function in cell-to-cell movement and host-dependent systemic invasion
-
Scholthof, H. B., K. B. Scholthof, M. Kikkert, and A. O. Jackson. 1995. Tomato bushy stunt virus spread is regulated by two nested genes that function in cell-to-cell movement and host-dependent systemic invasion. Virology 213:425-438.
-
(1995)
Virology
, vol.213
, pp. 425-438
-
-
Scholthof, H.B.1
Scholthof, K.B.2
Kikkert, M.3
Jackson, A.O.4
-
35
-
-
0029347008
-
Identification of Tomato bushy stunt virus host-specific symptom determinants by expression of individual genes from a potato virus X vector
-
Scholthof, H. B., K. B. Scholthof, and A. O. Jackson. 1995. Identification of Tomato bushy stunt virus host-specific symptom determinants by expression of individual genes from a potato virus X vector. Plant Cell 7:1157-1172.
-
(1995)
Plant Cell
, vol.7
, pp. 1157-1172
-
-
Scholthof, H.B.1
Scholthof, K.B.2
Jackson, A.O.3
-
36
-
-
0030727722
-
The 3′ untranslated region of alfalfa mosaic virus RNA3 contains a core promoter for minus-strand RNA synthesis and an enhancer element
-
van Rossum, C. M. A., C. B. E. M. Reusken, F. Brederode, and J. F. Bol. 1997. The 3′ untranslated region of alfalfa mosaic virus RNA3 contains a core promoter for minus-strand RNA synthesis and an enhancer element. J. Gen. Virol. 78:3045-3049.
-
(1997)
J. Gen. Virol.
, vol.78
, pp. 3045-3049
-
-
Van Rossum, C.M.A.1
Reusken, C.B.E.M.2
Brederode, F.3
Bol, J.F.4
-
37
-
-
0033598840
-
Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants
-
Voinnet, O., Y. M. Pinto, and D. C. Baulcombe. 1999. Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants. Proc. Natl. Acad. Sci. USA 96:14147-14152.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14147-14152
-
-
Voinnet, O.1
Pinto, Y.M.2
Baulcombe, D.C.3
-
38
-
-
0028108791
-
Enhanced competitiveness of Tomato bushy stunt virus defective interfering RNAs by segment duplication or nucleotide insertion
-
White, K. A., and T. J. Morris. 1994. Enhanced competitiveness of Tomato bushy stunt virus defective interfering RNAs by segment duplication or nucleotide insertion. J. Virol. 68:6092-6096.
-
(1994)
J. Virol.
, vol.68
, pp. 6092-6096
-
-
White, K.A.1
Morris, T.J.2
-
39
-
-
0028147380
-
Nonhomologous RNA recombination in tombusviruses: Generation and evolution of defective interfering RNAs hy stepwise deletions
-
White, K. A., and T. J. Morris. 1994. Nonhomologous RNA recombination in tombusviruses: Generation and evolution of defective interfering RNAs hy stepwise deletions. J. Virol. 68:14-24.
-
(1994)
J. Virol.
, vol.68
, pp. 14-24
-
-
White, K.A.1
Morris, T.J.2
-
40
-
-
0031775401
-
Formation and amplification of a novel tombusvirus defective RNA which lacks the 5′ nontranslated region of the viral genome
-
Wu, B., and K. A. White. 1998. Formation and amplification of a novel tombusvirus defective RNA which lacks the 5′ nontranslated region of the viral genome. J. Virol. 72:9897-9905.
-
(1998)
J. Virol.
, vol.72
, pp. 9897-9905
-
-
Wu, B.1
White, K.A.2
-
41
-
-
0032845271
-
A primary determinant of cap-independent translation is located in the 3′-proximal region of the Tomato bushy stunt virus genome
-
Wu, B., and K. A. White. 1999. A primary determinant of cap-independent translation is located in the 3′-proximal region of the Tomato bushy stunt virus genome. J. Virol. 73:8982-8988.
-
(1999)
J. Virol.
, vol.73
, pp. 8982-8988
-
-
Wu, B.1
White, K.A.2
-
42
-
-
0035951298
-
An RNA domain within the 5′ untranslated region the Tomato bushy stunt virus genome modulates viral RNA replication
-
Wu, B., W. B. Vanti, and K. A. White. 2001. An RNA domain within the 5′ untranslated region the Tomato bushy stunt virus genome modulates viral RNA replication. J. Mol. Biol. 305:741-756.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 741-756
-
-
Wu, B.1
Vanti, W.B.2
White, K.A.3
-
43
-
-
0035844132
-
In vitro RNA synthesis from exogenous dengue viral RNA templates requires long-range interactions between 5′- and 3′-terminal regions that influence RNA structure
-
You, S., B. Falgout, L. Markoff, and R. Padmanabhan. 2001. In vitro RNA synthesis from exogenous dengue viral RNA templates requires long-range interactions between 5′- and 3′-terminal regions that influence RNA structure. J. Biol. Chem. 276:15581-15591.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 15581-15591
-
-
You, S.1
Falgout, B.2
Markoff, L.3
Padmanabhan, R.4
-
44
-
-
0032899861
-
Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus
-
Zhang, G., V. Slowinski, and K. A. White. 1999. Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus. RNA 5:550-561.
-
(1999)
RNA
, vol.5
, pp. 550-561
-
-
Zhang, G.1
Slowinski, V.2
White, K.A.3
-
45
-
-
0029938867
-
Analysis of cis-acting elements required for replication of barley stripe mosaic virus RNAs
-
Zhou, H., and A. O. Jackson. 1996. Analysis of cis-acting elements required for replication of barley stripe mosaic virus RNAs. Virology 219:150-160.
-
(1996)
Virology
, vol.219
, pp. 150-160
-
-
Zhou, H.1
Jackson, A.O.2
-
46
-
-
0002287019
-
Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
-
J. Barciszewski and B. F. C. Clark (ed.). Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Zuker, M., D. H. Mathews, and D. H. Turner. 1999. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide, p. 11-43. In J. Barciszewski and B. F. C. Clark (ed.), RNA Biochemistry and Biotechnology. Kluwer Academic Publishers, Dordrecht, The Netherlands.
-
(1999)
RNA Biochemistry and Biotechnology
, pp. 11-43
-
-
Zuker, M.1
Mathews, D.H.2
Turner, D.H.3
|