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Volumn 383, Issue 2, 2008, Pages 270-278

A dual-probe hybridization method for reducing variability in single nucleotide polymorphism analysis with oligonucleotide microarrays

Author keywords

Genotyping; Hybridization; Microarray; Normalization; Single nucleotide polymorphism

Indexed keywords

MICROARRAYS; OLIGONUCLEOTIDES; POLYMORPHISM; PROBES; RELIABILITY ANALYSIS;

EID: 54249163490     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2008.09.003     Document Type: Article
Times cited : (4)

References (28)
  • 1
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: From disarray to consolidation and consensus
    • Allison D.B., Cui X.Q., Page G.P., and Sabripour M. Microarray data analysis: From disarray to consolidation and consensus. Genetics 7 (2006) 55-65
    • (2006) Genetics , vol.7 , pp. 55-65
    • Allison, D.B.1    Cui, X.Q.2    Page, G.P.3    Sabripour, M.4
  • 2
    • 31444431754 scopus 로고    scopus 로고
    • Reliability and reproducibility issues in DNA microarray measurements
    • Draghici S., Khatri P., Eklund A.C., and Szallasi Z. Reliability and reproducibility issues in DNA microarray measurements. Trends Genet. 22 (2006) 101-109
    • (2006) Trends Genet. , vol.22 , pp. 101-109
    • Draghici, S.1    Khatri, P.2    Eklund, A.C.3    Szallasi, Z.4
  • 4
    • 0142151385 scopus 로고    scopus 로고
    • Overcoming technical variation and biological variation in quantitative proteomics
    • Molloy M.P., Brzezinski E.E., Hang J.Q., McDowell M.T., and VanBogelen R.A. Overcoming technical variation and biological variation in quantitative proteomics. Proteomics 3 (2003) 1912-1919
    • (2003) Proteomics , vol.3 , pp. 1912-1919
    • Molloy, M.P.1    Brzezinski, E.E.2    Hang, J.Q.3    McDowell, M.T.4    VanBogelen, R.A.5
  • 5
    • 0036793353 scopus 로고    scopus 로고
    • Assessing sources of variability in microarray gene expression data
    • Spruill S.E., Lu J., Hardy S., and Weir B. Assessing sources of variability in microarray gene expression data. BioTechniques 33 (2002) 916-923
    • (2002) BioTechniques , vol.33 , pp. 916-923
    • Spruill, S.E.1    Lu, J.2    Hardy, S.3    Weir, B.4
  • 7
    • 0036789519 scopus 로고    scopus 로고
    • Variation in gene expression within and among natural populations
    • Oleksiak M.F., Churchill G.A., and Crawford D.L. Variation in gene expression within and among natural populations. Nat. Genet. 32 (2002) 261-266
    • (2002) Nat. Genet. , vol.32 , pp. 261-266
    • Oleksiak, M.F.1    Churchill, G.A.2    Crawford, D.L.3
  • 8
    • 1842680967 scopus 로고    scopus 로고
    • Reproducibility, sources of variability, pooling, and sample size: Important considerations for the design of high-density oligonucleotide array experiments
    • Han E.S., Wu Y., McCarter R., Nelson J.F., Richardson A., and Hilsenbeck S.G. Reproducibility, sources of variability, pooling, and sample size: Important considerations for the design of high-density oligonucleotide array experiments. J. Gerontol. A 59 (2004) 306-315
    • (2004) J. Gerontol. A , vol.59 , pp. 306-315
    • Han, E.S.1    Wu, Y.2    McCarter, R.3    Nelson, J.F.4    Richardson, A.5    Hilsenbeck, S.G.6
  • 9
    • 2942576225 scopus 로고    scopus 로고
    • Sources of variability and effect of experimental approach on expression profiling data interpretation
    • Bakay M., Chen Y.W., Borup R., Zhao P., Nagaraju K., and Hoffman E.P. Sources of variability and effect of experimental approach on expression profiling data interpretation. BMC Bioinformatics 3 (2002) 4
    • (2002) BMC Bioinformatics , vol.3 , pp. 4
    • Bakay, M.1    Chen, Y.W.2    Borup, R.3    Zhao, P.4    Nagaraju, K.5    Hoffman, E.P.6
  • 11
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber W., Heydebreck A., Sultmann H., Poustka A., and Vingron M. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18 (2002) 96-104
    • (2002) Bioinformatics , vol.18 , pp. 96-104
    • Huber, W.1    Heydebreck, A.2    Sultmann, H.3    Poustka, A.4    Vingron, M.5
  • 12
    • 0036900895 scopus 로고    scopus 로고
    • Fundamentals of experimental design for cDNA microarrays
    • Churchill G.A. Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32 suppl. (2002) 490-495
    • (2002) Nat. Genet. , vol.32 , Issue.SUPPL , pp. 490-495
    • Churchill, G.A.1
  • 13
    • 0036319960 scopus 로고    scopus 로고
    • Design issues for cDNA microarray experiments
    • Yang Y.H., and Speed T. Design issues for cDNA microarray experiments. Nat. Rev. Genet. 3 (2002) 579-588
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 579-588
    • Yang, Y.H.1    Speed, T.2
  • 14
    • 16244396432 scopus 로고    scopus 로고
    • Assessing statistical precision, power, and robustness of alternative experimental designs for two color microarray platforms based on mixed effects models
    • Tempelman R.J. Assessing statistical precision, power, and robustness of alternative experimental designs for two color microarray platforms based on mixed effects models. Vet. Immunol. Immunopathol. 105 (2005) 175-186
    • (2005) Vet. Immunol. Immunopathol. , vol.105 , pp. 175-186
    • Tempelman, R.J.1
  • 15
    • 0242317346 scopus 로고    scopus 로고
    • Fundamentals of cDNA microarray data analysis
    • Leung Y.F., and Cavalieri D. Fundamentals of cDNA microarray data analysis. Trends Genet. 19 (2003) 649-659
    • (2003) Trends Genet. , vol.19 , pp. 649-659
    • Leung, Y.F.1    Cavalieri, D.2
  • 16
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush J. Microarray data normalization and transformation. Nat. Genet. 32 suppl. (2002) 496-501
    • (2002) Nat. Genet. , vol.32 , Issue.SUPPL , pp. 496-501
    • Quackenbush, J.1
  • 17
    • 0000884487 scopus 로고    scopus 로고
    • Experimental design for gene expression microarrays
    • Kerr M.K., and Churchill G.A. Experimental design for gene expression microarrays. Biostatistics 2 (2001) 183-201
    • (2001) Biostatistics , vol.2 , pp. 183-201
    • Kerr, M.K.1    Churchill, G.A.2
  • 18
    • 30344454706 scopus 로고    scopus 로고
    • A genotype calling algorithm for Affymetrix SNP arrays
    • Rabbee N., and Speed T.P. A genotype calling algorithm for Affymetrix SNP arrays. Bioinformatics 22 (2006) 7-12
    • (2006) Bioinformatics , vol.22 , pp. 7-12
    • Rabbee, N.1    Speed, T.P.2
  • 22
    • 3342922372 scopus 로고    scopus 로고
    • Rapid detection of common Chinese glucose-6-phosphate dehydrogenase (G6PD) mutations by microarray-based assay
    • Ye B.C., Liu H., and Lei Z. Rapid detection of common Chinese glucose-6-phosphate dehydrogenase (G6PD) mutations by microarray-based assay. Am. J. Hematol. 76 (2004) 405-412
    • (2004) Am. J. Hematol. , vol.76 , pp. 405-412
    • Ye, B.C.1    Liu, H.2    Lei, Z.3
  • 23
    • 3943108794 scopus 로고    scopus 로고
    • Simultaneous detection of -thalassemia and -thalassemia by oligonucleotide microarray
    • Ye B.C., Liu H., Zhang Z., Lei Z., and Gao J. Simultaneous detection of -thalassemia and -thalassemia by oligonucleotide microarray. Haematologica 89 (2004) 1010-1012
    • (2004) Haematologica , vol.89 , pp. 1010-1012
    • Ye, B.C.1    Liu, H.2    Zhang, Z.3    Lei, Z.4    Gao, J.5
  • 24
    • 35848953824 scopus 로고    scopus 로고
    • Construction of microarrays for genotyping of DQA using unmodified 45-mer oligonucleotide
    • Yin B.C., Yue F., and Ye B.C. Construction of microarrays for genotyping of DQA using unmodified 45-mer oligonucleotide. Mol. Biotechnol. 36 (2007) 142-150
    • (2007) Mol. Biotechnol. , vol.36 , pp. 142-150
    • Yin, B.C.1    Yue, F.2    Ye, B.C.3
  • 25
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr M.K., Martin M., and Churchill G.A. Analysis of variance for gene expression microarray data. J. Comput. Biol. 7 (2000) 819-837
    • (2000) J. Comput. Biol. , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 26
    • 3943113640 scopus 로고    scopus 로고
    • Using ANOVA to analyze microarray data
    • Churchill G.A. Using ANOVA to analyze microarray data. BioTechniques 37 (2004) 173-177
    • (2004) BioTechniques , vol.37 , pp. 173-177
    • Churchill, G.A.1
  • 27
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad B.M., Irizarry R.A., Astrand M., and Speed T.P. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19 (2003) 185-193
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.