Characterization and identification of tunisian olive tree varieties by microsatellite markers

HortScience

Volumn 43, Issue 5, 2008, Pages 1371-1376

  Rekik, Imen ^a,b   Salimonti, Amelia ^c   Kamoun, Naziha Grati ^a   Muzzalupo, Innocenzo ^c   Lepais, Oliver ^d   Gerber, Sophie ^d   Perri, Enzo ^c   Rebai, Ahmed ^b  

^a INSTITUT DE L OLIVIER   (Tunisia)

^b CENTRE DE BIOTECHNOLOGIE DE SFAX   (Tunisia)

^c ISTITUTO NAZIONALE DELLA NUTRIZIONE   (Italy)

^d UMR 1202 BIOGECO   (France)

Author keywords

Cultivar genotyping; Genetic diversity; Olea europaea; SSR markers

Indexed keywords

OLEA EUROPAEA;

EID: 54249084509     PISSN: 00185345     EISSN: None     Source Type: Journal    
DOI: 10.21273/hortsci.43.5.1371     Document Type: Article

References (59)

1. Angiolillo, A., M. Mencuccini, and L. Baldoni. 1999. Olive genetic diversity assessed using amplified fragment length polymorphisms. Theor. Appl. Genet. 98:411-421.
2. Bandelj, D., i. Jakše, and B. Javornik. 2002. DNA fingerprinting of olive varieties by microsatellite markers. Food Technol. Biotechnol. 40:185-190.
3. Bandelj, D., J. Jakse, and B. Javornik. 2004. Assessment of genetic variability of olive varieties by microsatellite and AFLP markers. Euphytica 136:93-102.
4. Belaj, A., G. Cipriani, R. Testolin, L. Rallo, and I. Trujillo. 2004. Characterization and identification of the main Spanish and Italian olive cultivars by simple-sequence-repeat markers. Hort. Sci. 39:1557-1561.
5. Belaj, A., Z. Satovic, G. Cipriani, L. Baldoni, R. Testolin, L. Rallo, and I. Trujillo. 2003. Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and their effectiveness in establishing genetic relationships in olive. Theor. Appl. Genet. 107:736-744.
6. Belaj, A., Z. Satovic, L. Rallo, and I. Trujillo. 2002. Genetic diversity and relationships in olive (Olea europaea L.) germplasm collections as determined by randomly amplified polymorphic DNA. Theor. Appl. Genet. 105:638-644.
7. Besnard, G., P. Baradat, and A. Bervillé. 2001. Genetic relationships in the olive (Olea europaea L.) reflect multilocal selection of cultivars. Theor. Appl. Genet. 102:251-258.
8. Bogani, P., D. Cavalien, R. Petruccelli, L. Polsinelli, and G. Roselli. 1994. Identification of olive tree cultivars by using random amplified polymorphic DNA. Acta Hort. 356:98-101.
9. Brenner, C. and J. Morris. 1990. Paternity index calculations in single locus hypervariable DNA probes: Validation and other studies, p. 21-53. In: Proc. for the International Symposium on Human Identification. Promega Corporation, Madison, WI.
10. Breton, C., M. Tersac, and A. Bervillé. 2006. Genetic diversity and gene flow between the wild olive (oleaster, Olea europaea L.) and the olive: Several Plio-Pleistocene refuge zones in the Mediterranean basin suggested by simple sequence repeats analysis. J. Biogeogr. 33: 1916-1928.
11. Bronzini de Caraffa, V., J. Giannetti, C. Gambetti, and L. Maury. 2002. Genetic relationships between cultivated and wild olives of Corsica and Sardinia using RAPD markers. Euphytica 123:263-270.
12. Brookfield, J.F.Y. 1996. A simple new method for estimating null allele frequency from heterozygote deficiency. Mol. Ecol. 5:453-455.
13. Burns, M., D. Shanahan, H. Valdivia, and N. Harris. 2003. Quantitative event-specific multiplex PCR detection of round up ready Soya using LabChip technology. Eur. Food Res. Technol. 216:428-433.
14. Carriero, F., G. Fontanazza, F. Cellini, and G. Giorio. 2002. Identification of simple sequence repeats (SSRs) in olive (Olea europea L.). Theor. Appl. Genet. 104:301-307.
15. Cipriani, G., M.T. Marrazzo, R. Marconi, A. Cimato, and R. Testolin. 2002. Microsatellite markers isolated in olive (Olea europaea L.) are suitable for individual fingerprinting and reveal polymorphism within ancient cultivars. Theor. Appl. Genet. 104:223-228.
16. De La Rosa, R., C.M. James, and K.R. Tobutt. 2004. Using microsatellites for paternity testing in olive progenies. HortScience 39:351-354.
17. Di Vecchi Staraz, M., M. Boselli, S. Gerber, V. Laucou, T. Lacombe, P. This, and D. Varès. 2007. FaMoz: A software for large scale parentage analysis in Vitis vinifera L. Species. Acta Hort. 754:79-84.
18. Díaz, A., R. De la Rosa, A. Martín, and P. Rallo. 2006. Development, characterization and inheritance of new microsatellites in olive (Olea europaea L.) and evaluation of their usefulness in cultivar identification and genetic relationship studies. Tree Genetics and Genomes 2:165-175.
19. Fabbri, A., J.I. Hormaza, and V.S. Polito. 1995. Random amplified polymorphic DNA analysis of olive (Olea europaea L) cultivars. J. Amer. Soc. Hort. Sci. 120:538-542.
20. Gerber, S., P. Chabrier, and A. Kremer. 2003. FaMoz: A software for parentage analysis using dominant, codominant and uniparentally inherited markers. Mol. Ecol. Notes 3:479-481.
21. Grati Kamoun, N., M. Ayadi, M. Khlif, A. Tridui, B. Karray, H. Rekik, B. Rekik, T. Hamdi, and M.N. Arous. 2000. Pomological and chemical characterization of Tunisia olive tree (Olea europaea L.), p. 25-30. In: Proc. of the 4th International Olive Growing Symposium CIHEAM-IAM, Bari, Italy, September.
22. Grati Kamoun, N., F. Chibani, A. Chaari, and M. Khlif. 1992. Etude de la variabilité isoenzymatique chez l'olivier. In: Proc. of the 32nd Science week Symposium, Damas, Syria, 7-11 Nov. 1992, Book 3. 1:407-420.
23. Grati Kamoun, N. and M. Khlif. 2001. Caractérisation technologique des variétés d'olivier cultivées en Tunisie. Ezzaitouna, Special Number, p. 1-74.
24. Grati Kamoun, N., M. Khlif, and M.T. Hamdi. 1999. Evolution of oils characteristics with maturity of olives in Sfax: Chemleli variety. Acta Hort. 474:701-704.
25. Grati Kamoun, N., F. Lamy Mahmoud, A. Rebai, A. Gargouri, O. Panaud, and A. Saar. 2006. Genetic diversity of Tunisian olive tree (Olea europaea L.) cultivars assessed by AFLP markers. Genet. Resour. Crop Ev. 53:265-275.
26. Grati Kamoun, N., N. Ouazzani, and A. Trigui. 2002. Characterizing isozymes of some Tunisian olive (Olea europaea L.) cultivars. Acta Hort. 586:137-140.
27. Hess, J., J.W. Kadereit, and P. Vargas. 2000. The colonization history of Olea europaea L. in Macaronesia based on internal transcribed spacer 1 (ITS-1) sequences, randomly amplified polymorphic DNAs (RAPD), and intersimple sequence repeats (ISSR). Mol. Ecol. 9:857-868.
28. Jaccard, P. 1908. Nouvelles recherches sur la distribution florale. Bull. Soc. Vaud. Sci. Nat. 44:223-270.
29. Kalinowski, S.T., A.P. Wagner, and M.L. Taper. 2006. ML-Relate: A computer program for maximum likelihood estimation of relatedness and relationship. Mol. Ecol. Notes 6:576-579.
30. Khadari, B., C. Breton, N. Moutier, J.P. Roger, G. Besnard, A. Bervillé, and F. Dosba. 2003. The use of molecular markers for germplasm management in a French olive collection. Theor. Appl. Genet. 106:521-529.
31. Lombardo, N., G. Godino, M. Alessandrino, T. Belfiore, and I. Muzzalupo. 2004. Contribute alla caratterizzazione del germoplasma olivicolo pugliese. Ed. I.S.Ol., Rende, Cosenza, Italy.
32. Lombardo, N., E. Perri, I. Muzzalupo, A. Madeo, G. Godino, and M. Pellegrino. 2003. Il germoplasma olivicolo calabrese. Ed. Co.R.Ass.Ol., Regione Calabria, Lamezia Terme, CZ, Italy.
33. Lumaret, R., N. Ouazzani, H. Michaud, G. Vivier, M.F. Deguilloux, and F. Di Giusto. 2004. Allozyme variation of Oleaster populations (wild olive tree) (Olea europaea L.) in the Mediterranean Basin. Heredity 92:343-351.
34. Mehri, H., M. Msallem, and R. Kamoun Mehri. 1997. Identification des principaux cultivars d'oliviers cultives en Tunisie. Plant Genet. Resour. Newslett 112:68-72.
35. Montemurro, C., R. Simeone, A. Pasqualone, E. Ferrara, and A. Blanco. 2005. Genetic relationships and cultivar identification among 112 olive accessions using AFLP and SSR markers. J. Hort. Sci. Biotechnol. 80:105-110.
36. Muzzalupo, I., A. Fodale, N. Lombardo, R. Mulè, M.A. Caravita, A. Salimonti, M. Pellegrino, and E. Perri. 2007a. Genetic diversity and relationships in olive Sicilian germplasm collections as determined by RAPD markers. Ad. Hort. Sci. 21:35-40.
37. Muzzalupo, I., M. Pellegrino, and E. Perri. 2007b. Detection of DNA in virgin olive oils extracted from destoned fruits. Eur. Food Res. Technol. 224:469-475.
38. Muzzalupo, I., N. Lombardo, M. Pellegrino, and E. Perri. 2006a. Studio della variabilità genetica di ecotipi di olivo dell'Abruzzo e del Molise mediante l'uso di marcatori molecolari SSR, p. 31-35. In: Proc. of the Congress Maturazione e raccolta delle olive: strategia e tecnologie per aumentare la competitività in olivicoltura, Alanno (PE), Italy.
39. Muzzalupo, I., N. Lombardo, A. Musacchio, M.E. Noce, G. Pellegrino, E. Perri, and A. Sajjad. 2006b. DNA sequence analysis of microsatellite markers enhances their efficiency for germplasm management in an Italian olive collection. J. Amer. Soc. Hort. Sci. 131:352-359.
40. Muzzalupo, I., N. Lombardo, A. Salimonti, and E. Perri. 2008a. Molecular characterization of Italian olive cultivars by microsatellite markers. Ad. Hort. Sci. 22:144-150.
41. Muzzalupo, I., A. Salimonti, M.A. Caravita, M. Pellegrino, and E. Perri. 2008b. SSR markers for characterization and identification of cultivars of Olea europaea L. in the Abruzzo and Mouse regions, in south-central Italy. Ad. Hort. Sci. 22:131-137.
42. Perri, E., I. Muzzalupo, and R. Siriani. 2002. RAPD-PCR amplification of DNA from virgin olive oil. Acta Hort. 586:583-586.
43. Perri, E., M.V. Parlati, A. Palopoli, and B. Rizzuti. 1995. Polimorfismo isoenzimatico del polline dell'olivo (Olea europaea L.). Italus Hortus 2:31-36.
44. Rallo, P., G. Dorado, and A. Martin. 2000. Development of simple sequence repeats (SSRs) in olive tree (Olea europaea L.). Theor. Appl. Genet. 101:984-989.
45. Reale, S., S. Doveri, A. Díaz, A. Angiolillo, L. Lucentini, F. Pilla, A. Martín, P. Donini, and D. Lee. 2006. SNP-based markers for discriminating olive (Olea europaea L.) cultivars. Genome 49:1193-1205.
46. Rohlf, F.J. 1999. NTSYS-pc. Numerical taxonomy and multivariate analysis system. Version 2.1. Exeter Software, Setauket, NY.
47. Ruby, J. 1918. Recherches morphologiques et biologiques sur l'olivier et sur les variétés cultivées en France. Faculté des Sciences, Paris, France. Thesis.
48. Sajjad, A., I. Muzzalupo, E. Perri, and G. Sindona. 2006. Characterisation of olive germplasm from Abruzzo, Apulia, Molise, Tuscany and Sicily regions by microsatellite markers, p. 36-50. In: Sindona, G. and L. Maiuolo (eds.). The contribution of chemistry molecular biology and medicinal chemistry to life sciences. Aracne Editrice srl, Rome, Italy.
49. Sarri, V., L. Baldoni, A. Porceddu, N.G.M. Cultrera, A. Contento, M. Frediani, A. Belaj, I. Trujillo, and P.G. Cionini. 2006. Microsatellite markers are powerful tools for discriminating among olive cultivars and assigning them to geographically defined populations. Genome 49:1606-1615.
50. Sefc, K.M., M.S. Lopes, D. Mendonça, M. Rodrigues dos Santos, M. Laimer da Camara Machado, and A. Da Camara Machado. 2000. Identification of microsatellite loci in olive (Olea europea) and their characterization in Italian and Iberian olive trees. Mol. Ecol. 9:1171-1173.
51. Sensi, E., R. Vignani, M. Scali, E. Masi, and M. Cresti. 2003. DNA fingerprinting and genetic relatedness among cultivated varieties of Olea europaea L. estimated by AFLP analysis. Scientia Hort. 97:379-388.
52. Taamalli, W., F. Geuna, R. Banfi, D. Bassi, D. Daoud, and M. Zarrouk. 2006. Agronomic and molecular analyses for the characterisation of accessions in Tunisian olive germplasm collections. Electron J. Biotechn. 9:467-481.
53. Taamalli, W., F. Geuna, R. Banfi, D. Bassi, D. Daoud, and M. Zarrouk. 2007. Using microsatellite markers to characterise the main Tunisian olive cultivars Chemlali and Chetoui. J. Hort. Sci. Biotechnol. 82:25-28.
54. Trujillo, I. and L. Rallo. 1995. Identifying olive cultivars by isozyme analysis. J. Amer. Soc. Hort. Sci. 120:318-324.
55. Wagner, A.P., S. Creel, and S.T. Kalinowski. 2006. Estimating relatedness and relationship using microsatellite loci with null alleles. Heredity 97:336-345.
56. Weir, B.S. 1996. Genetic data analysis II. Sinauer, Sunderland, MA.
57. Wiesman, Z., N. Avidan, S. Lavee, and B. Quebedeaux. 1998. Molecular characterization of common olive varieties in Israel and the West bank using randomly amplified polymorphic DNA (RAPD) markers. J. Amer. Soc. Hort. Sci. 123:837-841.
58. Wu, S.B., G. Collins, and M. Sedgley. 2004. A molecular linkage map of olive (Olea europaea) based on RAPD, microsatellite, and SCARS markers. Genome 47:26-35.
59. Zhang, L., P.O. Hakins, G. Kochert, S. Kersovich, R. Dean, and W. Hanna. 1999. Differentiation of bermudagrass (Cynodon spp.) genotypes by AFLP analyses. Theor. Appl. Genet. 98:895-902.