-
1
-
-
20444391729
-
Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants
-
10.1146/annurev.arplant.55.031903.141717 15862102
-
Ma H Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants Annu Rev Plant Biol 2005, 56:393-434. 10.1146/annurev.arplant.55.031903.141717 15862102
-
(2005)
Annu Rev Plant Biol
, vol.56
, pp. 393-434
-
-
Ma, H.1
-
2
-
-
0001629044
-
The tapetum: Its form, function, and possible phylogeny in Embryophyta
-
10.1007/BF00983304
-
Pacini E Franchi GG Hesse M The tapetum: Its form, function, and possible phylogeny in Embryophyta Plant Syst Evol 1985, 149:155-185. 10.1007/BF00983304
-
(1985)
Plant Syst Evol
, vol.149
, pp. 155-185
-
-
Pacini, E.1
Franchi, G.G.2
Hesse, M.3
-
4
-
-
0032758311
-
MADS-box genes active in developing pollen cones of Norway spruce (Picea abies) are homologous to the B-class floral homeotic genes in angiosperms
-
10.1002/(SICI)1520-6408(1999)25:3<253::AID-DVG8>3.0.CO;2-P 10528266
-
Sundström J Carlsbecker A Svensson ME Svenson M Johanson U Theißen G Engström P MADS-box genes active in developing pollen cones of Norway spruce (Picea abies) are homologous to the B-class floral homeotic genes in angiosperms Dev Genet 1999, 25:253-266. 10.1002/(SICI)1520-6408(1999)25:3<253::AID-DVG8>3.0.CO;2-P 10528266
-
(1999)
Dev Genet
, vol.25
, pp. 253-266
-
-
Sundström, J.1
Carlsbecker, A.2
Svensson, M.E.3
Svenson, M.4
Johanson, U.5
Theißen, G.6
Engström, P.7
-
5
-
-
0036324269
-
Conifer reproductive development involves B-type MADS-box genes with distinct and different activities in male organ primordia
-
Sundström J Engström P Conifer reproductive development involves B-type MADS-box genes with distinct and different activities in male organ primordia Plant J 2002, 31:161-169. 10.1046/ j.1365-313X.2002.01343.x 12121446
-
(2002)
Plant J
, vol.31
, pp. 161-169
-
-
Sundström, J.1
Engström, P.2
-
6
-
-
0032170460
-
Characterization of an AGAMOUS homologue from the conifer black spruce (Picea mariana) that produces floral homeotic conversions when expressed in Arabidopsis
-
10.1046/j.1365-313x.1998.00250.x 9778845
-
Rutledge R Regan S Nicolas O Fobert P Côté C Bosnich W Kauffeldt C Sunohara G Séguin A Stewart D Characterization of an AGAMOUS homologue from the conifer black spruce (Picea mariana) that produces floral homeotic conversions when expressed in Arabidopsis Plant J 1998, 15:625-634. 10.1046/j.1365-313x.1998.00250.x 9778845
-
(1998)
Plant J
, vol.15
, pp. 625-634
-
-
Rutledge, R.1
Regan, S.2
Nicolas, O.3
Fobert, P.4
Côté, C.5
Bosnich, W.6
Kauffeldt, C.7
Sunohara, G.8
Séguin, A.9
Stewart, D.10
-
7
-
-
0032727298
-
A DEF/GLO-like MADS-box gene from a gymnosperm: Pinus radiata contains an ortholog of angiosperm B class floral homeotic genes
-
10.1002/(SICI)1520-6408(1999)25:3<245::AID-DVG7>3.0.CO;2-N 10528265
-
Mouradov A Hamdorf B Teasdale RD Kim JT Winter K-U Theißen G A DEF/GLO-like MADS-box gene from a gymnosperm: Pinus radiata contains an ortholog of angiosperm B class floral homeotic genes Dev Genet 1999, 25:245-252. 10.1002/(SICI)1520-6408(1999)25:3<245::AID- DVG7>3.0.CO;2-N 10528265
-
(1999)
Dev Genet
, vol.25
, pp. 245-252
-
-
Mouradov, A.1
Hamdorf, B.2
Teasdale, R.D.3
Kim, J.T.4
Winter, K.-U.5
Theißen, G.6
-
8
-
-
0345581063
-
The DAL10 gene from Norway spruce (Picea abies) belongs to a potentially gymnosperm-specific subclass of MADS-box genes and is specifically active in seed cones and pollen cones
-
10.1046/j.1525-142X.2003.03060.x 14984037
-
Carlsbecker A Sundström J Tandre K Englund M Kvarnheden A Johanson U Engström P The DAL10 gene from Norway spruce (Picea abies) belongs to a potentially gymnosperm-specific subclass of MADS-box genes and is specifically active in seed cones and pollen cones Evol Dev 2003, 5:551-561. 10.1046/j.1525-142X.2003.03060.x 14984037
-
(2003)
Evol Dev
, vol.5
, pp. 551-561
-
-
Carlsbecker, A.1
Sundström, J.2
Tandre, K.3
Englund, M.4
Kvarnheden, A.5
Johanson, U.6
Engström, P.7
-
9
-
-
8444227933
-
The MADS-box gene DAL1 is a potential mediator of the juvenile-to-adult transition in Norway spruce (Picea abies)
-
10.1111/j.1365-313X.2004.02226.x 15500470
-
Carlsbecker A Tandre K Johanson U Englund M Engström P The MADS-box gene DAL1 is a potential mediator of the juvenile-to-adult transition in Norway spruce (Picea abies) Plant J 2004, 40:546-557. 10.1111/ j.1365-313X.2004.02226.x 15500470
-
(2004)
Plant J
, vol.40
, pp. 546-557
-
-
Carlsbecker, A.1
Tandre, K.2
Johanson, U.3
Englund, M.4
Engström, P.5
-
10
-
-
0029109360
-
Conifer homologues to genes that control floral development in angiosperms
-
10.1007/BF00019179 7865797
-
Tandre K Albert VA Sundås A Engström P Conifer homologues to genes that control floral development in angiosperms Plant Mol Biol 1995, 27:69-78. 10.1007/BF00019179 7865797
-
(1995)
Plant Mol Biol
, vol.27
, pp. 69-78
-
-
Tandre, K.1
Albert, V.A.2
Sundås, A.3
Engström, P.4
-
11
-
-
33846818868
-
APETALA2 like genes from Picea abies show functional similarities to their Arabidopsis homologues
-
10.1007/s00425-006-0374-1 16953432
-
Nilsson L Carlsbecker A Sundås-Larsson A Vahala T APETALA2 like genes from Picea abies show functional similarities to their Arabidopsis homologues Planta 2007, 225:589-602. 10.1007/s00425-006-0374-1 16953432
-
(2007)
Planta
, vol.225
, pp. 589-602
-
-
Nilsson, L.1
Carlsbecker, A.2
Sundås-Larsson, A.3
Vahala, T.4
-
12
-
-
0032568593
-
NEEDLY, a Pinus radiata ortholog of FLORICAULA/LEAFY genes, expressed in both reproductive and vegetative meristems
-
27861 9601002 10.1073/pnas.95.11.6537
-
Mouradov A Glassick T Hamdorf B Murphy L Fowler B Marla S Teasdale RD NEEDLY, a Pinus radiata ortholog of FLORICAULA/LEAFY genes, expressed in both reproductive and vegetative meristems Proc Natl Acad Sci USA 1998, 95:6537-6542. 27861 9601002 10.1073/pnas.95.11.6537
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 6537-6542
-
-
Mouradov, A.1
Glassick, T.2
Hamdorf, B.3
Murphy, L.4
Fowler, B.5
Marla, S.6
Teasdale, R.D.7
-
13
-
-
0032212575
-
PRFLL - A Pinus radiata homologue of FLORICAULA and LEAFY is expressed in buds containing vegetative shoot and undifferentiated male cone primordia
-
10.1007/s004250050440 9821691
-
Mellerowicz EJ Horgan K Walden A Coker A Walter C PRFLL - a Pinus radiata homologue of FLORICAULA and LEAFY is expressed in buds containing vegetative shoot and undifferentiated male cone primordia Planta 1998, 206:619-629. 10.1007/s004250050440 9821691
-
(1998)
Planta
, vol.206
, pp. 619-629
-
-
Mellerowicz, E.J.1
Horgan, K.2
Walden, A.3
Coker, A.4
Walter, C.5
-
14
-
-
0033402319
-
Genes expressed in Pinus radiata male cones include homologs to anther-specific and pathogenesis response genes
-
59478 10594098 10.1104/pp.121.4.1103
-
Walden AR Walter C Gardner RC Genes expressed in Pinus radiata male cones include homologs to anther-specific and pathogenesis response genes Plant Physiol 1999, 121:1103-1116. 59478 10594098 10.1104/ pp.121.4.1103
-
(1999)
Plant Physiol
, vol.121
, pp. 1103-1116
-
-
Walden, A.R.1
Walter, C.2
Gardner, R.C.3
-
15
-
-
0141433318
-
Epidemiology of Japanese cedar pollinosis throughout Japan
-
14533662
-
Okuda M Epidemiology of Japanese cedar pollinosis throughout Japan Ann Allergy Asthma Immunol 2003, 91:288-296. 14533662
-
(2003)
Ann Allergy Asthma Immunol
, vol.91
, pp. 288-296
-
-
Okuda, M.1
-
17
-
-
54149102925
-
Detection of time and initiating factors on male flower differentiation of Japanese cedar (Cryptomeria japonica)
-
Jin C Nakanishi T Ogasawara H Detection of time and initiating factors on male flower differentiation of Japanese cedar (Cryptomeria japonica) Jpn J Palynol 2004, 50:23-29.
-
(2004)
Jpn J Palynol
, vol.50
, pp. 23-29
-
-
Jin, C.1
Nakanishi, T.2
Ogasawara, H.3
-
18
-
-
1042302450
-
Analysis of expressed sequence tags derived from developing seed and pollen cones of Cryptomeria japonica
-
10.1055/s-2003-44690
-
Ujino-Ihara T Taguchi Y Yoshimura K Tsumura Y Analysis of expressed sequence tags derived from developing seed and pollen cones of Cryptomeria japonica Plant Biol 2003, 5:600-607. 10.1055/s-2003-44690
-
(2003)
Plant Biol
, vol.5
, pp. 600-607
-
-
Ujino-Ihara, T.1
Taguchi, Y.2
Yoshimura, K.3
Tsumura, Y.4
-
19
-
-
33845870151
-
Analysis of expressed sequence tags from Cryptomeria japonica pollen reveals novel pollen-specific transcripts
-
17169891
-
Futamura N Ujino-Ihara T Nishiguchi M Kanamori H Yoshimura K Sakaguchi M Shinohara K Analysis of expressed sequence tags from Cryptomeria japonica pollen reveals novel pollen-specific transcripts Tree Physiol 2006, 26:1517-1528. 17169891
-
(2006)
Tree Physiol
, vol.26
, pp. 1517-1528
-
-
Futamura, N.1
Ujino-Ihara, T.2
Nishiguchi, M.3
Kanamori, H.4
Yoshimura, K.5
Sakaguchi, M.6
Shinohara, K.7
-
20
-
-
0032170495
-
High-efficiency cloning of Arabidopsis full-length cDNA by biotinylated CAP trapper
-
10.1046/j.1365-313x.1998.00237.x 9778851
-
Seki M Carninci P Nishiyama Y Hayashizaki Y Shinozaki K High-efficiency cloning of Arabidopsis full-length cDNA by biotinylated CAP trapper Plant J 1998, 15:707-720. 10.1046/j.1365-313x.1998.00237.x 9778851
-
(1998)
Plant J
, vol.15
, pp. 707-720
-
-
Seki, M.1
Carninci, P.2
Nishiyama, Y.3
Hayashizaki, Y.4
Shinozaki, K.5
-
21
-
-
33947667480
-
Identification of plant promoter constituents by analysis of local distribution of short sequences
-
1832190 17346352 10.1186/1471-2164-8-67
-
Yamamoto Y Ichida H Matsui M Obokata J Sakurai T Satou M Seki M Shinozaki K Abe T Identification of plant promoter constituents by analysis of local distribution of short sequences BMC Genomics 2007, 8:67. 1832190 17346352 10.1186/1471-2164-8-67
-
(2007)
BMC Genomics
, vol.8
, pp. 67
-
-
Yamamoto, Y.1
Ichida, H.2
Matsui, M.3
Obokata, J.4
Sakurai, T.5
Satou, M.6
Seki, M.7
Shinozaki, K.8
Abe, T.9
-
22
-
-
34247269658
-
Characterization of genes for a pollen allergen, Cry j 2, of Cryptomeria japonica
-
10.1159/000098225 17192717
-
Futamura N Kusunoki Y Mukai Y Shinohara K Characterization of genes for a pollen allergen, Cry j 2, of Cryptomeria japonica Int Arch Allergy Immunol 2007, 143:59-68. 10.1159/000098225 17192717
-
(2007)
Int Arch Allergy Immunol
, vol.143
, pp. 59-68
-
-
Futamura, N.1
Kusunoki, Y.2
Mukai, Y.3
Shinohara, K.4
-
23
-
-
10744219560
-
Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane
-
403815 14613979 10.1101/gr.1532103
-
Vettore AL da Silva FR Kemper EL Souza GM da Silva AM Ferro MIT Henrique-Silva F Giglioti ÉA Lemos MVF Coutinho LL Nobrega MP Carrer H França SC Bacci M Jr Goldman MHS Gomes SL Nunes LR Camargo LEA Siqueira WJ Van Sluys M-A Thiemann OH Kuramae EE Santelli RV Marino CL Targon MLPN Ferro JA Silveira HCS Marini DC Lemos EGM Monteiro-Vitorello CB Tambor JHM Carraro DM Roberto PG Martins VG Goldman GH de Oliveira RC Truffi D Colombo CA Rossi M de Araujo PG Sculaccio SA Angella A Lima MMA de Rosa VE Jr Siviero F Coscrato VE Machado MA Grivet L Di Mauro SMZ Nobrega FG Menck CFM Braga MDV Telles GP Cara FAA Pedrosa G Meidanis J Arruda P Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane Genome Res 2003, 13:2725-2735. 403815 14613979 10.1101/ gr.1532103
-
(2003)
Genome Res
, vol.13
, pp. 2725-2735
-
-
Vettore, A.L.1
da Silva, F.R.2
Kemper, E.L.3
Souza, G.M.4
da Silva, A.M.5
Ferro, M.I.T.6
Henrique-Silva, F.7
Giglioti, É.A.8
Lemos, M.V.F.9
Coutinho, L.L.10
Nobrega, M.P.11
Carrer, H.12
França, S.C.13
Bacci Jr., M.14
Goldman, M.H.S.15
Gomes, S.L.16
Nunes, L.R.17
Camargo, L.E.A.18
Siqueira, W.J.19
Van Sluys, M.-A.20
Thiemann, O.H.21
Kuramae, E.E.22
Santelli, R.V.23
Marino, C.L.24
Targon, M.L.P.N.25
Ferro, J.A.26
Silveira, H.C.S.27
Marini, D.C.28
Lemos, E.G.M.29
Monteiro-Vitorello, C.B.30
Tambor, J.H.M.31
Carraro, D.M.32
Roberto, P.G.33
Martins, V.G.34
Goldman, G.H.35
de Oliveira, R.C.36
Truffi, D.37
Colombo, C.A.38
Rossi, M.39
de Araujo, P.G.40
Sculaccio, S.A.41
Angella, A.42
Lima, M.M.A.43
de Rosa Jr., V.E.44
Siviero, F.45
Coscrato, V.E.46
Machado, M.A.47
Grivet, L.48
Di Mauro, S.M.Z.49
Nobrega, F.G.50
Menck, C.F.M.51
Braga, M.D.V.52
Telles, G.P.53
Cara, F.A.A.54
Pedrosa, G.55
Meidanis, J.56
Arruda, P.57
more..
-
24
-
-
0035825662
-
Functional annotation of a full-length mouse cDNA collection
-
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium 10.1038/35055500 11217851
-
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium Functional annotation of a full-length mouse cDNA collection Nature 2001, 409:685-690. 10.1038/35055500 11217851
-
(2001)
Nature
, vol.409
, pp. 685-690
-
-
-
25
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
222959 12969510 10.1186/1471-2105-4-41
-
Tatusov RL Fedorova ND Jackson JD Jacobs AR Kiryutin B Koonin EV Krylov DM Mazumder R Mekhedov SL Nikolskaya AN Rao BS Smirnov S Sverdlov AV Vasudevan S Wolf YI Yin JJ Natale DA The COG database: An updated version includes eukaryotes BMC Bioinformatics 2003, 4:41. 222959 12969510 10.1186/1471-2105-4-41
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
26
-
-
27944459324
-
Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in conifers
-
10.1007/s11103-005-2080-y 16307365
-
Ujino-Ihara T Kanamori H Yamane H Taguchi Y Namiki N Mukai Y Yoshimura K Tsumura Y Comparative analysis of expressed sequence tags of conifers and angiosperms reveals sequences specifically conserved in conifers Plant Mol Biol 2005, 59:895-907. 10.1007/s11103-005-2080-y 16307365
-
(2005)
Plant Mol Biol
, vol.59
, pp. 895-907
-
-
Ujino-Ihara, T.1
Kanamori, H.2
Yamane, H.3
Taguchi, Y.4
Namiki, N.5
Mukai, Y.6
Yoshimura, K.7
Tsumura, Y.8
-
27
-
-
9144257886
-
The Pfam protein families database
-
308855 14681378 10.1093/nar/gkh121
-
Bateman A Coin L Durbin R Finn RD Hollich V Griffiths-Jones S Khanna A Marshall M Moxon S Sonnhammer ELL Studholme DJ Yeats C Eddy SR The Pfam protein families database Nucl Acids Res 2004, 32:D138-D141. 308855 14681378 10.1093/nar/gkh121
-
(2004)
Nucl Acids Res
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.L.10
Studholme, D.J.11
Yeats, C.12
Eddy, S.R.13
-
28
-
-
27744527781
-
Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters
-
1277824 16236172 10.1186/1471-2164-6-144
-
Pavy N Paule C Parsons L Crow JA Morency M-J Cooke J Johnson JE Noumen E Guillet-Claude C Butterfield Y Barber S Yang G Liu J Stott J Kirkpatrick R Siddiqui A Holt R Marra M Seguin A Retzel E Bousquet J MacKay J Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters BMC Genomics 2005, 6:144. 1277824 16236172 10.1186/1471-2164-6-144
-
(2005)
BMC Genomics
, vol.6
, pp. 144
-
-
Pavy, N.1
Paule, C.2
Parsons, L.3
Crow, J.A.4
Morency, M.-J.5
Cooke, J.6
Johnson, J.E.7
Noumen, E.8
Guillet-Claude, C.9
Butterfield, Y.10
Barber, S.11
Yang, G.12
Liu, J.13
Stott, J.14
Kirkpatrick, R.15
Siddiqui, A.16
Holt, R.17
Marra, M.18
Seguin, A.19
Retzel, E.20
Bousquet, J.21
MacKay, J.22
more..
-
29
-
-
2442497313
-
Genome-wide analysis of spatial gene expression in Arabidopsis flowers
-
423218 15100403 10.1105/tpc.021741
-
Wellmer F Riechmann JL Alves-Ferreira M Meyerowitz EM Genome-wide analysis of spatial gene expression in Arabidopsis flowers Plant Cell 2004, 16:1314-1326. 423218 15100403 10.1105/tpc.021741
-
(2004)
Plant Cell
, vol.16
, pp. 1314-1326
-
-
Wellmer, F.1
Riechmann, J.L.2
Alves-Ferreira, M.3
Meyerowitz, E.M.4
-
30
-
-
17844410215
-
Transcriptome analysis of haploid male gametophyte development in Arabidopsis
-
545776 15535861 10.1186/gb-2004-5-11-r85
-
Honys D Twell D Transcriptome analysis of haploid male gametophyte development in Arabidopsis Genome Biol 2004, 5:R85. 545776 15535861 10.1186/gb-2004-5-11-r85
-
(2004)
Genome Biol
, vol.5
-
-
Honys, D.1
Twell, D.2
-
31
-
-
34248380799
-
Bioinformatics applied to allergy: Allergen databases, from collecting sequence information to data integration. The Allergome platform as a model
-
10.1016/j.cellimm.2007.02.012 17434469
-
Mari A Scala E Palazzo P Ridolfi S Zennaro D Carabella G Bioinformatics applied to allergy: Allergen databases, from collecting sequence information to data integration. The Allergome platform as a model Cell Immunol 2006, 244:97-100. 10.1016/j.cellimm.2007.02.012 17434469
-
(2006)
Cell Immunol
, vol.244
, pp. 97-100
-
-
Mari, A.1
Scala, E.2
Palazzo, P.3
Ridolfi, S.4
Zennaro, D.5
Carabella, G.6
-
32
-
-
33646907417
-
AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks
-
1400579 16524982 10.1104/pp.105.072280
-
Palaniswamy SK James S Sun H Lamb RS Davuluri RV Grotewold E AGRIS and AtRegNet. A platform to link cis-regulatory elements and transcription factors into regulatory networks Plant Physiol 2006, 140:818-829. 1400579 16524982 10.1104/pp.105.072280
-
(2006)
Plant Physiol
, vol.140
, pp. 818-829
-
-
Palaniswamy, S.K.1
James, S.2
Sun, H.3
Lamb, R.S.4
Davuluri, R.V.5
Grotewold, E.6
-
33
-
-
0034760250
-
Flow cytometric determination of genome size in the Taxodiaceae, Cupressaceae sensu stricto and Sciadopityaceae
-
Hizume M Kondo T Shibata F Ishizuka R Flow cytometric determination of genome size in the Taxodiaceae, Cupressaceae sensu stricto and Sciadopityaceae Cytologia 2001, 66:307-311.
-
(2001)
Cytologia
, vol.66
, pp. 307-311
-
-
Hizume, M.1
Kondo, T.2
Shibata, F.3
Ishizuka, R.4
-
34
-
-
0032412237
-
Nuclear DNA amounts in gymnosperms
-
10.1006/anbo.1998.0764
-
Murray BG Nuclear DNA amounts in gymnosperms Ann Bot 1998, 82:3-15. 10.1006/anbo.1998.0764
-
(1998)
Ann Bot
, vol.82
, pp. 3-15
-
-
Murray, B.G.1
-
35
-
-
0033815222
-
Expression analysis of ESTs derived from the inner bark of Cryptomeria japonica
-
10.1023/A:1006492103063 11052197
-
Ujino-Ihara T Yoshimura K Ugawa Y Yoshimaru H Nagasaka K Tsumura Y Expression analysis of ESTs derived from the inner bark of Cryptomeria japonica Plant Mol Biol 2000, 43:451-457. 10.1023/A:1006492103063 11052197
-
(2000)
Plant Mol Biol
, vol.43
, pp. 451-457
-
-
Ujino-Ihara, T.1
Yoshimura, K.2
Ugawa, Y.3
Yoshimaru, H.4
Nagasaka, K.5
Tsumura, Y.6
-
36
-
-
20244377471
-
Functional annotation of a full-length Arabidopsis cDNA collection
-
10.1126/science.1071006 11910074
-
Seki M Narusaka M Kamiya A Ishida J Satou M Sakurai T Nakajima M Enju A Akiyama K Oono Y Muramatsu M Hayashizaki Y Kawai J Carninci P Itoh M Ishii Y Arakawa T Shibata K Shinagawa A Shinozaki K Functional annotation of a full-length Arabidopsis cDNA collection Science 2002, 296:141-145. 10.1126/science.1071006 11910074
-
(2002)
Science
, vol.296
, pp. 141-145
-
-
Seki, M.1
Narusaka, M.2
Kamiya, A.3
Ishida, J.4
Satou, M.5
Sakurai, T.6
Nakajima, M.7
Enju, A.8
Akiyama, K.9
Oono, Y.10
Muramatsu, M.11
Hayashizaki, Y.12
Kawai, J.13
Carninci, P.14
Itoh, M.15
Ishii, Y.16
Arakawa, T.17
Shibata, K.18
Shinagawa, A.19
Shinozaki, K.20
more..
-
37
-
-
0033228157
-
CapSelect: A highly sensitive method for 5′ CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs
-
148683 10518626 10.1093/nar/27.21.e31
-
Schmidt WM Mueller MW CapSelect: A highly sensitive method for 5′ CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs Nucl Acids Res 1999, 27:e31. 148683 10518626 10.1093/nar/27.21.e31
-
(1999)
Nucl Acids Res
, vol.27
-
-
Schmidt, W.M.1
Mueller, M.W.2
-
38
-
-
0038471197
-
Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana
-
165884 12771380 10.1073/pnas.1132171100
-
Kirst M Johnson AF Baucom C Ulrich E Hubbard K Staggs R Paule C Retzel E Whetten R Sederoff R Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana Proc Natl Acad Sci USA 2003, 100:7383-7388. 165884 12771380 10.1073/pnas.1132171100
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7383-7388
-
-
Kirst, M.1
Johnson, A.F.2
Baucom, C.3
Ulrich, E.4
Hubbard, K.5
Staggs, R.6
Paule, C.7
Retzel, E.8
Whetten, R.9
Sederoff, R.10
-
39
-
-
0030773907
-
Complex gene families in pine genomes
-
10.1016/S1360-1385(97)84624-9
-
Kinlaw CS Neale DB Complex gene families in pine genomes Trends Plant Sci 1996, 2:356-359. 10.1016/S1360-1385(97)84624-9
-
(1996)
Trends Plant Sci
, vol.2
, pp. 356-359
-
-
Kinlaw, C.S.1
Neale, D.B.2
-
41
-
-
1242319335
-
Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms
-
357026 14764899 10.1073/pnas.0308430100
-
Nam J Kim J Lee S An G Ma H Nei M Type I MADS-box genes have experienced faster birth-and-death evolution than type II MADS-box genes in angiosperms Proc Natl Acad Sci USA 2004, 101:1910-1915. 357026 14764899 10.1073/pnas.0308430100
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1910-1915
-
-
Nam, J.1
Kim, J.2
Lee, S.3
An, G.4
Ma, H.5
Nei, M.6
-
42
-
-
0036276554
-
Two ancient classes of MIKC-type MADS-box genes are present in the moss Physcomitrella patens
-
12032236
-
Henschel K Kofuji R Hasebe M Saedler H Münster T Theißen G Two ancient classes of MIKC-type MADS-box genes are present in the moss Physcomitrella patens Mol Biol Evol 2002, 19:801-814. 12032236
-
(2002)
Mol Biol Evol
, vol.19
, pp. 801-814
-
-
Henschel, K.1
Kofuji, R.2
Hasebe, M.3
Saedler, H.4
Münster, T.5
Theißen, G.6
-
43
-
-
0345581665
-
The major clades of MADS-box genes and their role in the development and evolution of flowering plants
-
10.1016/S1055-7903(03)00207-0 14615187
-
Becker A Theißen G The major clades of MADS-box genes and their role in the development and evolution of flowering plants Mol Phylogenet Evol 2003, 29:464-489. 10.1016/S1055-7903(03)00207-0 14615187
-
(2003)
Mol Phylogenet Evol
, vol.29
, pp. 464-489
-
-
Becker, A.1
Theißen, G.2
-
44
-
-
33747488490
-
AGL80 is required for central cell and endosperm development in Arabidopsis
-
1533969 16798889 10.1105/tpc.106.040824
-
Portereiko MF Lloyd A Steffen JG Punwani JA Otsuga D Drews GN AGL80 is required for central cell and endosperm development in Arabidopsis Plant Cell 2006, 18:1862-1872. 1533969 16798889 10.1105/tpc.106.040824
-
(2006)
Plant Cell
, vol.18
, pp. 1862-1872
-
-
Portereiko, M.F.1
Lloyd, A.2
Steffen, J.G.3
Punwani, J.A.4
Otsuga, D.5
Drews, G.N.6
-
45
-
-
34547505064
-
The floral genome: An evolutionary history of gene duplication and shifting patterns of gene expression
-
10.1016/j.tplants.2007.06.012 17658290
-
Soltis DE Ma H Frohlich MW Soltis PS Albert VA Oppenheimer DG Altman NS dePamphilis C Leebens-Mack J The floral genome: An evolutionary history of gene duplication and shifting patterns of gene expression Trends Plant Sci 2007, 12:358-367. 10.1016/j.tplants.2007.06.012 17658290
-
(2007)
Trends Plant Sci
, vol.12
, pp. 358-367
-
-
Soltis, D.E.1
Ma, H.2
Frohlich, M.W.3
Soltis, P.S.4
Albert, V.A.5
Oppenheimer, D.G.6
Altman, N.S.7
dePamphilis, C.8
Leebens-Mack, J.9
-
46
-
-
0035715919
-
A novel MADS-box gene subfamily with a sister-group relationship to class B floral homeotic genes
-
10.1007/s00438-001-0615-8 11862488
-
Becker A Kaufmann K Freialdenhoven A Vincent C Li M-A Saedler H Theissen G A novel MADS-box gene subfamily with a sister-group relationship to class B floral homeotic genes Mol Genet Genomics 2002, 266:942-950. 10.1007/s00438-001-0615-8 11862488
-
(2002)
Mol Genet Genomics
, vol.266
, pp. 942-950
-
-
Becker, A.1
Kaufmann, K.2
Freialdenhoven, A.3
Vincent, C.4
Li, M.-A.5
Saedler, H.6
Theissen, G.7
-
47
-
-
0036771661
-
The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat
-
151229 12368498 10.1105/tpc.004127
-
Nesi N Debeaujon I Jond C Stewart AJ Jenkins GI Caboche M Lepiniec L The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat Plant Cell 2002, 14:2463-2479. 151229 12368498 10.1105/ tpc.004127
-
(2002)
Plant Cell
, vol.14
, pp. 2463-2479
-
-
Nesi, N.1
Debeaujon, I.2
Jond, C.3
Stewart, A.J.4
Jenkins, G.I.5
Caboche, M.6
Lepiniec, L.7
-
48
-
-
10644238478
-
Phylogenetic signal in nucleotide data from seed plants: Implications for resolving the seed plant tree of life
-
10.3732/ajb.91.10.1599
-
Burleigh JG Mathews S Phylogenetic signal in nucleotide data from seed plants: Implications for resolving the seed plant tree of life Am J Bot 2004, 91:1599-1613. 10.3732/ajb.91.10.1599
-
(2004)
Am J Bot
, vol.91
, pp. 1599-1613
-
-
Burleigh, J.G.1
Mathews, S.2
-
49
-
-
0034636037
-
Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers
-
10760277 10.1073/pnas.97.8.4086
-
Chaw S-M Parkinson CL Cheng Y Vincent TM Palmer JD Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers PNAS 2000, 97:4086-4091. 18157 10760277 10.1073/pnas.97.8.4086
-
(2000)
PNAS
, vol.97
, pp. 4086-4091
-
-
Chaw, S.-M.1
Parkinson, C.L.2
Cheng, Y.3
Vincent, T.M.4
Palmer, J.D.5
-
50
-
-
0142183847
-
Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses
-
10.1093/molbev/msg216 12949148
-
Kofuji R Sumikawa N Yamasaki M Kondo K Ueda K Ito M Hasebe M Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses Mol Biol Evol 2003, 20:1963-1977. 10.1093/molbev/ msg216 12949148
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1963-1977
-
-
Kofuji, R.1
Sumikawa, N.2
Yamasaki, M.3
Kondo, K.4
Ueda, K.5
Ito, M.6
Hasebe, M.7
-
51
-
-
0033955275
-
A short history of MADS-box genes in plants
-
10.1023/A:1006332105728 10688133
-
Theissen G Becker A Rosa AD Kanno A Kim JT Münster T Winter K-U Saedler H A short history of MADS-box genes in plants Plant Mol Biol 2000, 42:115-149. 10.1023/A:1006332105728 10688133
-
(2000)
Plant Mol Biol
, vol.42
, pp. 115-149
-
-
Theissen, G.1
Becker, A.2
Rosa, A.D.3
Kanno, A.4
Kim, J.T.5
Münster, T.6
Winter, K.-U.7
Saedler, H.8
-
52
-
-
51249169259
-
A simple and efficient method for isolating RNA from pine trees
-
10.1007/BF02670468
-
Chang S Puryear J Cairney J A simple and efficient method for isolating RNA from pine trees Plant Mol Biol Rep 1993, 11:113-116. 10.1007/ BF02670468
-
(1993)
Plant Mol Biol Rep
, vol.11
, pp. 113-116
-
-
Chang, S.1
Puryear, J.2
Cairney, J.3
-
53
-
-
0031905770
-
Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA
-
18452 9435224 10.1073/pnas.95.2.520
-
Carninci P Nishiyama Y Westover A Itoh M Nagaoka S Sasaki N Okazaki Y Muramatsu M Hayashizaki Y Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA Proc Natl Acad Sci USA 1998, 95:520-524. 18452 9435224 10.1073/pnas.95.2.520
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 520-524
-
-
Carninci, P.1
Nishiyama, Y.2
Westover, A.3
Itoh, M.4
Nagaoka, S.5
Sasaki, N.6
Okazaki, Y.7
Muramatsu, M.8
Hayashizaki, Y.9
-
54
-
-
0033791308
-
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes
-
310980 11042159 10.1101/gr.145100
-
Carninci P Shibata Y Hayatsu N Sugahara Y Shibata K Itoh M Konno H Okazaki Y Muramatsu M Hayashizaki Y Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes Genome Res 2000, 10:1617-1630. 310980 11042159 10.1101/gr.145100
-
(2000)
Genome Res
, vol.10
, pp. 1617-1630
-
-
Carninci, P.1
Shibata, Y.2
Hayatsu, N.3
Sugahara, Y.4
Shibata, K.5
Itoh, M.6
Konno, H.7
Okazaki, Y.8
Muramatsu, M.9
Hayashizaki, Y.10
-
55
-
-
0035417016
-
Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel λ-FLC family allows enhanced gene discovery rate and functional analysis
-
10.1006/geno.2001.6601 11543636
-
Carninci P Shibata Y Hayatsu N Itoh M Shiraki T Hirozane T Watahiki A Shibata K Konno H Muramatsu M Hayashizaki Y Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel λ-FLC family allows enhanced gene discovery rate and functional analysis Genomics 2001, 77:79-90. 10.1006/geno.2001.6601 11543636
-
(2001)
Genomics
, vol.77
, pp. 79-90
-
-
Carninci, P.1
Shibata, Y.2
Hayatsu, N.3
Itoh, M.4
Shiraki, T.5
Hirozane, T.6
Watahiki, A.7
Shibata, K.8
Konno, H.9
Muramatsu, M.10
Hayashizaki, Y.11
-
56
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
9521921
-
Ewing B Hillier L Wendl MC Green P Base-calling of automated sequencer traces using phred. I. Accuracy assessment Genome Res 1998, 8:175-185. 9521921
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
58
-
-
19044393068
-
TAIR: A resource for integrated Arabidopsis data
-
10.1007/s10142-002-0077-z 12444417
-
Garcia-Hernandez M Berardini TZ Chen G Crist D Doyle A Huala E Knee E Lambrecht M Miller N Mueller LA Mundodi S Reiser L Rhee SY Scholl R Tacklind J Weems D Wu Y Xu I Yoo D Yoon J Zhang P TAIR: A resource for integrated Arabidopsis data Funct Integr Genomics 2002, 2:239-253. 10.1007/s10142-002-0077-z 12444417
-
(2002)
Funct Integr Genomics
, vol.2
, pp. 239-253
-
-
Garcia-Hernandez, M.1
Berardini, T.Z.2
Chen, G.3
Crist, D.4
Doyle, A.5
Huala, E.6
Knee, E.7
Lambrecht, M.8
Miller, N.9
Mueller, L.A.10
Mundodi, S.11
Reiser, L.12
Rhee, S.Y.13
Scholl, R.14
Tacklind, J.15
Weems, D.16
Wu, Y.17
Xu, I.18
Yoo, D.19
Yoon, J.20
Zhang, P.21
more..
-
59
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
9521923
-
Gordon D Abajian C Green P Consed: A graphical tool for sequence finishing Genome Res 1998, 8:195-202. 9521923
-
(1998)
Genome Res
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
60
-
-
13444306641
-
NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
539979 15608248 10.1093/nar/gki025
-
Pruitt KD Tatusova T Maglott DR NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins Nucl Acids Res 2005, 33:D501-504. 539979 15608248 10.1093/nar/ gki025
-
(2005)
Nucl Acids Res
, vol.33
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
61
-
-
0037624063
-
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
-
The Rice Full-Length cDNA Consortium 10.1126/science.1081288 12869764
-
The Rice Full-Length cDNA Consortium Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice Science 2003, 301:376-379. 10.1126/science.1081288 12869764
-
(2003)
Science
, vol.301
, pp. 376-379
-
-
-
62
-
-
13444273448
-
The Universal Protein Resource (UniProt)
-
540024 15608167 10.1093/nar/gki070
-
Bairoch A Apweiler R Wu CH Barker WC Boeckmann B Ferro S Gasteiger E Huang H Lopez R Magrane M Martin MJ Natale DA O'Donovan C Redaschi N Yeh L-SL The Universal Protein Resource (UniProt) Nucl Acids Res 2005, 33:D154-D159. 540024 15608167 10.1093/nar/gki070
-
(2005)
Nucl Acids Res
, vol.33
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.-S.L.15
-
63
-
-
13444273452
-
The TIGR Gene Indices: Clustering and assembling EST and known genes and integration with eukaryotic genomes
-
540018 15608288 10.1093/nar/gki064
-
Lee Y Tsai J Sunkara S Karamycheva S Pertea G Sultana R Antonescu V Chan A Cheung F Quackenbush J The TIGR Gene Indices: Clustering and assembling EST and known genes and integration with eukaryotic genomes Nucl Acids Res 2005, 33:D71-D74. 540018 15608288 10.1093/nar/gki064
-
(2005)
Nucl Acids Res
, vol.33
-
-
Lee, Y.1
Tsai, J.2
Sunkara, S.3
Karamycheva, S.4
Pertea, G.5
Sultana, R.6
Antonescu, V.7
Chan, A.8
Cheung, F.9
Quackenbush, J.10
-
64
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
308517 7984417 10.1093/nar/22.22.4673
-
Thompson JD Higgins DG Gibson TJ CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22:4673-4680. 308517 7984417 10.1093/nar/22.22.4673
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
66
-
-
0002367729
-
MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
-
Adachi J Hasegawa M MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood Comput Sci Monogr 1996, 28:1-150.
-
(1996)
Comput Sci Monogr
, vol.28
, pp. 1-150
-
-
Adachi, J.1
Hasegawa, M.2
-
67
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
1633570
-
Jones DT Taylor WR Thornton JM The rapid generation of mutation data matrices from protein sequences Comput Appl Biosci 1992, 8:275-282. 1633570
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
68
-
-
0028069573
-
Accuracies of the simple methods for estimating the bootstrap probability of a maximum-likelihood tree
-
Hasegawa M Kishino H Accuracies of the simple methods for estimating the bootstrap probability of a maximum-likelihood tree Mol Biol Evol 1994, 11:142-145.
-
(1994)
Mol Biol Evol
, vol.11
, pp. 142-145
-
-
Hasegawa, M.1
Kishino, H.2
|